mRNA_Ecto-sp13_S_contig19043.6054.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19043.6054.1
Unique NamemRNA_Ecto-sp13_S_contig19043.6054.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19043.6054.1 vs. uniprot
Match: A0A6H5LJ83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ83_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 5.170e-119
Identity = 190/207 (91.79%), Postives = 194/207 (93.72%), Query Frame = 1 
Query:   37 MLRRLTTKGVVEALAFTHPGCASRRIFFPGAVNAAQWQRQPEQQQWISSSTRGLKSSPAXXXXXXXXXXXXXXPSGEKRKQDWAPGTPPAGRDQTIGEAFAAMQYHARGTRKVKASVLNRILERVTSEDDLKYACLGLKIFKTQGIDLEKKTATLFIKACCKAGSPQMAVDVLGEAAKYGLDGEGVVCAHRFNYLLSQLYIAGDSES 657
            MLRRLTTKGV+EALA THPGCASRRIFFPGA NA QWQRQPEQQQWISSSTRGL        XXXXXXXXXXXPSGEKRKQDWAPGTPPAGRDQTIGEAFAAMQYHARGTRKVKASVLNRILERVTS +DLKYACLGLKIFKTQGIDLEKKTATLF+KACCKAGSPQMAVDVLGEAAKYGLDGEGVV AHRFNYLLSQLYIAGDSE+
Sbjct:    1 MLRRLTTKGVLEALASTHPGCASRRIFFPGAANATQWQRQPEQQQWISSSTRGLXXX-----XXXXXXXXXXXPSGEKRKQDWAPGTPPAGRDQTIGEAFAAMQYHARGTRKVKASVLNRILERVTSAEDLKYACLGLKIFKTQGIDLEKKTATLFVKACCKAGSPQMAVDVLGEAAKYGLDGEGVVSAHRFNYLLSQLYIAGDSET 202
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BLAST of mRNA_Ecto-sp13_S_contig19043.6054.1 vs. uniprot
Match: D7FS35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS35_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 2.420e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:  538 MAVDVLGEAAKYGLDGEGVVCAHRFNYLLSQLYIAGDSES 657
            MAVDVLGEAAKYGLDGEGVV AHRFNYLLSQLYIAGDSE+
Sbjct:    1 MAVDVLGEAAKYGLDGEGVVSAHRFNYLLSQLYIAGDSET 40
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19043.6054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LJ83_9PHAE5.170e-11991.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS35_ECTSI2.420e-1495.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19043contigEcto-sp13_S_contig19043:432..3052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size657
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_004500.1
Cds size657
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462971.380336-CDS-Ecto-sp13_S_contig19043:431..5581681462971.380336-CDS-Ecto-sp13_S_contig19043:431..558Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19043 432..558 +
1681462971.3917086-CDS-Ecto-sp13_S_contig19043:1389..16341681462971.3917086-CDS-Ecto-sp13_S_contig19043:1389..1634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19043 1390..1634 +
1681462971.3997924-CDS-Ecto-sp13_S_contig19043:2367..25051681462971.3997924-CDS-Ecto-sp13_S_contig19043:2367..2505Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19043 2368..2505 +
