mRNA_Ecto-sp13_S_contig1911.6088.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1911.6088.1
Unique NamemRNA_Ecto-sp13_S_contig1911.6088.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1911.6088.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.340e-36
Identity = 59/83 (71.08%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    1 SNLGCTAIWLALKRMSRLWRRRGKRFYMELLHFQVDNCVGENKNNVVMTFLSGFVAAGVIGAVEVHFLMVGHTHIKIDQVFSR 249
            SNL CTA+WLALKR+S +W + G+RFY++ LH Q+DNCVGENKNN+V+ F+ G VAAGVIG+ EV FL+VGHTHIKIDQVFSR
Sbjct:   11 SNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSR 93
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BLAST of mRNA_Ecto-sp13_S_contig1911.6088.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.450e-34
Identity = 59/83 (71.08%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    1 SNLGCTAIWLALKRMSRLWRRRGKRFYMELLHFQVDNCVGENKNNVVMTFLSGFVAAGVIGAVEVHFLMVGHTHIKIDQVFSR 249
            SNL CTA+WLALKR+S +W + G+RFY++ LH Q+DNCVGENKNN+V+ F+ G VAAGVIG+ EV FL+VGHTHIKIDQVFSR
Sbjct:   11 SNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSR 93
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BLAST of mRNA_Ecto-sp13_S_contig1911.6088.1 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.380e-32
Identity = 57/83 (68.67%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:    1 SNLGCTAIWLALKRMSRLWRRRGKRFYMELLHFQVDNCVGENKNNVVMTFLSGFVAAGVIGAVEVHFLMVGHTHIKIDQVFSR 249
            SNL CTA+WLALKR+S +W + G+RF+++ LH Q+DNCVGENKNN+VM F+ G VAAGVIG+ EV FL+VGHTH K DQVFSR
Sbjct:  238 SNLVCTALWLALKRLSEMWNKPGERFHIKRLHLQLDNCVGENKNNIVMAFIGGLVAAGVIGSAEVCFLIVGHTHTKTDQVFSR 320
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BLAST of mRNA_Ecto-sp13_S_contig1911.6088.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.810e-32
Identity = 58/83 (69.88%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    1 SNLGCTAIWLALKRMSRLWRRRGKRFYMELLHFQVDNCVGENKNNVVMTFLSGFVAAGVIGAVEVHFLMVGHTHIKIDQVFSR 249
            SNL CTA+WLALKR+S +  + G+RFY++ LH Q+DNCVGENKNN+V+ F+ G VAAGVIG+ EV FL+VGHTHIKIDQVFSR
Sbjct:  123 SNLVCTALWLALKRLSAMGTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSR 205
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BLAST of mRNA_Ecto-sp13_S_contig1911.6088.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 3.670e-32
Identity = 56/83 (67.47%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:    1 SNLGCTAIWLALKRMSRLWRRRGKRFYMELLHFQVDNCVGENKNNVVMTFLSGFVAAGVIGAVEVHFLMVGHTHIKIDQVFSR 249
            SNL CT +WLALKR+S +W + G+RF+++  H Q+DNCVGENKNN+VM F+ G VAAGVIG  EV FL++GHTHIKIDQVFSR
Sbjct:   11 SNLECTTLWLALKRLSAMWTKPGERFHIKRRHLQLDNCVGENKNNIVMAFIGGLVAAGVIGFAEVCFLILGHTHIKIDQVFSR 93
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BLAST of mRNA_Ecto-sp13_S_contig1911.6088.1 vs. uniprot
Match: A0A6H5JTH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH9_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.430e-28
Identity = 53/83 (63.86%), Postives = 67/83 (80.72%), Query Frame = 1 
Query:    1 SNLGCTAIWLALKRMSRLWRRRGKRFYMELLHFQVDNCVGENKNNVVMTFLSGFVAAGVIGAVEVHFLMVGHTHIKIDQVFSR 249
            SNL CTA+WLALKR+S +W + G+RFY++ LH Q+ NCVGE KNN+V+ F+ G VAAGV+ + EV FL+VGHT IKID VFSR
Sbjct:  285 SNLVCTALWLALKRLSAMWAKPGQRFYIKRLHLQLHNCVGEKKNNIVLAFIGGLVAAGVVVSAEVCFLIVGHTLIKIDHVFSR 367
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BLAST of mRNA_Ecto-sp13_S_contig1911.6088.1 vs. uniprot
Match: A0A6H5KUA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA0_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.000e-19
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:   67 GKRFYMELLHFQVDNCVGENKNNVVMTFLSGFVAAGVIGAVEVHFLMVGHTHIKIDQVFSR 249
            GKR Y+     QVDNCV ENKN++V+ +L   VA G+IG VEV F+ VGHTHIKIDQVFSR
Sbjct:    6 GKRPYIYRFTIQVDNCVSENKNHIVIGYLGSLVAQGIIGEVEVQFMPVGHTHIKIDQVFSR 66
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BLAST of mRNA_Ecto-sp13_S_contig1911.6088.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.560e-17
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:  106 DNCVGENKNNVVMTFLSGFVAAGVIGAVEVHFLMVGHTHIKIDQVFSR 249
            DNCVGENKNN+V+ F+ G VAAGVIG+ EV FL+VGHTHIKIDQVFSR
Sbjct:  213 DNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSR 260
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1911.6088.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 8.110e-16
Identity = 42/85 (49.41%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:    4 NLGCTAIWLALKRMSRLWRRRGKR---FYMELLHFQVDNCVGENKNNVVMTFLSGFVAAGVIGAVEVHFLMVGHTHIKIDQVFSR 249
            NL CTA  LA+ R+   +           ++  H+QVDNCV ENKNN  + +    VAA V+  VE+HF+MVGHTH KIDQVFSR
