mRNA_Ecto-sp13_S_contig1913.6100.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1913.6100.1
Unique NamemRNA_Ecto-sp13_S_contig1913.6100.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1913.6100.1 vs. uniprot
Match: D8LJY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJY9_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 1.940e-76
Identity = 116/128 (90.62%), Postives = 119/128 (92.97%), Query Frame = 1 
Query:    1 RLCSAVGRSTPVYVSYLSSRAGQDGRGKHLRRDHSSPSGDCVGKCKLAAAHYRS*AAWKIRVALQQQEPALSFHQEGALHPQHTMLRRHGNRREELLERSDGGADHGAGRSGAVVGQRRGRHISGQGC 384
            RLCSA  R+TPVYVSYLS RAGQDGR KHLRRDHS PSGDCVGKCKLAAAHYRS AAW+IR+ALQQQEPALSFHQEGALHPQHTMLRRHGNRREE LERSDGG DHGAGRSGAVVGQ RGRHISGQGC
Sbjct:    6 RLCSAAVRNTPVYVSYLS-RAGQDGRRKHLRRDHSGPSGDCVGKCKLAAAHYRSGAAWEIRLALQQQEPALSFHQEGALHPQHTMLRRHGNRREEFLERSDGGGDHGAGRSGAVVGQHRGRHISGQGC 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1913.6100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJY9_ECTSI1.940e-7690.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1913contigEcto-sp13_S_contig1913:3737..5740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size387
Hectar predicted targeting categorysignal peptide
Exons4
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462974.807152-UTR-Ecto-sp13_S_contig1913:3736..37921681462974.807152-UTR-Ecto-sp13_S_contig1913:3736..3792Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1913 3737..3792 +
1681462974.8182428-UTR-Ecto-sp13_S_contig1913:4008..40221681462974.8182428-UTR-Ecto-sp13_S_contig1913:4008..4022Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1913 4009..4022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462974.828736-CDS-Ecto-sp13_S_contig1913:4022..41311681462974.828736-CDS-Ecto-sp13_S_contig1913:4022..4131Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1913 4023..4131 +
1681462974.8463035-CDS-Ecto-sp13_S_contig1913:5224..53051681462974.8463035-CDS-Ecto-sp13_S_contig1913:5224..5305Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1913 5225..5305 +
1681462974.858635-CDS-Ecto-sp13_S_contig1913:5615..57401681462974.858635-CDS-Ecto-sp13_S_contig1913:5615..5740Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1913 5616..5740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1913.6100.1prot_Ecto-sp13_S_contig1913.6100.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1913 4023..5740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1913.6100.1

>prot_Ecto-sp13_S_contig1913.6100.1 ID=prot_Ecto-sp13_S_contig1913.6100.1|Name=mRNA_Ecto-sp13_S_contig1913.6100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MGVGNIFVATTLAPLVIVLASVSLQLLTIGLEQLGKYASHSNSKSPLYPF
IRKAHFILNTQCFGDMEIDVKSFSNVLMVALIMALVGVALSLGSVEDATL
AARAA