1681462971.4077811-CDS-Ecto-sp13_S_contig19043:2905..30521681462971.4077811-CDS-Ecto-sp13_S_contig19043:2905..3052Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19043 2906..3052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19043.6054.1prot_Ecto-sp13_S_contig19043.6054.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19043 432..3052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19043.6054.1

>prot_Ecto-sp13_S_contig19043.6054.1 ID=prot_Ecto-sp13_S_contig19043.6054.1|Name=mRNA_Ecto-sp13_S_contig19043.6054.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=219bp
LCEGLALDKVFAMLRRLTTKGVVEALAFTHPGCASRRIFFPGAVNAAQWQ
RQPEQQQWISSSTRGLKSSPAPAAAAAAAAAAAAAPSGEKRKQDWAPGTP
PAGRDQTIGEAFAAMQYHARGTRKVKASVLNRILERVTSEDDLKYACLGL
KIFKTQGIDLEKKTATLFIKACCKAGSPQMAVDVLGEAAKYGLDGEGVVC
AHRFNYLLSQLYIAGDSES
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mRNA from alignment at Ecto-sp13_S_contig19043:432..3052+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19043.6054.1 ID=mRNA_Ecto-sp13_S_contig19043.6054.1|Name=mRNA_Ecto-sp13_S_contig19043.6054.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19043:432..3052+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTGCGAAGGTCTCGCGTTGGACAAGGTTTTCGCTATGCTTCGTCGGTT
GACAACCAAGGGTGTTGTAGAGGCGCTTGCGTTCACGCACCCTGGTTGCG
CCTCGCGACGTATTTTTTTTCCCGGCGGTGAGTCATGAAAAATACCGTAC
GCGAACAGCATGCGGTCCGTATCATCTGTACTACTTGATCATTGAGCAAC
ACACACCCATCTGCGTAAGGTGGTCACTGCAGCTGTTGCTAGGCAGTGGG
CGAGTGACTAGCACCCATCGATTAGAATCGTCTTGTATGTCATATCCGCG
CCGACCATGACATCGCTGCTGCTGCTGTCAGCAGAACTCCGTGTTGCAAC
GCCTCTTTCACAAAGCAGTACTCCGTACATCAGTCATGCTCCGCAACTCA
CGTAGCACTGCCAGTCCAGAGTCCAGAGTGTAGCGCTGATAAATAGATCT
ACAATCATACGTGTGTATGCACGGCTGCTGCAGATGTACCAACGGGCGAA
GGTATTTGCGTGAGGCTGCTGCCGTTTGGTGGGTGCAGACTCGACGTGCA
ACATTCTCGACAATGATAAAAAGTCTACAATGAACTTTTAAGCCGAAGTA
TTGGCTGCATCTGAGATGCTGTGTAGATCGCTGGATCGCTTCCGCTGGTC
TACCTCGAGAATAGAGCCGGTATTGGCCGCAGGGGTCCAACACATGATGC
AACACTACGACCTTCTGCCGGAAAGAGACAGAACCAGAAAGAAGAATAAG
GAACCTCGAGCAAGAGAATAGTGATGCATTGGTCTCCCGTTGCCCATGTG
CTAAAGGCGTACGTCCGCTCCACATTACGCGCACATGTTAAGATGTTGTG
GCCAGCTACGCATACATGGAACCAGTTCAAACCCAGCTTCACGCCATTTG
AAATCCCCCCACCCCTTTACCCTTTCATTGTTAACATCGAATCGCTTCAA
CTCGACAGCCGTGAATGCCGCTCAATGGCAGCGACAGCCGGAGCAGCAGC
AGTGGATATCATCATCCACGAGGGGACTCAAAAGCTCACCCGCACCCGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCTTCAGGGGAGAA
AAGAAAGCAGGACTGGGCCCCTGGCACGCCGCCAGCGGGCAGGGACCAAA
CCATCGGGGAGGCCTTCGCTGCTATGCAGTATCATGCGAGGGGGACAAGA
