mRNA_Ecto-sp13_S_contig19118.6092.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19118.6092.1
Unique NamemRNA_Ecto-sp13_S_contig19118.6092.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19118.6092.1 vs. uniprot
Match: A0A6H5K8Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z3_9PHAE)

HSP 1 Score: 378 bits (970), Expect = 5.870e-123
Identity = 283/310 (91.29%), Postives = 288/310 (92.90%), Query Frame = 1 
Query:  196 SRPLVLAWAGWDRRRSSNSRDDATLRTTALRTADERMAVADDADSQRVLDSSWTHAAFRAFHEMRAGPXXXXXXXXXXXXXXXXXXXXXXGPLAGVRRLVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDGNDAALSTEPRKSPQSEPACWHIRGRLTNTATGQTIALVEGIELARSLAFETASSRKSSRGPKRLAGGXXXXXXXXXXXXXXXXELEVDKVLKPGRWTAFGALATSKFFMYQDPAKGEPMDHFRNTPVEKKQAVRTYERFSQVVSHLLQPNGRVLVVSEWGGRSVK 1125
            SRPLVLAWAGWDRRRSSNSRD+ATL+TTALRTADER AVAD ADSQRVLDSSWT AAFRAFHEMRAGPXXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EDG+DA  STEPRK PQSEPACWH+RGRLTNTATGQTIALVEG+ELARSLAFETASSRKSSRGPKR AGGXXXXXXXXXXXXXXX ELEVDK LKPGRWTAFGALATSKFFMYQDPA GEPMDHFRNTPVEKKQAVRTYERFSQVVSHLLQPNGRVLVVSEWGGRSVK
Sbjct:   68 SRPLVLAWAGWDRRRSSNSRDEATLKTTALRTADERTAVADAADSQRVLDSSWTQAAFRAFHEMRAGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGDDAGPSTEPRKRPQSEPACWHMRGRLTNTATGQTIALVEGVELARSLAFETASSRKSSRGPKRPAGGXXXXXXXXXXXXXXXGELEVDKALKPGRWTAFGALATSKFFMYQDPATGEPMDHFRNTPVEKKQAVRTYERFSQVVSHLLQPNGRVLVVSEWGGRSVK 377
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19118.6092.1 vs. uniprot
Match: D7FYF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF1_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 3.680e-64
Identity = 124/144 (86.11%), Postives = 126/144 (87.50%), Query Frame = 1 
Query:  694 IRGRLTNTATGQTIALVEGIELARSLAFETASSRKSSRGPKRLAGGXXXXXXXXXXXXXXXXELEVDKVLKPGRWTAFGALATSKFFMYQDPAKGEPMDHFRNTPVEKKQAVRTYERFSQVVSHLLQPNGRVLVVSEWGGRSVK 1125
            +RGRLTNTATGQTIALVEG+ELARSLAFETASSRKSSR P      XXXXXXXX        ELEVDK LKPGRWTAFGALATSKFFMYQDPA GEPMDHFRNTPVEKKQAVRTYERFSQVVSHLLQPNGRVLVVSEW GRSVK
Sbjct:    1 MRGRLTNTATGQTIALVEGVELARSLAFETASSRKSSRRPXXXX-XXXXXXXXXVAGAEGEGELEVDKALKPGRWTAFGALATSKFFMYQDPATGEPMDHFRNTPVEKKQAVRTYERFSQVVSHLLQPNGRVLVVSEWDGRSVK 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19118.6092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8Z3_9PHAE5.870e-12391.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF1_ECTSI3.680e-6486.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19118contigEcto-sp13_S_contig19118:387..2752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1140
Hectar predicted targeting categorysignal peptide
Exons3
Cds size1140
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462974.360881-CDS-Ecto-sp13_S_contig19118:386..5631681462974.360881-CDS-Ecto-sp13_S_contig19118:386..563Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19118 387..563 -
