mRNA_Ecto-sp13_S_contig1909.6076.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig1909.6076.1
Unique Name	mRNA_Ecto-sp13_S_contig1909.6076.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1909.6076.1 vs. uniprot
Match: D7FVQ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVQ1_ECTSI)

HSP 1 Score: 641 bits (1654), Expect = 1.600e-222
Identity = 415/514 (80.74%), Postives = 432/514 (84.05%), Query Frame = 1

Query:    1 QTKYDQVVGGLVHRGAFQLTLEGTLYGMIKEGHVALKSAAVLAREVLDGMDTGPKRFDGVDPEVVNGCSANESNGDGNNPYPTQGGFGSAAGGPDVGLAAVNQMEGRKRLEESKAGESGAEVDPEENGKQTWAAPRPQGGGSTRVDSETTGSNNSQDRGQTVLIEMKLEEGEEEGVSQTRTNRGATWGHGHDDGSCPRRNLLNVLGPCLGKTLETHQRACTRYSNQVAELEGQNAVLNARAAEASKLAEEATTEAKLWEAKHCALEQRLAEVEERSRQDLAYAEERADKACSRTVEVVELQTEKLERATPTLLDMVTGFAPRETEELGVYLLQNLEIEPDLYAHIIATKRMFE----------ADMESRAFEILEAERKIAQAEAEXXXXXXXXXXXXXXXXXXXGERGRPXXXXXXXXXXXXXXXXXXXXXXXXXXPTGKGAKKGAEKDSSKAVGXXXXXXXXXXXXXXXXGDGGAGKENETAAAASKPSSXXXXXXXXXXXXXXXGKGNKKK 1512
            +TKYDQVVGGLVHRGAFQLTLEGTLYGMIKEGHVALKSAAV+AREVLDGMDTGP+RFDGVDPEVVNGCSANESNGDG +P PTQ GFGSAAGG D+GLAA NQ EGRKRLEESKAG SGAEVDPEENGKQTWAAPRPQGGGSTR+DS  TG NNSQ+R QTVL EMKL EGEEEGVSQTRT++GATWGHGHDDGS  RRNLLNVLGPCLGKTLETH+RACTRYSNQVA+LEGQNA L ARAA A KLAEEATTEAKL EAKHCALEQRLAEVEERSRQDLA AEERADKAC RT+EVVELQTEKLERATPTLLDM+T FAPRETEELG YLL +L+IEPDLYAHI+ATKRMFE          ADMESRAFE+LEAERKIA AE  XXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXPTGKGAKKGAEK SSKAVG            XXXXGD        T  AASKPSS               GKGNKKK
Sbjct:  250 ETKYDQVVGGLVHRGAFQLTLEGTLYGMIKEGHVALKSAAVMAREVLDGMDTGPERFDGVDPEVVNGCSANESNGDGYSPCPTQRGFGSAAGGSDLGLAAANQTEGRKRLEESKAGASGAEVDPEENGKQTWAAPRPQGGGSTRIDSRRTGGNNSQERRQTVLTEMKLGEGEEEGVSQTRTDKGATWGHGHDDGSGRRRNLLNVLGPCLGKTLETHRRACTRYSNQVADLEGQNAALTARAAAACKLAEEATTEAKLLEAKHCALEQRLAEVEERSRQDLACAEERADKACLRTLEVVELQTEKLERATPTLLDMLTRFAPRETEELGAYLLHSLDIEPDLYAHIVATKRMFELQEVLAFTTKADMESRAFEMLEAERKIALAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTGKGAKKGAEKGSSKAVGGGAGKDKKPAGKXXXXGDXXXXXXXXTXXAASKPSSADKKRSSSPAKKGAAGKGNKKK 763

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1909.6076.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1909.6076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FVQ1_ECTSI	1.600e-222	80.74	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1909	contig	Ecto-sp13_S_contig1909:177..2069 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Model size	1518
Hectar predicted targeting category	other localisation
Exons	2
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-01_005930.1
Cds size	1518

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462972.903128-CDS-Ecto-sp13_S_contig1909:176..1235	1681462972.903128-CDS-Ecto-sp13_S_contig1909:176..1235	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1909 177..1235 +
1681462972.9236453-CDS-Ecto-sp13_S_contig1909:1610..2069	1681462972.9236453-CDS-Ecto-sp13_S_contig1909:1610..2069	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1909 1611..2069 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1909.6076.1	prot_Ecto-sp13_S_contig1909.6076.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig1909 177..2069 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig1909:177..2069+
coding sequence from alignment at Ecto-sp13_S_contig1909:177..2069+

