mRNA_Ecto-sp13_S_contig191.6084.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig191.6084.1
Unique NamemRNA_Ecto-sp13_S_contig191.6084.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig191.6084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig191contigEcto-sp13_S_contig191:25256..25825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size570
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462973.2904332-UTR-Ecto-sp13_S_contig191:25255..254291681462973.2904332-UTR-Ecto-sp13_S_contig191:25255..25429Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig191 25256..25429 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462973.2995734-CDS-Ecto-sp13_S_contig191:25429..258251681462973.2995734-CDS-Ecto-sp13_S_contig191:25429..25825Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig191 25430..25825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig191.6084.1prot_Ecto-sp13_S_contig191.6084.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig191 25430..25825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig191.6084.1

>prot_Ecto-sp13_S_contig191.6084.1 ID=prot_Ecto-sp13_S_contig191.6084.1|Name=mRNA_Ecto-sp13_S_contig191.6084.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
MCMKTFSSLESAPILEYPSQQSCNLGCMSVIWKKEKPWLEVHPRSISTRL
SHALLLQRLRHPSLRLGVIQVEHVIFTSLLRSYVHIFVLLDREVDYLSCG
KRKKHLQIGSCVRTIVGSFVPSHITPQFYFF*
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mRNA from alignment at Ecto-sp13_S_contig191:25256..25825+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig191.6084.1 ID=mRNA_Ecto-sp13_S_contig191.6084.1|Name=mRNA_Ecto-sp13_S_contig191.6084.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig191:25256..25825+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATTTGCGTTATCGGCCCCGCTCTCGTTCACTGGAACATTTGCTTTTTTG
TTCTTGAGGAGGAGAGGTAAGCTCTCGGTTGTCGTGAGTTCTCCCTACTC
ACAAGAAAGAGTGAACAGCTCGTCCTTGATGCCATGGTACCTCCTTTGGG
ACTGCTGTGTTTGTACTTTCATACATGTGCATGAAAACATTCAGCAGTCT
GGAATCAGCGCCAATCCTGGAATATCCATCCCAGCAGTCCTGCAATCTAG
GTTGCATGTCTGTAATTTGGAAAAAAGAAAAACCATGGCTCGAAGTACAT
CCGCGCAGTATCTCCACCAGGCTCTCTCACGCACTCCTACTGCAAAGACT
TAGACACCCTTCCCTTCGACTGGGTGTTATCCAGGTCGAACATGTAATCT
TCACGTCTTTGCTGCGATCGTATGTGCATATCTTCGTACTACTAGATAGG
GAGGTGGATTACCTTTCGTGTGGAAAAAGAAAAAAGCACCTGCAAATAGG
ATCGTGCGTTCGTACCATTGTTGGCTCGTTTGTGCCATCACACATCACAC
CTCAGTTTTATTTTTTTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig191:25256..25825+

>mRNA_Ecto-sp13_S_contig191.6084.1 ID=mRNA_Ecto-sp13_S_contig191.6084.1|Name=mRNA_Ecto-sp13_S_contig191.6084.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig191:25256..25825+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCATGAAAACATTCAGCAGTCTGGAATCAGCGCCAATCCTGGAATA
TCCATCCCAGCAGTCCTGCAATCTAGGTTGCATGTCTGTAATTTGGAAAA
AAGAAAAACCATGGCTCGAAGTACATCCGCGCAGTATCTCCACCAGGCTC
TCTCACGCACTCCTACTGCAAAGACTTAGACACCCTTCCCTTCGACTGGG
TGTTATCCAGGTCGAACATGTAATCTTCACGTCTTTGCTGCGATCGTATG
TGCATATCTTCGTACTACTAGATAGGGAGGTGGATTACCTTTCGTGTGGA
AAAAGAAAAAAGCACCTGCAAATAGGATCGTGCGTTCGTACCATTGTTGG
CTCGTTTGTGCCATCACACATCACACCTCAGTTTTATTTTTTTTAA
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