1681462974.3700595-CDS-Ecto-sp13_S_contig19118:1218..16691681462974.3700595-CDS-Ecto-sp13_S_contig19118:1218..1669Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19118 1219..1669 -
1681462974.3788383-CDS-Ecto-sp13_S_contig19118:2240..27521681462974.3788383-CDS-Ecto-sp13_S_contig19118:2240..2752Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19118 2241..2752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19118.6092.1prot_Ecto-sp13_S_contig19118.6092.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19118 387..2752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19118.6092.1

>prot_Ecto-sp13_S_contig19118.6092.1 ID=prot_Ecto-sp13_S_contig19118.6092.1|Name=mRNA_Ecto-sp13_S_contig19118.6092.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=380bp
MAPFVADATAAVVMAAAVLVSSSSTAVAATAGQPAPDRGAAQHHRRRPAS
SFPTAAAAATAAAATSRPLVLAWAGWDRRRSSNSRDDATLRTTALRTADE
RMAVADDADSQRVLDSSWTHAAFRAFHEMRAGPPPSSETNGGEDEGQNEG
GGGATGPLAGVRRLVSRPPKRLETTTTAAATTPKERAAKTSRNSTAGSSS
SPARREKEDGNDAALSTEPRKSPQSEPACWHIRGRLTNTATGQTIALVEG
IELARSLAFETASSRKSSRGPKRLAGGGGNGAGGAVAGAEGEGELEVDKV
LKPGRWTAFGALATSKFFMYQDPAKGEPMDHFRNTPVEKKQAVRTYERFS
QVVSHLLQPNGRVLVVSEWGGRSVKVNRC*
back to top

mRNA from alignment at Ecto-sp13_S_contig19118:387..2752-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19118.6092.1 ID=mRNA_Ecto-sp13_S_contig19118.6092.1|Name=mRNA_Ecto-sp13_S_contig19118.6092.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19118:387..2752- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACCCTTTGTTGCTGATGCCACGGCTGCGGTGGTCATGGCGGCTGC
CGTGCTGGTCTCATCATCTTCGACAGCAGTAGCAGCAACAGCAGGACAAC
CAGCACCGGACCGTGGAGCAGCTCAACACCACCGTCGACGTCCTGCTTCA
TCGTTCCCAACGGCCGCCGCCGCCGCCACTGCTGCCGCCGCCACGTCGCG
GCCGCTGGTCTTGGCGTGGGCTGGTTGGGATCGGAGACGCAGCAGCAACA
GCCGGGACGATGCAACCCTCAGAACAACAGCACTACGGACTGCCGACGAG
AGAATGGCGGTTGCCGATGATGCTGACTCCCAGCGCGTGCTCGACAGCTC
GTGGACGCATGCGGCGTTCAGAGCGTTCCACGAGATGAGAGCGGGCCCGC
CTCCTTCGTCGGAGACCAACGGCGGAGAGGACGAGGGTCAGAACGAGGGA
GGCGGTGGCGCGACGGGCCCGTTGGCAGGCGTTCGACGCCTCGTCTCGAG
GCCGCCCAAAAGGTGCGGCAGGTTTTGTTGACGTTTGAAAGATCTTGTTG
CGCCGACAGGGGTGTGGGTGTGCAGCAGATCATCAATCAAGATGGCTACC
TACGTTGTACGGTACGCACACATGTGAAACTAGAGATATGGGTATATGTG
TATGTCCACTTGCTGTCCGTGCCGTGATTCCCTGCCCTGCTGTTCGCATG
TTTTATGCTGTTTTGTTGAGTTTTGCACGGTTCGTGCACTCGCGATTACA
GCACACAGCAATGCCGGATAGCATGCCCTTCAGTCTGCGCTGCCGTACTC
CTGATTGTGGTACATTACTACTGCTGTGCTTTTGCACGCATGGAGAGTAC
CCTTGCGGAAGGTTCGTTTTGTGCGACCAGGTGTCAGCTATGCACCTCCT
CCCTCCGCCCCAGCTGCTTGCACTTTCACCACTGAAATGCGGGATGTTTT
CGCCTCTTGATCGGGTTTTGCCACTGGTGATGCCTCACACGATATTACTG
CTGTACCTCGTGTGTCCATCGGCATCATGAATCAACAACGCCACTGACGG
GGGCGGCGGCGGCGGCGGCTGTGACACGGAAAGGCTGGAAACGACGACAA
CAGCAGCCGCGACTACACCTAAAGAAAGAGCCGCCAAAACCTCGAGAAAC
TCGACGGCGGGATCTTCGTCATCGCCGGCACGGCGGGAGAAAGAGGACGG
