mRNA_Ecto-sp13_S_contig19053.6060.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19053.6060.1
Unique NamemRNA_Ecto-sp13_S_contig19053.6060.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19053.6060.1 vs. uniprot
Match: D7G6Q7_ECTSI (PYlqF, plastid YlqF/RbgA-like GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Q7_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 2.330e-53
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 1 
Query:  385 RVTGRGGLSTTVMAAGWRDKEDGPSIDPFDEAKMNAQGQHVINWYPGHIAKAERQLQDYLNMVDVVVEVRDCRIPAATTHQLVPSWVGKR 654
            RVTGRGGLST VMAAGWRDKEDGP+IDPFDE KMNAQGQHVINWYPGHIAKAERQLQDYLNMVDVVVEVRDCRIPAATTHQLVPSWVGKR
Sbjct:  130 RVTGRGGLSTAVMAAGWRDKEDGPAIDPFDEGKMNAQGQHVINWYPGHIAKAERQLQDYLNMVDVVVEVRDCRIPAATTHQLVPSWVGKR 219
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BLAST of mRNA_Ecto-sp13_S_contig19053.6060.1 vs. uniprot
Match: A0A4D9DA39_9STRA (G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA39_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.070e-18
Identity = 49/85 (57.65%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:  415 TVMAAGWRDKEDGPSIDPF-----DEAKMNAQGQHVINWYPGHIAKAERQLQDYLNMVDVVVEVRDCRIPAATTHQLVPSWVGKR 654
            T M AG R  + G   +P      DE  ++   +HVINWYPGHIAKAER+LQD+L +VDVVVE RD RIP ATTH LV  WVG+R
Sbjct:   66 TAMGAGGR--KSGEVQEPDFGFRPDEEDVSV-SRHVINWYPGHIAKAERELQDFLKLVDVVVEARDARIPTATTHPLVRQWVGRR 147
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BLAST of mRNA_Ecto-sp13_S_contig19053.6060.1 vs. uniprot
Match: A0A0G4F733_9ALVE (G domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4F733_9ALVE)

HSP 1 Score: 91.7 bits (226), Expect = 8.790e-18
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:  415 TVMAAGWRDKEDGPSIDPFDEAKMNAQGQHVINWYPGHIAKAERQLQDYLNMVDVVVEVRDCRIPAATTHQLVPSWVGKR 654
            T + AG  D  D PS+D    A    +GQ  INWYPGH+AKAERQLQ+++ +VDVVVE+RD RIP +T+H  V  WVG+R
Sbjct:   75 TRLHAGVSDLIDLPSLDGLSPADQLGRGQR-INWYPGHVAKAERQLQEFIKLVDVVVELRDSRIPLSTSHPKVDEWVGER 153
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BLAST of mRNA_Ecto-sp13_S_contig19053.6060.1 vs. uniprot
Match: A0A835ZND5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZND5_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.360e-16
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:  505 VINWYPGHIAKAERQLQDYLNMVDVVVEVRDCRIPAATTHQLVPSWVGKR 654
            +INWYPGHIAKAER L++YL +VDVVVEVRD RIP +TTH LVP WVG R
Sbjct:   85 LINWYPGHIAKAERTLEEYLKLVDVVVEVRDARIPISTTHPLVPRWVGGR 134
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BLAST of mRNA_Ecto-sp13_S_contig19053.6060.1 vs. uniprot
Match: A0A7S0T146_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0T146_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 8.740e-16
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:  463 DPFDEAKMNAQGQHVINWYPGHIAKAERQLQDYLNMVDVVVEVRDCRIPAATTHQLVPSWVGKR 654
            D  D+ K+     + I+WYPGHIAKAER+L  YL+ VDVV+EVRD RIP ATTH  VP WV K+
Sbjct:   51 DDIDKPKLT----NAISWYPGHIAKAERELASYLSKVDVVIEVRDARIPLATTHPKVPEWVNKK 110
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BLAST of mRNA_Ecto-sp13_S_contig19053.6060.1 vs. uniprot
Match: A0A482SIN3_9ARCH (Ribosome biogenesis GTPase YlqF n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIN3_9ARCH)

HSP 1 Score: 84.0 bits (206), Expect = 2.050e-15
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:  496 GQHVINWYPGHIAKAERQLQDYLNMVDVVVEVRDCRIPAATTHQLVPSWVGKR 654
            G+++I+WYPGHIAKAER+L +YL  VDVV+EV D RIP ATTH +VP WVG +
Sbjct:   10 GRNLISWYPGHIAKAERELAEYLKKVDVVIEVIDARIPFATTHPIVPQWVGSK 62
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BLAST of mRNA_Ecto-sp13_S_contig19053.6060.1 vs. uniprot
Match: A0A7S0BP04_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BP04_9RHOD)