protein sequence of mRNA_Ecto-sp13_S_contig1909.6076.1

>prot_Ecto-sp13_S_contig1909.6076.1 ID=prot_Ecto-sp13_S_contig1909.6076.1|Name=mRNA_Ecto-sp13_S_contig1909.6076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=506bp
QTKYDQVVGGLVHRGAFQLTLEGTLYGMIKEGHVALKSAAVLAREVLDGM
DTGPKRFDGVDPEVVNGCSANESNGDGNNPYPTQGGFGSAAGGPDVGLAA
VNQMEGRKRLEESKAGESGAEVDPEENGKQTWAAPRPQGGGSTRVDSETT
GSNNSQDRGQTVLIEMKLEEGEEEGVSQTRTNRGATWGHGHDDGSCPRRN
LLNVLGPCLGKTLETHQRACTRYSNQVAELEGQNAVLNARAAEASKLAEE
ATTEAKLWEAKHCALEQRLAEVEERSRQDLAYAEERADKACSRTVEVVEL
QTEKLERATPTLLDMVTGFAPRETEELGVYLLQNLEIEPDLYAHIIATKR
MFEADMESRAFEILEAERKIAQAEAEAAALEDAAAAAGGGGKKQKGERGR
PKSRGKGGGGADKGKSGGSKSKTKSKSPTGKGAKKGAEKDSSKAVGGGAG
KDKKPGSKSSSKGDGGAGKENETAAAASKPSSTDKKRSSSPAKKGAAGKG
NKKKK*

mRNA from alignment at Ecto-sp13_S_contig1909:177..2069+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig1909.6076.1 ID=mRNA_Ecto-sp13_S_contig1909.6076.1|Name=mRNA_Ecto-sp13_S_contig1909.6076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1893bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1909:177..2069+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACAAAGTACGATCAGGTGGTCGGAGGCTTGGTCCACCGCGGAGCTTT
TCAGCTGACGCTCGAAGGCACTCTGTACGGCATGATCAAGGAGGGCCACG
TGGCCCTCAAAAGTGCAGCGGTGCTGGCGAGAGAGGTTCTAGACGGAATG
GACACCGGCCCCAAGAGGTTCGATGGCGTCGACCCTGAGGTTGTCAATGG
CTGTAGCGCCAACGAGTCCAATGGCGACGGTAACAACCCGTATCCAACGC
AGGGAGGCTTTGGGAGTGCCGCTGGTGGTCCCGATGTTGGCCTGGCTGCG
GTGAATCAGATGGAAGGGCGGAAGCGGCTCGAAGAAAGCAAAGCGGGAGA
ATCGGGTGCGGAGGTAGACCCCGAAGAGAACGGGAAACAAACATGGGCAG
CACCTCGGCCCCAAGGCGGCGGGTCTACACGTGTTGATAGCGAAACAACC
GGGAGCAACAACTCACAGGATAGGGGCCAGACCGTGTTGATCGAAATGAA
ACTGGAAGAGGGTGAGGAGGAGGGAGTGTCTCAGACAAGAACCAACAGAG
GAGCGACTTGGGGACATGGTCATGATGATGGCAGCTGCCCGAGACGAAAC
CTTCTGAATGTGCTAGGGCCCTGCTTAGGCAAGACGCTGGAGACGCACCA
GAGAGCTTGCACGAGATACAGTAACCAAGTGGCCGAGCTAGAGGGGCAGA
ACGCCGTGCTAAATGCTAGGGCCGCCGAGGCCTCTAAGCTAGCAGAAGAA
GCGACGACAGAGGCCAAGCTGTGGGAAGCGAAGCACTGTGCGCTGGAACA
GCGACTGGCTGAAGTGGAGGAGCGCTCGAGGCAAGATCTTGCCTACGCCG
AGGAGCGCGCCGACAAAGCGTGCTCAAGAACCGTGGAGGTGGTCGAATTG
CAGACGGAGAAGCTCGAGAGGGCGACGCCGACTCTTTTGGACATGGTAAC
CGGATTTGCGCCTAGGGAGACCGAGGAGCTGGGGGTGTACCTGCTGCAAA
ACCTTGAAATCGAGCCAGACCTTTACGCCCACATCATCGCAACGAAAAGG
ATGTTTGAGGTAAGTTGCAGGCACCAATTTGTGGGTGGGGTCCGTGAAAC
GTGTTTGGTTTTTAGGCTGCTAAAGAAATTACGGTCAGATAGCACCTGTC
CATTGTGCTTTAGTCTACCCTTGCCGCATGAGGTTTGCACCTTGATCAGT
TGACGTCATGACTACCGGGGCGTAATGAGCACGCTCGTAGACACCTGTGC
TACTGCAGCCTCAACGACTAGCTTGAGGAGGTGCTCGCGTTCACAACGAA
GGTGAGGCGCATTTTCAACTGAAGGCTGTGCATTGTAGCGACCAGGGCCA
GTGTAGCTGGTCTTCTCAAAACATAGAAACACTTTCTGATCGGCCAGTGT
TTCCATCTCGTGACCGTCACATGTTTAAGCGCAGGCTGATATGGAATCTC
GCGCCTTTGAGATACTCGAAGCAGAGCGGAAGATCGCCCAGGCAGAGGCA
GAAGCTGCAGCACTGGAGGACGCTGCCGCGGCAGCCGGCGGCGGCGGCAA
AAAGCAAAAGGGGGAGAGGGGCCGCCCCAAATCGAGAGGCAAGGGAGGGG
GCGGGGCTGACAAGGGCAAGAGTGGAGGGAGCAAATCGAAAACGAAGAGC
AAATCACCAACAGGAAAGGGAGCGAAGAAGGGGGCTGAGAAAGATAGCAG
CAAGGCCGTCGGAGGAGGGGCAGGCAAGGACAAAAAGCCGGGTAGCAAAA
GCAGTAGCAAGGGTGACGGAGGGGCGGGAAAAGAAAACGAGACGGCTGCG
GCGGCAAGCAAACCGTCCTCGACGGACAAGAAACGGTCTTCCAGTCCGGC
CAAGAAGGGAGCAGCTGGAAAGGGGAACAAGAAGAAAAAGTAA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1909:177..2069+