GAACGACGCAGCGCTATCAACAGAACCACGCAAGAGCCCCCAATCCGAGC
CCGCGTGCTGGCACATACGAGGGCGGCTCACCAACACAGCCACCGGCCAA
ACCATCGCCCTCGTGGAAGGTATCGAACTGGCCAGGAGCCTGGCCTTCGA
AACCGCCTCCTCAAGAAAATCGAGCAGAGGACCGAAGAGGCTGGCGGGCG
GCGGCGGTAACGGCGCGGGCGGGGCGGTTGCCGGGGCGGAGGGAGAAGGA
GAACTGGAGGTCGACAAGGTGCTCAAGCCGGGAAGGTGGACGGCTTTCGG
GGCCCTCGCCACCAGCAAGTTTTTCATGTACCAGGTGCGGCGCGCCCGAA
ATTTACACGTGCAACAACCACTACCCCGTTGGATGTGCGTACTGGTGTGC
TCGGTGTGCGGTATCCAAAACTGCTGGACCCCCGCTTGTTTGTCTTTCCG
CTGCCGCACCACCGGTGTTTAGGAGGCTTGATGATGTCGCCGTGAATGTT
TCGGTTGTTGACGCCGCGTTTGGTAGGACATGAATTTGCGGGTTTTAGTA
GATACCTGCAGTGTTGCACTCGTGCCGGTTTCGTGGGTTCGGGTGGGAAG
ATCAGCCGATTCCTCGAGCGCCACTTGCCCGACCTAGAACAGCAAAATGG
CCGCAAGGGTGTCGAGTTGTAAAGGGGTCTCGACAAGTCACGGAAAGGAT
TGAGCAGAGCTACATTGAGCAGAGCTACAAGTATGTATAACTATGTACGT
GCGGCACAACATTCTCCCATCAAGCGAAGTCAATTTTCCCACTCTTCCCC
ATCGGCTTGTCTGTACGCCCGCTGTCTTCCTCGTCTATCATGTCCCCCTG
CGCACATGTTTTTTGCCTGTGGCGGCAGCGCACATATGCTTCGCCCTCCC
TCCCGATACACGTATGCTTCGCCCTTCGCCGCGATACGATAATAAAAGCT
GTCACTCTGGCTGTTTTGGTCTTGCTCGCAAACGCGCAGGACCCGGCAAA
GGGGGAGCCCATGGACCACTTCCGTAACACCCCGGTGGAAAAGAAGCAGG
CGGTTCGGACGTACGAGCGCTTCTCGCAGGTGGTGTCTCACCTCCTGCAG
CCCAACGGGCGGGTGCTGGTGGTCAGCGAGTGGGGCGGCCGCTCCGTGAA
GGTAAACCGATGCTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19118:387..2752-

>mRNA_Ecto-sp13_S_contig19118.6092.1 ID=mRNA_Ecto-sp13_S_contig19118.6092.1|Name=mRNA_Ecto-sp13_S_contig19118.6092.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1140bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19118:387..2752- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACCCTTTGTTGCTGATGCCACGGCTGCGGTGGTCATGGCGGCTGC
CGTGCTGGTCTCATCATCTTCGACAGCAGTAGCAGCAACAGCAGGACAAC
CAGCACCGGACCGTGGAGCAGCTCAACACCACCGTCGACGTCCTGCTTCA
TCGTTCCCAACGGCCGCCGCCGCCGCCACTGCTGCCGCCGCCACGTCGCG
GCCGCTGGTCTTGGCGTGGGCTGGTTGGGATCGGAGACGCAGCAGCAACA
GCCGGGACGATGCAACCCTCAGAACAACAGCACTACGGACTGCCGACGAG
AGAATGGCGGTTGCCGATGATGCTGACTCCCAGCGCGTGCTCGACAGCTC
GTGGACGCATGCGGCGTTCAGAGCGTTCCACGAGATGAGAGCGGGCCCGC
CTCCTTCGTCGGAGACCAACGGCGGAGAGGACGAGGGTCAGAACGAGGGA
GGCGGTGGCGCGACGGGCCCGTTGGCAGGCGTTCGACGCCTCGTCTCGAG
GCCGCCCAAAAGGCTGGAAACGACGACAACAGCAGCCGCGACTACACCTA
AAGAAAGAGCCGCCAAAACCTCGAGAAACTCGACGGCGGGATCTTCGTCA
TCGCCGGCACGGCGGGAGAAAGAGGACGGGAACGACGCAGCGCTATCAAC
AGAACCACGCAAGAGCCCCCAATCCGAGCCCGCGTGCTGGCACATACGAG
GGCGGCTCACCAACACAGCCACCGGCCAAACCATCGCCCTCGTGGAAGGT
ATCGAACTGGCCAGGAGCCTGGCCTTCGAAACCGCCTCCTCAAGAAAATC
GAGCAGAGGACCGAAGAGGCTGGCGGGCGGCGGCGGTAACGGCGCGGGCG
GGGCGGTTGCCGGGGCGGAGGGAGAAGGAGAACTGGAGGTCGACAAGGTG
CTCAAGCCGGGAAGGTGGACGGCTTTCGGGGCCCTCGCCACCAGCAAGTT
TTTCATGTACCAGGACCCGGCAAAGGGGGAGCCCATGGACCACTTCCGTA
ACACCCCGGTGGAAAAGAAGCAGGCGGTTCGGACGTACGAGCGCTTCTCG
CAGGTGGTGTCTCACCTCCTGCAGCCCAACGGGCGGGTGCTGGTGGTCAG
CGAGTGGGGCGGCCGCTCCGTGAAGGTAAACCGATGCTGA
back to top