mRNA_Ecto-sp13_S_contig1906.6064.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1906.6064.1
Unique NamemRNA_Ecto-sp13_S_contig1906.6064.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1906.6064.1 vs. uniprot
Match: D7G3H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H8_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 2.240e-62
Identity = 115/142 (80.99%), Postives = 119/142 (83.80%), Query Frame = 1 
Query:    1 QASVSTGAVLSPGRYVVIPSYTGCVTKSQA-QGYSEVGTKNNHPVGVYNNVPLGKDEAPHQDSNSGHLLRTAESTPRQTGNEKMWREGAGAKKGREGEEDSKKEAELRLSFDQPEILKGLMAMFEGLDADCDGVLCREEVRA 423
            QASVSTG VL PGRYVVIPSYTGCVTK QA QG SE+G KNNHPV         KDEAPHQDSNSGH LRTAES PR+T NEK WREGA AKKGREGEEDSKKEAE+ LSFDQPEILKGLM MFEGLDADCDGVLCREE+ A
Sbjct:  682 QASVSTGTVLFPGRYVVIPSYTGCVTKDQALQGNSELGNKNNHPVXXXXXXXXXKDEAPHQDSNSGHPLRTAESNPRETSNEKTWREGAEAKKGREGEEDSKKEAEVGLSFDQPEILKGLMTMFEGLDADCDGVLCREELDA 823
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1906.6064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3H8_ECTSI2.240e-6280.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1906contigEcto-sp13_S_contig1906:6298..6884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score219.9
Seed ortholog evalue7.8e-55
Seed eggNOG ortholog2880.D7G3H8
Model size589
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
Cds size450
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462972.1316538-CDS-Ecto-sp13_S_contig1906:6297..67471681462972.1316538-CDS-Ecto-sp13_S_contig1906:6297..6747Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1906 6298..6747 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462972.1445494-UTR-Ecto-sp13_S_contig1906:6747..68841681462972.1445494-UTR-Ecto-sp13_S_contig1906:6747..6884Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1906 6748..6884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1906.6064.1prot_Ecto-sp13_S_contig1906.6064.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1906 6298..6747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1906.6064.1

>prot_Ecto-sp13_S_contig1906.6064.1 ID=prot_Ecto-sp13_S_contig1906.6064.1|Name=mRNA_Ecto-sp13_S_contig1906.6064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=150bp
QASVSTGAVLSPGRYVVIPSYTGCVTKSQAQGYSEVGTKNNHPVGVYNNV
PLGKDEAPHQDSNSGHLLRTAESTPRQTGNEKMWREGAGAKKGREGEEDS
KKEAELRLSFDQPEILKGLMAMFEGLDADCDGVLCREEVRARDRAHLAV*
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mRNA from alignment at Ecto-sp13_S_contig1906:6298..6884+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1906.6064.1 ID=mRNA_Ecto-sp13_S_contig1906.6064.1|Name=mRNA_Ecto-sp13_S_contig1906.6064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=587bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1906:6298..6884+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCTTCCGTTTCCACGGGGGCTGTCCTGTCCCCGGGGAGGTACGTTGT
CATCCCCTCCTACACCGGGTGTGTCACTAAATCCCAGGCCCAGGGGTACT
CAGAGGTGGGCACCAAGAACAATCATCCCGTCGGGGTGTACAATAATGTT
CCTTTGGGAAAGGATGAAGCTCCTCACCAAGATTCGAACAGCGGGCACCT
CTTGCGGACTGCAGAAAGCACCCCCCGCCAGACAGGCAACGAAAAGATGT
GGAGGGAAGGAGCCGGAGCAAAGAAAGGGCGCGAGGGCGAGGAGGACTCG
AAGAAGGAGGCGGAGCTACGGTTGTCGTTCGATCAACCCGAGATCTTGAA
GGGGCTGATGGCCATGTTCGAGGGCCTCGATGCGGACTGTGACGGCGTCC
TTTGCAGGGAAGAGGTAAGGGCGCGAGACCGGGCGCATCTTGCGGTCTGA
AGGCACAACCCGGGCGTCTCGACGCTACGTGTTCGGGGAGAAGTTTGCTG
TCGCTCATGCTGTTCGGGTGGGGATAAGGTTGAAGGTTGTTCTTTCGAAC
TCGGCGCTAAGTGCGACGGCGCCTCATCCACAGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1906:6298..6884+

>mRNA_Ecto-sp13_S_contig1906.6064.1 ID=mRNA_Ecto-sp13_S_contig1906.6064.1|Name=mRNA_Ecto-sp13_S_contig1906.6064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1906:6298..6884+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCTTCCGTTTCCACGGGGGCTGTCCTGTCCCCGGGGAGGTACGTTGT
CATCCCCTCCTACACCGGGTGTGTCACTAAATCCCAGGCCCAGGGGTACT
CAGAGGTGGGCACCAAGAACAATCATCCCGTCGGGGTGTACAATAATGTT
CCTTTGGGAAAGGATGAAGCTCCTCACCAAGATTCGAACAGCGGGCACCT
CTTGCGGACTGCAGAAAGCACCCCCCGCCAGACAGGCAACGAAAAGATGT
GGAGGGAAGGAGCCGGAGCAAAGAAAGGGCGCGAGGGCGAGGAGGACTCG
AAGAAGGAGGCGGAGCTACGGTTGTCGTTCGATCAACCCGAGATCTTGAA
GGGGCTGATGGCCATGTTCGAGGGCCTCGATGCGGACTGTGACGGCGTCC
TTTGCAGGGAAGAGGTAAGGGCGCGAGACCGGGCGCATCTTGCGGTCTGA
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