HSP 1 Score: 80.9 bits (198), Expect = 3.570e-15
Identity = 32/50 (64.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:  505 VINWYPGHIAKAERQLQDYLNMVDVVVEVRDCRIPAATTHQLVPSWVGKR 654
            +INWYPGHIAKAE++L++ L++VDVV+E+RDCRIP +T H LV  WVG +
Sbjct:   60 LINWYPGHIAKAEKKLKEMLSVVDVVIEMRDCRIPRSTAHPLVEKWVGNK 109
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BLAST of mRNA_Ecto-sp13_S_contig19053.6060.1 vs. uniprot
Match: A0A7S2RRC8_9STRA (Hypothetical protein n=3 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RRC8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.750e-15
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:  415 TVMAAGWRDKEDGPSIDP-FDEAKMNA-QGQHVINWYPGHIAKAERQLQDYLNMVDVVVEVRDCRIPAATTHQLVPSWVG 648
            +  + G+R+     +++P +DEA+M   + + VI WYPGH+AKAE+QL D L  VDVVVE+RD RIP AT H LV  WVG
Sbjct:   29 SAHSGGYREHCSLRAVEPGWDEAEMGGVESKAVIQWYPGHVAKAEKQLVDCLQRVDVVVELRDARIPEATAHPLVDGWVG 108
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BLAST of mRNA_Ecto-sp13_S_contig19053.6060.1 vs. uniprot
Match: A0A0G4ERF4_VITBC (G domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ERF4_VITBC)

HSP 1 Score: 83.6 bits (205), Expect = 4.650e-15
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:  508 INWYPGHIAKAERQLQDYLNMVDVVVEVRDCRIPAATTHQLVPSWVGKR 654
            INWYPGHIAKA+RQL +Y+ +VDVV+EVRD RIP AT H +VP WVG R
Sbjct:  116 INWYPGHIAKAQRQLLEYIRLVDVVIEVRDARIPLATGHPMVPLWVGNR 164
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BLAST of mRNA_Ecto-sp13_S_contig19053.6060.1 vs. uniprot
Match: A0A2V3IVH6_9FLOR (Mitochondrial GTPase 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVH6_9FLOR)

HSP 1 Score: 80.9 bits (198), Expect = 1.920e-14
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:  466 PFDEAKMNAQG--QHVINWYPGHIAKAERQLQDYLNMVDVVVEVRDCRIPAATTHQLVPSWVGKR 654
            P+ +  +++ G  + VI WYPGHIAKAER L++ +  VDVV+EVRDCR+P AT H  VP+W+G +
Sbjct:   28 PYAKGALSSVGSMKPVIQWYPGHIAKAERALKESIKAVDVVIEVRDCRVPLATAHPEVPNWIGNK 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19053.6060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Q7_ECTSI2.330e-5396.67PYlqF, plastid YlqF/RbgA-like GTPase n=2 Tax=Ectoc... [more]
A0A4D9DA39_9STRA1.070e-1857.65G domain-containing protein n=2 Tax=Monodopsidacea... [more]
A0A0G4F733_9ALVE8.790e-1855.00G domain-containing protein n=1 Tax=Chromera velia... [more]
A0A835ZND5_9STRA1.360e-1676.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S0T146_9STRA8.740e-1659.38Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A482SIN3_9ARCH2.050e-1566.04Ribosome biogenesis GTPase YlqF n=1 Tax=archaeon T... [more]
A0A7S0BP04_9RHOD3.570e-1564.00Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S2RRC8_9STRA3.750e-1551.25Hypothetical protein n=3 Tax=Rhizochromulina marin... [more]
A0A0G4ERF4_VITBC4.650e-1571.43G domain-containing protein n=1 Tax=Vitrella brass... [more]
A0A2V3IVH6_9FLOR1.920e-1452.31Mitochondrial GTPase 1 n=1 Tax=Gracilariopsis chor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19053contigEcto-sp13_S_contig19053:102..1361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score188.7
Seed ortholog evalue2.8e-45
Seed eggNOG ortholog2880.D7G6Q7
Model size657
KEGG koko:K19828
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022613,GO:0042254,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0071840
Exons2
EggNOG free text desc.guanine nucleotide-binding protein-like
EggNOG OGsCOG1161@1,KOG2484@2759
Cds size657
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462971.892355-CDS-Ecto-sp13_S_contig19053:101..2431681462971.892355-CDS-Ecto-sp13_S_contig19053:101..243Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19053 102..243 -
1681462971.9029028-CDS-Ecto-sp13_S_contig19053:846..13611681462971.9029028-CDS-Ecto-sp13_S_contig19053:846..1361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19053 847..1361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19053.6060.1prot_Ecto-sp13_S_contig19053.6060.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19053 102..1361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19053.6060.1

