mRNA_Ecto-sp13_S_contig1906.6066.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1906.6066.1
Unique NamemRNA_Ecto-sp13_S_contig1906.6066.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1906.6066.1 vs. uniprot
Match: D7G3H9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H9_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.120e-15
Identity = 41/58 (70.69%), Postives = 44/58 (75.86%), Query Frame = -1 
Query:   63 HVPKDGNARRTTTASVFHIVIQYPVVG-CCRETAFWGLLPQVLWLLDEHQGISYSGKK 233
            +VPKDGN RRTTTASVFHIVIQYP  G       F G+  QV+WLLDEHQGIS SGKK
Sbjct:   19 YVPKDGNVRRTTTASVFHIVIQYPASGWMLLGDCFLGITSQVVWLLDEHQGISCSGKK 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1906.6066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3H9_ECTSI1.120e-1570.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1906contigEcto-sp13_S_contig1906:11803..13886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2084
Hectar predicted targeting categoryother localisation
Exons1
Cds size1152
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462971.9914331-UTR-Ecto-sp13_S_contig1906:11802..120321681462971.9914331-UTR-Ecto-sp13_S_contig1906:11802..12032Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1906 11803..12032 +
1681462972.012768-UTR-Ecto-sp13_S_contig1906:13184..138861681462972.012768-UTR-Ecto-sp13_S_contig1906:13184..13886Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1906 13185..13886 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462972.0027301-CDS-Ecto-sp13_S_contig1906:12032..131841681462972.0027301-CDS-Ecto-sp13_S_contig1906:12032..13184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1906 12033..13184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1906.6066.1prot_Ecto-sp13_S_contig1906.6066.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1906 12033..13184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1906.6066.1

>prot_Ecto-sp13_S_contig1906.6066.1 ID=prot_Ecto-sp13_S_contig1906.6066.1|Name=mRNA_Ecto-sp13_S_contig1906.6066.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=384bp
MSNCMYCAEPVNSWSLNVCSFAASPTPLFKTKRTTERKQLRRRESKTERL
GTFSLTLLRWLTPSDSPMDSSTIRLLEANNAPPTPTKKGFQIPAREQQAS
DPKHSPRGNKIRDSGNNPTLHRDAQPAKKLWQPSSDGTTKKEHTFPPQDL
NINVSSFLPYHRLHTTPHTPRPIFKARLLDDEARAESKRCFLGKLSTRRR
LQRRRSRRRHFPPENRALKKRRRGCDILCNLRHPFVKQTACHFSVEQAPL
FLNPLTHRPTNLFHTLYATPNPARGAQPVREIPSHPQRAFQINRGSVCGK
RAAKQEVPEESNDCLHKPSAAHKSMPYPSQLIWGCLSMVPRPRWAINPSH
HPQVPGFLFYTGIGMTSAGGFTSATEQKKSVMM*
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mRNA from alignment at Ecto-sp13_S_contig1906:11803..13886+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1906.6066.1 ID=mRNA_Ecto-sp13_S_contig1906.6066.1|Name=mRNA_Ecto-sp13_S_contig1906.6066.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2084bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1906:11803..13886+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCATAAAATAAACAAGGGCGTTCGATCTACTTCGTCTTCAGACTTTCGTT
CTGAGTGCCCTTCTTCTTGCCACTATAGCTAATACCCTGATGTTCGTCTA
ACAACCACAGGACTTGGGGAAGTAATCCCCAGAAAGCAGTCTCCCGGCAG
CATCCAACCACTGGGTACTGAATAACAATGTGAAAAACAGATGCGGTGGT
GGTACGCCTAGCGTTGCCATCTTTCGGCACATGAGCAACTGCATGTACTG
CGCGGAGCCGGTAAATAGTTGGTCCTTGAACGTGTGCTCCTTTGCTGCCT
CACCAACACCACTCTTCAAAACAAAACGAACAACTGAAAGAAAACAGCTA
CGGCGAAGGGAAAGCAAAACCGAACGTCTCGGCACCTTTTCTCTAACATT