AAGGTATTGTTACAAAGCTTATTTTCTTGAGTTTTCCCGCGGGAAAACAC
AACTAAATATTGTCTCTTGGCCCGATAAGAGTCAGGGATAGACGAGCAAT
GGGTTCGAAGCGTTGCGCGACGACCAACCTGTATTTTTACGGTTCCCGAC
CAGCATATAAAGCGGTATCTGCCCTTTGGGTTAACAGGTTCGACAAGCCT
GTTCGGTGGCCATTTGTTTTCAATGTTTGTCTGTCTCCGACGGGGCGGGG
GGGGGAGGGGATGGCGGGCGTACCGGTGTCCTCTTCCTCGTCGGCGACGG
CATACGGAACGGAAAGGGCGTTGTGGCTCATTTTTTAGGAAATCTACAAA
CCATCACAGAGGACTACCCGTTCGAGATATCTAACCACAGTCGAAGGGAA
TGGGTTGAAGGCTTGAGCGGGAGAAATAACCGGCTGGATACGTTTTTCGC
CCGCTTGGTGTCATGGCTTGATAGTGTTGCCAATCGTCTGTCCGTGCGAA
ATACTCATCCATGTAGATTGCCAGCATCATGAATATGTCGCTCAGCTTGC
ATTAAACACAAAAACGCACCAACACTATCCTTGGAGTCGAGGCAGTCCAC
GTCTGAAAGTGGCCGAGCCGACATTGCACATACCCATATTGACGACGCGA
GCGACAGAAATCGGTGTTGCCTCTTTCATGCTCTACTGCGGCTACGTAAC
TTTTCTTGTTTCTGTCCCCGGCTCGGGACGACAAAGGTGAAGGCGAGCGT
TCTGAACCGTATCCTGGAGCGAGTGACGTCCGAAGATGATCTCAAGTACG
CGTGCCTGGGGCTCAAGATCTTCAAGACGCAGGGCATCGACCTCGAAAAA
AAGACCGCCACTCTCTTCATCAAGGTGATCTACTATGTTACACGTATCTA
CTACGTAGCAAGTGGGAGAGATCTTTGCCATCTGGCACCGAGTGCACACC
TTGAGATGTGCTGGTCGTCGTGGGGAGGGCTAAATCGTTTCGTGGCTCAA
GGACAAGCTGTCCAGTCTACCGTACGAACGGTTTGGTGATGTTATGATAT
TCGCCTCGTGGAAACCCTCCTCCTCTATCAACCTCGAGGACGCGTGGTCA
ATAGTCCAAACAACTAAATAGGTCATGGAAAACATTAGTACACCCCTCCA
TCCTCTAACGTTTGTTAATAGATTTTTCGGGCGAAATATTCCTCCTTTTT
TTGGCGCGTTTTGATGTTGGGACCACTGGCTATCACGGTTGCCCACCCCC
CATTTCACGGCCTCCGTTCGCCAGGCTTGTTGCAAGGCGGGTTCACCCCA
GATGGCAGTGGACGTCCTGGGGGAGGCCGCCAAATACGGGCTAGACGGAG
AAGGTGTGGTCTGCGCTCATCGCTTCAACTATCTCTTGAGCCAGCTCTAC
ATTGCCGGAGACTCGGAAAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19043:432..3052+

>mRNA_Ecto-sp13_S_contig19043.6054.1 ID=mRNA_Ecto-sp13_S_contig19043.6054.1|Name=mRNA_Ecto-sp13_S_contig19043.6054.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=657bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19043:432..3052+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTGCGAAGGTCTCGCGTTGGACAAGGTTTTCGCTATGCTTCGTCGGTT
GACAACCAAGGGTGTTGTAGAGGCGCTTGCGTTCACGCACCCTGGTTGCG
CCTCGCGACGTATTTTTTTTCCCGGCGCCGTGAATGCCGCTCAATGGCAG
CGACAGCCGGAGCAGCAGCAGTGGATATCATCATCCACGAGGGGACTCAA
AAGCTCACCCGCACCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCACCTTCAGGGGAGAAAAGAAAGCAGGACTGGGCCCCTGGCACGCCG
CCAGCGGGCAGGGACCAAACCATCGGGGAGGCCTTCGCTGCTATGCAGTA
TCATGCGAGGGGGACAAGAAAGGTGAAGGCGAGCGTTCTGAACCGTATCC
TGGAGCGAGTGACGTCCGAAGATGATCTCAAGTACGCGTGCCTGGGGCTC
AAGATCTTCAAGACGCAGGGCATCGACCTCGAAAAAAAGACCGCCACTCT
CTTCATCAAGGCTTGTTGCAAGGCGGGTTCACCCCAGATGGCAGTGGACG
TCCTGGGGGAGGCCGCCAAATACGGGCTAGACGGAGAAGGTGTGGTCTGC
GCTCATCGCTTCAACTATCTCTTGAGCCAGCTCTACATTGCCGGAGACTC
GGAAAGT
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