>prot_Ecto-sp13_S_contig19053.6060.1 ID=prot_Ecto-sp13_S_contig19053.6060.1|Name=mRNA_Ecto-sp13_S_contig19053.6060.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=219bp
MFVAFVENVNSGANMMRWRRRTDPKNAIIGGSSSNIVLQPRQGGRRPNRR
RPRQSGAVAAALASSALACLVVLFLPHGTMPSASAFTASSVLLSPSTALA
GSAASRAVGGASGLVRRAQQQQQQHGRRRVTGRGGLSTTVMAAGWRDKED
GPSIDPFDEAKMNAQGQHVINWYPGHIAKAERQLQDYLNMVDVVVEVRDC
RIPAATTHQLVPSWVGKR*
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mRNA from alignment at Ecto-sp13_S_contig19053:102..1361-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19053.6060.1 ID=mRNA_Ecto-sp13_S_contig19053.6060.1|Name=mRNA_Ecto-sp13_S_contig19053.6060.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1260bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19053:102..1361- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGTTGCCTTTGTGGAAAACGTCAACAGTGGAGCCAACATGATGCG
GTGGCGAAGACGAACAGATCCCAAGAACGCCATCATAGGCGGCAGCAGCA
GCAACATCGTACTGCAACCACGGCAGGGGGGTCGACGACCTAACAGGCGG
CGGCCCAGACAATCCGGGGCTGTGGCAGCAGCGCTCGCCTCTTCCGCGCT
TGCCTGCCTCGTCGTCCTCTTCCTCCCCCATGGAACCATGCCATCGGCCT
CGGCCTTCACCGCTTCTTCTGTGCTGTTGTCGCCATCGACAGCCCTCGCA
GGTAGTGCTGCATCGCGTGCCGTCGGCGGAGCAAGTGGCCTTGTAAGACG
AGCGCAACAGCAGCAGCAGCAGCACGGGCGGAGAAGGGTGACGGGCAGAG
GCGGGTTGTCGACGACAGTCATGGCAGCGGGCTGGCGGGACAAAGAGGAC
GGCCCTTCAATCGACCCCTTCGACGAGGCGAAAATGAACGCGCAAGGACA
GCATGTTATCAACTGGTGGGTGACCGGGTGACCGCCCCAATTGTAGACGC
GGCCGAGACTGTCATGATTTCATGACAGGCCGGGGGTTGATTGACAGGCC
TATGACAGGCTCCGGACGTGCAGCCCGCGAGTGTGTTGAGACACTGTGTA
TCAAGCGAAGGGCGTGCAGCCCGCGAGGTTTTTCTGTGTTGAGTTTTCCA
GCGTGTGCGTTGCGCGGTGCCTTGTTTTGCTATGAAGCCTGTCCCTCTGT
GCAAACTCGTCAACATGTGTCAGGACGCGAGGACTGAACATTTCTCACGT
TTGTTTCAAACAACACCGGGGCGCTGCGTGGACATTCATTGAACATCTGT
TCTTCAGGTACCGGTCCACCCCTCGTCCATGTAGCAGATATGTAGCCTAC
GAACAAAGCTATCGCATGCCATCTATCGCACCAGCACCCTGGCCGGTACC
CTCTACTCCTACAGTTCCTGCTTAGGCTCGATGTAGCTGCAATGCCGGCA
CAACATGAAGAGCGTTCTGGTCGTCGGAGATCGCCTATAATAGTGTAGCG
GCGTCGTGTCTGCTTGCCTACTCTCACCTGCCTACTACTCATCGCCGTGC
GAAAACACACCTCCACAGGTATCCGGGGCACATCGCCAAGGCGGAGCGGC
AGCTCCAGGACTATCTCAACATGGTGGACGTAGTGGTCGAGGTCCGCGAC
TGCCGCATTCCCGCCGCCACGACACACCAGCTGGTTCCCTCGTGGGTTGG
CAAGAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19053:102..1361-

>mRNA_Ecto-sp13_S_contig19053.6060.1 ID=mRNA_Ecto-sp13_S_contig19053.6060.1|Name=mRNA_Ecto-sp13_S_contig19053.6060.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=657bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19053:102..1361- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGTTGCCTTTGTGGAAAACGTCAACAGTGGAGCCAACATGATGCG
GTGGCGAAGACGAACAGATCCCAAGAACGCCATCATAGGCGGCAGCAGCA
GCAACATCGTACTGCAACCACGGCAGGGGGGTCGACGACCTAACAGGCGG
CGGCCCAGACAATCCGGGGCTGTGGCAGCAGCGCTCGCCTCTTCCGCGCT
TGCCTGCCTCGTCGTCCTCTTCCTCCCCCATGGAACCATGCCATCGGCCT
CGGCCTTCACCGCTTCTTCTGTGCTGTTGTCGCCATCGACAGCCCTCGCA
GGTAGTGCTGCATCGCGTGCCGTCGGCGGAGCAAGTGGCCTTGTAAGACG
AGCGCAACAGCAGCAGCAGCAGCACGGGCGGAGAAGGGTGACGGGCAGAG
GCGGGTTGTCGACGACAGTCATGGCAGCGGGCTGGCGGGACAAAGAGGAC
GGCCCTTCAATCGACCCCTTCGACGAGGCGAAAATGAACGCGCAAGGACA
GCATGTTATCAACTGGTATCCGGGGCACATCGCCAAGGCGGAGCGGCAGC
TCCAGGACTATCTCAACATGGTGGACGTAGTGGTCGAGGTCCGCGACTGC
CGCATTCCCGCCGCCACGACACACCAGCTGGTTCCCTCGTGGGTTGGCAA
GAGGTGA
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