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mRNA from alignment at Ecto-sp13_S_contig1913:3737..5740+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1913.6100.1 ID=mRNA_Ecto-sp13_S_contig1913.6100.1|Name=mRNA_Ecto-sp13_S_contig1913.6100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2004bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1913:3737..5740+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCTGTGCTCGGCAGTAGGGCGAAGTACACCGGTGTATGTGAGCTATCT
ATCCAGGTACGAAGGGTACATTCTGTCAAAAGCAAGCGCACTGCGTTTTT
TCTTGCGTTCCCAAGGTTGGCAGCAGCGGGGAGGTGTTGCTTGTAGAGTG
CAATAGTCTCTGTGGGTCTTGTGAGACGTGTGCTGAGCGCTGAGCCCACC
CTGCTCGCCTTTTCTCTCTCTCGCGGCTCTTCTTGCTGTGCGCTGTCCGC
GCCTGTTTGTGTGTGTGACCAGCAGGGCTGGCCAAGATGGGCGTGGGAAA
CATCTTCGTCGCGACCACTCTAGCCCCTCTGGTGATTGTGTTGGCAAGTG
TAAGCTTGCAGCTGCTCACTATCGGTCTTGAGCAGCTTGGAAAATGTAAG
TGAAACAAGATCACACCAACCCGTTGAGCGCGCTTCTGCGGTCCTCGGCC
CGTGGTGTGCTGTGTATTATGTGCTGTGTACCCTCCCCCCACCGCCTGTC
GACAAGGCCACCTTGTGTATCGCGGGGTTCAACTAGACAGAGAGAGAGAT
GATATTACCATAATAACGGTATAAGGCAAAGCTTTTTGAGGGTTGTTTTG
GCGATGGCGACACGAGCAGTTTTGGTTTTTGACCCCAAACCGCTGTCTCT
CCGACATCAAACCAAGATATAGCGGTGCAGCACTGCGGCGGGACGTAGCT
GTACAGCCGTAGATTTCGTTTCACAACTTCCGTAACATCTGACATCTTTT
TGAGTATAGCCCAGCACCGGCCAGCTTCCACACCCACCGATTCTGTATAC
CATGTATCACTGAATCCAGTGTATTCTACACCACAGACGGTGTACCGCTC
AAGCTCAAGCGTTGCCGGCACGAATCCATACTGCTTGTATGCTGTGGGAA
GGATGGGACATGTATAGGAACTGCCTCCGCAAAGAAAGTACGTTTTATTA
CGAAAGACGGGCGGGGCGCCCACAGGCCCTGACCCAAACCCTAACCCAAC
CCCAATGTCGCCGGTCCTACTTTGTCCAAATTGTTTGCTCATTTTGAAAA
ACCTGTATGAAAACAACTGCATGCAGTCAACAATATTCGACACTAATAGC
AAGAACTTTCGACACATGCATCCCCTTCGACTGCTGTGATATTTTCTCGA
ACGGGCAACCTGTCTCGCGATGGTCGTTGGTATGCACATCAAATATTTTG
ACAACGACACGGCACCCCAGAAATTGAGAGTTGATCCTCACTGATGTTTC
GGACCCGAACTGCTCAAATGCCAAGGAATATCCCCCCCGGTCTGTACCTA
CATTTGGTCCCTCCCGCTTCGCTCCATCTCTCTTATGTCTTGCATGTCCT
CGACTGTTTTCTGTTACGCACTTGAAGATGAAATCTGCACTCCCTCTCGA
CCTTCCTGTGCTCCCCTACCCCTGTGGCGCATGTTATTTTTCCTGTTCGC
TCTCCCTCCTCGCTGATCGACTGGCTATGATGGTACAGACGCGTCGCACT
CCAACAGCAAGAGCCCGCTCTATCCTTTCATCAGGAAGGCGCACTTCATC
CTCAACACACAATGCTTCGGTGAGTGAGGTACAGTACTCTACTGCGGTAG
TGTCACCTCTGCTCCGCGTTTTGGACAAGTGTTTGCAGATGGTGTCCATC
CAACATTGTCATCATGCGAAAAGTGCACCCCGGTGTCCGAAGTCTTGTCG
CAGGAACGGCTGTGCTGCATATTTAGCCTGTAGCCTCCGTTCAATTTTTC
AACTAGCCCAACCAACGGCGCTCCCACTCCAAACAGCTACTTAGCGCTCG
CTCCCTTGCCTTCCAACCACGCCAGTCGCTCCTCGTATCGGCTAACCTGC
CGGCCGTGCACGTCCGCTCTCTCGCGCAGGCGACATGGAAATCGACGTGA
AGAGCTTCTCGAACGTTCTGATGGTGGCGCTGATCATGGCGCTGGTCGGA
GTGGCGCTGTCGTTGGGCAGCGTCGAGGACGCCACATTAGCGGCCAGGGC
TGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1913:3737..5740+

>mRNA_Ecto-sp13_S_contig1913.6100.1 ID=mRNA_Ecto-sp13_S_contig1913.6100.1|Name=mRNA_Ecto-sp13_S_contig1913.6100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1913:3737..5740+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGTGGGAAACATCTTCGTCGCGACCACTCTAGCCCCTCTGGTGAT
TGTGTTGGCAAGTGTAAGCTTGCAGCTGCTCACTATCGGTCTTGAGCAGC
TTGGAAAATACGCGTCGCACTCCAACAGCAAGAGCCCGCTCTATCCTTTC
ATCAGGAAGGCGCACTTCATCCTCAACACACAATGCTTCGGCGACATGGA
AATCGACGTGAAGAGCTTCTCGAACGTTCTGATGGTGGCGCTGATCATGG
CGCTGGTCGGAGTGGCGCTGTCGTTGGGCAGCGTCGAGGACGCCACATTA
GCGGCCAGGGCTGCG
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