mRNA_Ecto-sp13_S_contig19085.6074.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: D7FRR9_ECTSI (rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR9_ECTSI) HSP 1 Score: 278 bits (711), Expect = 1.350e-83 Identity = 150/210 (71.43%), Postives = 152/210 (72.38%), Query Frame = 1
Query: 1 GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVDHNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLEGEVVRVDPALGLLLAVRNEVVREIPASPV--------------------------------------------TIGAYVHISRISDERVEHVEKSYKPGQKV 498
GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVDHNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLM+MR PSGLPPTGALLEGEVVRVDPALGLLL V + TIGAYVHISRISDERVEHVEKSYKPGQKV
Sbjct: 327 GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVDHNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMEMRTPSGLPPTGALLEGEVVRVDPALGLLLTVPSTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKWKTIGAYVHISRISDERVEHVEKSYKPGQKV 536
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: A0A6H5LPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPP1_9PHAE) HSP 1 Score: 271 bits (694), Expect = 2.620e-81 Identity = 151/215 (70.23%), Postives = 155/215 (72.09%), Query Frame = 1
Query: 1 GTSFDLRSLKPGMLVDAIVDSVLSNGILV--SFLGYFAGCVDHNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLEGEVVRVDPALGLLLAVRN-------EVVREIPASPV----------------------------------------TIGAYVHISRISDERVEHVEKSYKPGQKV 498
GTSFDLRSLKPGMLVDAIVDSVLSNGILV SFLGYFAGCVDHNNMPLVS DGKDEPKGWR LFRPGPEPVRARVLLVDYVNKAIRLT RPHLM+MRAPSGLPPTGALL+GEVVRVDPALGLLL V + EV PA+ TIGAYVHISRISDERVEHVEKSYKPGQKV
Sbjct: 374 GTSFDLRSLKPGMLVDAIVDSVLSNGILVRVSFLGYFAGCVDHNNMPLVSADGKDEPKGWRALFRPGPEPVRARVLLVDYVNKAIRLTFRPHLMEMRAPSGLPPTGALLDGEVVRVDPALGLLLTVPSTEKDDGSEVAGNAPAAKKERGQGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKWKTIGAYVHISRISDERVEHVEKSYKPGQKV 588
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: A0A2V0P3Y3_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P3Y3_9CHLO) HSP 1 Score: 121 bits (304), Expect = 7.510e-29 Identity = 72/171 (42.11%), Postives = 101/171 (59.06%), Query Frame = 1
Query: 1 GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVDHNNM--PLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLEGEVVR-VDPALGLLLAVRNEVVREIPASPVTIGAYVHISRISDERVEHVEKSYKPGQKVCA 504
G L L PGMLV A V SVLS+G+LV+FL YF G +DH ++ P+ S D W ++ G + ++AR+L VD+ +K L+L PHL++ R P+ +P G + + VR VDPALGLLL ++P SP A+ H+S ++D R E EK +KPGQ V A
Sbjct: 310 GGGLTLAGLLPGMLVTAKVRSVLSDGLLVTFLTYFNGTIDHYHLADPIPSDD-------WAARYQEG-QKLKARILYVDFASKRAGLSLLPHLLNCRMPTVVPMLGEIFDAATVRRVDPALGLLL--------QLPTSPSPAAAFAHVSNLADGRTERPEKVFKPGQAVRA 464
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: I0YYB1_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YYB1_COCSC) HSP 1 Score: 115 bits (288), Expect = 1.050e-26 Identity = 74/165 (44.85%), Postives = 100/165 (60.61%), Query Frame = 1
Query: 16 LRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVDHNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLEGEVVR-VDPALGLLLAVRNEVVREIPAS-PVTIGAYVHISRISDERVEHVEKSYKPGQKVCA 504