Sbjct:  188 NLACTAAHLAITRIIDKYHDSPPHPSGCIIQHAHWQVDNCVSENKNNFFLGYAGLLVAADVVRVVEIHFMMVGHTHTKIDQVFSR 272
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BLAST of mRNA_Ecto-sp13_S_contig1911.6088.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 6.260e-14
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   76 FYMELLHFQVDNCVGENKNNVVMTFLSGFVAAGVIGAVEVHFLMVGHTHIKIDQVFSR 249
            + ++  H+QVDNC  ENKNN  + F    VAA VI  VE++F+MVGHTH+KIDQ+FSR
Sbjct:   12 YLIQHAHWQVDNCASENKNNFFLGFAGLLVAASVIRVVEINFMMVGHTHMKIDQIFSR 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1911.6088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KN27_9PHAE2.340e-3671.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY2_9PHAE1.450e-3471.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK38_9PHAE1.380e-3268.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA02_9PHAE2.810e-3269.88Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR9_9PHAE3.670e-3267.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTH9_9PHAE1.430e-2863.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUA0_9PHAE3.000e-1963.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN7_9PHAE2.560e-1779.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUU1_9PHAE8.110e-1649.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCW3_9PHAE6.260e-1456.90Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1911contigEcto-sp13_S_contig1911:2870..3121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop1
Start0
Seed ortholog score63.2
Seed ortholog evalue6.9e-08
Seed eggNOG ortholog7739.XP_002587783.1
Preferred nameEXOC1
Model size252
KEGG koko:K19983
Hectar predicted targeting categorysignal anchor
GOsGO:0000145,GO:0002791,GO:0002793,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005938,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008289,GO:0009894,GO:0009898,GO:0009987,GO:0010506,GO:0016020,GO:0016192,GO:0016241,GO:0016324,GO:0017016,GO:0017048,GO:0017049,GO:0019222,GO:0019899,GO:0023052,GO:0031267,GO:0031323,GO:0031329,GO:0031503,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0034629,GO:0035091,GO:0035556,GO:0043167,GO:0043168,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044459,GO:0044464,GO:0045177,GO:0046903,GO:0048015,GO:0048017,GO:0048193,GO:0048518,GO:0048522,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051601,GO:0051641,GO:0051716,GO:0065007,GO:0070201,GO:0070727,GO:0071944,GO:0090087,GO:0098552,GO:0098562,GO:0098590,GO:0098592,GO:0098876,GO:0099023,GO:0099568,GO:1901981,GO:1902936,GO:1903530,GO:1903532,GO:1904951
Exons1
EggNOG free text desc.Exocyst complex component
EggNOG OGs38EC2@33154,3B9M0@33208,3CWXP@33213,48923@7711,KOG2148@1,KOG2148@2759
Cds size252
COG Functional cat.U
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462974.0819905-CDS-Ecto-sp13_S_contig1911:2869..31211681462974.0819905-CDS-Ecto-sp13_S_contig1911:2869..3121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1911 2870..3121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1911.6088.1prot_Ecto-sp13_S_contig1911.6088.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1911 2870..3121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1911.6088.1

>prot_Ecto-sp13_S_contig1911.6088.1 ID=prot_Ecto-sp13_S_contig1911.6088.1|Name=mRNA_Ecto-sp13_S_contig1911.6088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
SNLGCTAIWLALKRMSRLWRRRGKRFYMELLHFQVDNCVGENKNNVVMTF
LSGFVAAGVIGAVEVHFLMVGHTHIKIDQVFSR*
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mRNA from alignment at Ecto-sp13_S_contig1911:2870..3121+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1911.6088.1 ID=mRNA_Ecto-sp13_S_contig1911.6088.1|Name=mRNA_Ecto-sp13_S_contig1911.6088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1911:2870..3121+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAACCTCGGGTGTACGGCCATCTGGCTAGCCCTCAAACGGATGTCTAG
GTTGTGGAGAAGGCGCGGGAAAAGATTCTACATGGAGCTTCTCCACTTTC
AAGTCGACAATTGCGTCGGCGAGAACAAGAACAACGTCGTGATGACCTTC
TTGAGTGGTTTCGTCGCGGCCGGTGTGATCGGCGCAGTGGAGGTACACTT
TCTAATGGTCGGGCACACGCACATCAAGATCGACCAAGTGTTTTCTCGTT
GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1911:2870..3121+

>mRNA_Ecto-sp13_S_contig1911.6088.1 ID=mRNA_Ecto-sp13_S_contig1911.6088.1|Name=mRNA_Ecto-sp13_S_contig1911.6088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1911:2870..3121+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAACCTCGGGTGTACGGCCATCTGGCTAGCCCTCAAACGGATGTCTAG
GTTGTGGAGAAGGCGCGGGAAAAGATTCTACATGGAGCTTCTCCACTTTC
AAGTCGACAATTGCGTCGGCGAGAACAAGAACAACGTCGTGATGACCTTC
TTGAGTGGTTTCGTCGCGGCCGGTGTGATCGGCGCAGTGGAGGTACACTT
TCTAATGGTCGGGCACACGCACATCAAGATCGACCAAGTGTTTTCTCGTT
GA
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