>mRNA_Ecto-sp13_S_contig1909.6076.1 ID=mRNA_Ecto-sp13_S_contig1909.6076.1|Name=mRNA_Ecto-sp13_S_contig1909.6076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1518bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1909:177..2069+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACAAAGTACGATCAGGTGGTCGGAGGCTTGGTCCACCGCGGAGCTTT
TCAGCTGACGCTCGAAGGCACTCTGTACGGCATGATCAAGGAGGGCCACG
TGGCCCTCAAAAGTGCAGCGGTGCTGGCGAGAGAGGTTCTAGACGGAATG
GACACCGGCCCCAAGAGGTTCGATGGCGTCGACCCTGAGGTTGTCAATGG
CTGTAGCGCCAACGAGTCCAATGGCGACGGTAACAACCCGTATCCAACGC
AGGGAGGCTTTGGGAGTGCCGCTGGTGGTCCCGATGTTGGCCTGGCTGCG
GTGAATCAGATGGAAGGGCGGAAGCGGCTCGAAGAAAGCAAAGCGGGAGA
ATCGGGTGCGGAGGTAGACCCCGAAGAGAACGGGAAACAAACATGGGCAG
CACCTCGGCCCCAAGGCGGCGGGTCTACACGTGTTGATAGCGAAACAACC
GGGAGCAACAACTCACAGGATAGGGGCCAGACCGTGTTGATCGAAATGAA
ACTGGAAGAGGGTGAGGAGGAGGGAGTGTCTCAGACAAGAACCAACAGAG
GAGCGACTTGGGGACATGGTCATGATGATGGCAGCTGCCCGAGACGAAAC
CTTCTGAATGTGCTAGGGCCCTGCTTAGGCAAGACGCTGGAGACGCACCA
GAGAGCTTGCACGAGATACAGTAACCAAGTGGCCGAGCTAGAGGGGCAGA
ACGCCGTGCTAAATGCTAGGGCCGCCGAGGCCTCTAAGCTAGCAGAAGAA
GCGACGACAGAGGCCAAGCTGTGGGAAGCGAAGCACTGTGCGCTGGAACA
GCGACTGGCTGAAGTGGAGGAGCGCTCGAGGCAAGATCTTGCCTACGCCG
AGGAGCGCGCCGACAAAGCGTGCTCAAGAACCGTGGAGGTGGTCGAATTG
CAGACGGAGAAGCTCGAGAGGGCGACGCCGACTCTTTTGGACATGGTAAC
CGGATTTGCGCCTAGGGAGACCGAGGAGCTGGGGGTGTACCTGCTGCAAA
ACCTTGAAATCGAGCCAGACCTTTACGCCCACATCATCGCAACGAAAAGG
ATGTTTGAGGCTGATATGGAATCTCGCGCCTTTGAGATACTCGAAGCAGA
GCGGAAGATCGCCCAGGCAGAGGCAGAAGCTGCAGCACTGGAGGACGCTG
CCGCGGCAGCCGGCGGCGGCGGCAAAAAGCAAAAGGGGGAGAGGGGCCGC
CCCAAATCGAGAGGCAAGGGAGGGGGCGGGGCTGACAAGGGCAAGAGTGG
AGGGAGCAAATCGAAAACGAAGAGCAAATCACCAACAGGAAAGGGAGCGA
AGAAGGGGGCTGAGAAAGATAGCAGCAAGGCCGTCGGAGGAGGGGCAGGC
AAGGACAAAAAGCCGGGTAGCAAAAGCAGTAGCAAGGGTGACGGAGGGGC
GGGAAAAGAAAACGAGACGGCTGCGGCGGCAAGCAAACCGTCCTCGACGG
ACAAGAAACGGTCTTCCAGTCCGGCCAAGAAGGGAGCAGCTGGAAAGGGG
AACAAGAAGAAAAAGTAA