+ SL PGMLV+A V +VLS+G+LVSFL YF G VD ++ + P W+ + G VRAR++ VD V+K + L+L PHL+ A LPP L E +VR VD ALGLLL +R+E + PA P Y HIS +S+ R+E ++K YK G+KV A
Sbjct: 194 IGSLLPGMLVNARVRNVLSDGLLVSFLTYFNGTVDCFHLSQ-----QPPPADWQKGYEAGAR-VRARIIYVDPVSKRVSLSLLPHLVAGSASPALPPINTLFEHSIVRRVDNALGLLLELRSE--DDAPAEQPNAPAGYAHISAVSESRIEKLDKVYKVGKKVAA 350
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: A0A5B7AEH9_DAVIN (Uncharacterized protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7AEH9_DAVIN) HSP 1 Score: 112 bits (280), Expect = 1.250e-25 Identity = 69/169 (40.83%), Postives = 101/169 (59.76%), Query Frame = 1
Query: 1 GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVD--HNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLE-GEVVRVDPALGLLLAVRNEVVREIPASPVTIGAYVHISRISDERVEHVEKSYKPGQKV 498
G S DL L PGM+V+A V S+L NGI++SFL YF G VD H + + KD+ + V AR+L +D +A+ LTL PHL+ +AP L TG + + +V+RVD LGLLL E+P+SPV AYV+++ ++D++V ++EKS+K G +V
Sbjct: 209 GISIDL--LVPGMMVNARVQSILENGIMLSFLTYFTGTVDIFHLQKTFPTSNWKDDYNQNKK--------VNARILFIDPSTRAVGLTLNPHLVHNKAPPSLVKTGDIFDHSKVIRVDRGLGLLL--------EVPSSPVPTPAYVNVADVADKKVRNLEKSFKEGSRV 359
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: UPI001263E62C (rRNA biogenesis protein RRP5 n=2 Tax=Anacardiaceae TaxID=4011 RepID=UPI001263E62C) HSP 1 Score: 105 bits (262), Expect = 3.280e-23 Identity = 71/171 (41.52%), Postives = 96/171 (56.14%), Query Frame = 1
Query: 1 GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVD----HNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLE-GEVVRVDPALGLLLAVRNEVVREIPASPVTIGAYVHISRISDERVEHVEKSYKPGQKV 498
G S DL L PGM+V A V S+L NGI++SFL YF G VD N P + WR + + V AR+L VD ++AI LTL P+L+ +AP G + + +VVRVD LGLLL +IP +P +I AYV IS +++E V+ +EK YK G +V
Sbjct: 307 GISIDL--LIPGMMVSARVQSILENGIMLSFLTYFTGTVDIFHLQNTFPTTN---------WRNDYSQNKK-VNARILFVDPSSRAIGLTLNPYLLHNKAPPSHVKIGDIYDQSKVVRVDRGLGLLL--------DIPTTPASIPAYVSISDVAEEEVKKLEKKYKEGTRV 457
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: A0A0W8DSU2_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DSU2_PHYNI) HSP 1 Score: 104 bits (260), Expect = 5.940e-23 Identity = 65/180 (36.11%), Postives = 101/180 (56.11%), Query Frame = 1
Query: 1 GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVDHNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLEGEVV-RVDPALGLLLAVRN--EVVREIPASPV---TIGA--------YVHISRISDERVEHVEKSYKPGQKV 498
G SF L+ L PGML++ V+ VL NG+ V+FL +F V+ N+M L +GW +R G + RAR++ +DY+ K I L++ PH++ M+ P L G ++E + R+D +G+LL+++N E V AS T A YVHIS +SD+RV+ +EK + G +
Sbjct: 263 GDSFTLKQLVPGMLLNVRVEDVLENGLSVTFLTFFTATVEQNHMSLPCE------RGWEESYRKGMK-ARARIISIDYIAKQITLSMAPHVVHMQVPESLFSVGDIIEEATIERIDAGVGMLLSLKNQDEDVEMGDASDKKESTTNAKWKAFAPGYVHISNVSDKRVDKLEKKFTVGSSI 435
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: W2QFF6_PHYPN (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2QFF6_PHYPN) HSP 1 Score: 104 bits (260), Expect = 6.090e-23 Identity = 65/180 (36.11%), Postives = 101/180 (56.11%), Query Frame = 1