GCTAAGATGGCTGACCCCCTCTGACTCTCCGATGGATTCGTCCACCATCC
GTCTCCTAGAAGCCAACAACGCCCCCCCCACCCCAACAAAAAAAGGCTTC
CAAATACCCGCACGTGAACAGCAAGCCTCAGATCCGAAACATTCGCCTAG
AGGCAACAAAATCAGGGATTCCGGGAACAACCCCACGCTTCATCGGGACG
CCCAGCCGGCCAAAAAATTATGGCAGCCATCATCGGATGGCACGACTAAA
AAAGAACACACTTTTCCACCCCAAGACCTCAACATCAATGTCTCTTCCTT
CCTACCGTATCATAGGTTGCATACGACACCACACACCCCTAGACCGATTT
TCAAAGCTCGATTACTCGACGACGAAGCGCGCGCCGAGTCCAAACGATGC
TTTTTGGGAAAGCTTTCGACGAGACGACGGTTACAACGCCGCCGTTCTCG
GCGCCGTCATTTTCCTCCCGAGAATCGGGCTTTGAAAAAGCGGCGCAGGG
GGTGTGATATCTTATGCAACCTACGGCATCCCTTCGTCAAACAAACCGCG
TGTCATTTTTCCGTGGAACAAGCTCCCCTTTTTCTCAACCCACTAACTCA
TCGTCCCACCAACCTATTCCACACGCTATACGCTACCCCCAATCCCGCAC
GGGGAGCACAACCGGTTCGCGAGATTCCTTCACACCCACAACGCGCTTTC
CAAATAAACCGCGGCAGTGTGTGTGGGAAGCGTGCCGCAAAACAAGAAGT
ACCTGAAGAGAGCAATGATTGCCTCCATAAGCCCTCCGCCGCGCACAAAT
CCATGCCATATCCGTCTCAATTAATTTGGGGTTGTTTGTCAATGGTTCCA
AGACCAAGGTGGGCTATAAACCCATCCCATCATCCCCAGGTCCCGGGGTT
TCTATTCTACACCGGGATCGGGATGACCTCTGCGGGTGGGTTCACATCCG
CAACAGAACAAAAAAAAAGCGTGATGATGTGATTGCCCAGCGGTGGTCAT
CTGTTCGAGGAGGTCATGCACCATTTTCACTCGCGCGACTGTGTCAGAGA
AAACGGACACACTTGCCGACGAATATCAACTGGAGCAAAAGCAAGTACCA
TTACCACCACGATAATCAACAACCGGAAAGACAACAAAACCAACTCCCAG
CTCCCACGAACATCGATAAGAGCAATGGAATAAAAACCCCTCTCCCCAAC
CTACTAACGTAAAGCACCAGCAAGCAAAAATATACCCCTCTAACATCTCC
CGCGAATATCAACAGAGGCAACCAACCCCACCCCATCCTCTTCCGTCTCC
ATTGCCACGGAAACAAACAATGCTGCGGGAACAAAAAACGACCTGGGAAA
TGCCCCCTGGCGTGGGCGTGGTGGGTGTAAAACATGCACGTGAGGAGATT
GCGGTTATCTCGCAAACCACCCAGACCGCTAACAAAAAAACAGAGCGCAC
GGGTCGTGATACCTAGCGTAACAAAATGTTACGAGATCGTGACAACCACA
TAGATCAACAACGTCTCAAAGAATGGGTGTAAAACATTTACGTGAGGAGA
CTGCGATCATGTCTCGGAAAGCCACCCAGATCGCGACCGAAAAAAATAGT
GCGCACGGGTCATCTAATAGCTAGCGCACGTCACAGAACGAGATCATAGC
GACAACCACATGCACGTTTTCTCAAGCATCTCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1906:11803..13886+

>mRNA_Ecto-sp13_S_contig1906.6066.1 ID=mRNA_Ecto-sp13_S_contig1906.6066.1|Name=mRNA_Ecto-sp13_S_contig1906.6066.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1152bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1906:11803..13886+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAACTGCATGTACTGCGCGGAGCCGGTAAATAGTTGGTCCTTGAA
CGTGTGCTCCTTTGCTGCCTCACCAACACCACTCTTCAAAACAAAACGAA
CAACTGAAAGAAAACAGCTACGGCGAAGGGAAAGCAAAACCGAACGTCTC
GGCACCTTTTCTCTAACATTGCTAAGATGGCTGACCCCCTCTGACTCTCC
GATGGATTCGTCCACCATCCGTCTCCTAGAAGCCAACAACGCCCCCCCCA
CCCCAACAAAAAAAGGCTTCCAAATACCCGCACGTGAACAGCAAGCCTCA
GATCCGAAACATTCGCCTAGAGGCAACAAAATCAGGGATTCCGGGAACAA
CCCCACGCTTCATCGGGACGCCCAGCCGGCCAAAAAATTATGGCAGCCAT
CATCGGATGGCACGACTAAAAAAGAACACACTTTTCCACCCCAAGACCTC
AACATCAATGTCTCTTCCTTCCTACCGTATCATAGGTTGCATACGACACC
ACACACCCCTAGACCGATTTTCAAAGCTCGATTACTCGACGACGAAGCGC
GCGCCGAGTCCAAACGATGCTTTTTGGGAAAGCTTTCGACGAGACGACGG
TTACAACGCCGCCGTTCTCGGCGCCGTCATTTTCCTCCCGAGAATCGGGC
TTTGAAAAAGCGGCGCAGGGGGTGTGATATCTTATGCAACCTACGGCATC
CCTTCGTCAAACAAACCGCGTGTCATTTTTCCGTGGAACAAGCTCCCCTT
TTTCTCAACCCACTAACTCATCGTCCCACCAACCTATTCCACACGCTATA
CGCTACCCCCAATCCCGCACGGGGAGCACAACCGGTTCGCGAGATTCCTT
CACACCCACAACGCGCTTTCCAAATAAACCGCGGCAGTGTGTGTGGGAAG
CGTGCCGCAAAACAAGAAGTACCTGAAGAGAGCAATGATTGCCTCCATAA
GCCCTCCGCCGCGCACAAATCCATGCCATATCCGTCTCAATTAATTTGGG
GTTGTTTGTCAATGGTTCCAAGACCAAGGTGGGCTATAAACCCATCCCAT
CATCCCCAGGTCCCGGGGTTTCTATTCTACACCGGGATCGGGATGACCTC
TGCGGGTGGGTTCACATCCGCAACAGAACAAAAAAAAAGCGTGATGATGT
GA
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