Query: 1 GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVDHNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLEGEVV-RVDPALGLLLAVRN--EVVREIPASPV---TIGA--------YVHISRISDERVEHVEKSYKPGQKV 498
G SF L+ L PGML++ V+ VL NG+ V+FL +F V+ N+M L +GW +R G + RAR++ +DY+ K I L++ PH++ M+ P L G ++E + R+D +G+LL+++N E V AS T A YVHIS +SD+RV+ +EK + G +
Sbjct: 263 GDSFTLKQLVPGMLLNVRVEDVLENGLSVTFLTFFTATVEQNHMSLPCE------RGWEESYRKGMK-ARARIISIDYIAKQITLSMAPHVVHMQVPESLFSVGDIIEEATIERIDAGVGMLLSLKNQDEDVEMGDASDKKESTTNAKWKAFAPGYVHISNVSDKRVDKLEKKFTVGSSI 435
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: A0A484DYK6_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DYK6_BRELC) HSP 1 Score: 104 bits (260), Expect = 6.090e-23 Identity = 59/180 (32.78%), Postives = 105/180 (58.33%), Query Frame = 1
Query: 1 GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVDHNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLEG-EVVRVDPALGLLLAVRNE---------VVREIPASPVT----IGAYVHISRISDERVEHVEKSYKPGQKV 498
G +F L+ L PGML++ VD +L NG+ V+FL +F V+ N+M L +GW+ L+R G + RAR++ +D K I L++ PH++ ++ P L G ++E + R+D +G+LL+++++ V++ S ++ + YVHIS++SD+RV+ +EK +K G +
Sbjct: 268 GDAFALKQLIPGMLLNVRVDEILENGLSVTFLTFFTATVEENHMSLPCE------RGWQELYRRGLK-ARARIVSIDATTKQITLSMAPHVVHLQVPESLYSIGDIIENASIERIDAGIGMLLSLKSKDEDVTMEGGSVKKSATSHLSWKDFVPGYVHISKVSDKRVDKLEKKFKVGSTI 440
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: A0A2H5MXP0_CITUN (Uncharacterized protein n=8 Tax=Citrus TaxID=2706 RepID=A0A2H5MXP0_CITUN) HSP 1 Score: 103 bits (257), Expect = 1.540e-22 Identity = 69/171 (40.35%), Postives = 95/171 (55.56%), Query Frame = 1
Query: 1 GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVD----HNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLE-GEVVRVDPALGLLLAVRNEVVREIPASPVTIGAYVHISRISDERVEHVEKSYKPGQKV 498
G S DL L PGM+V A V S+L NG+++SFL YF G VD N P + W+ + + V AR+L VD ++A+ LTL P+L+ RAP G + + +VVRVD LGLLL +IP++PV+ AYV IS +++E V +EK YK G V
Sbjct: 312 GISIDL--LVPGMMVTARVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN---------WKNDYNQHKK-VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLL--------DIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSYV 462 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19085.6074.1 >prot_Ecto-sp13_S_contig19085.6074.1 ID=prot_Ecto-sp13_S_contig19085.6074.1|Name=mRNA_Ecto-sp13_S_contig19085.6074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=168bp GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVDHNNMPLVSGDback to top mRNA from alignment at Ecto-sp13_S_contig19085:54..1749+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19085.6074.1 ID=mRNA_Ecto-sp13_S_contig19085.6074.1|Name=mRNA_Ecto-sp13_S_contig19085.6074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1696bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19085:54..1749+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19085:54..1749+ >mRNA_Ecto-sp13_S_contig19085.6074.1 ID=mRNA_Ecto-sp13_S_contig19085.6074.1|Name=mRNA_Ecto-sp13_S_contig19085.6074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19085:54..1749+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |