mRNA_Ecto-sp13_S_contig19040.6053.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19040.6053.1
Unique NamemRNA_Ecto-sp13_S_contig19040.6053.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19040.6053.1 vs. uniprot
Match: D8LRN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN8_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 4.250e-5
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = -1 
Query:  463 ITVAPPRKTSKKRGIISKSNHVTHTH 540
            ITVAPPRKTSKKRGI SKSNHVTHTH
Sbjct:  484 ITVAPPRKTSKKRGIFSKSNHVTHTH 509
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BLAST of mRNA_Ecto-sp13_S_contig19040.6053.1 vs. uniprot
Match: D8LRN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN5_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 4.300e-5
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = -1 
Query:  463 ITVAPPRKTSKKRGIISKSNHVTHTH 540
            ITVAPPRKTSKKRGI SKSNHVTHTH
Sbjct:  526 ITVAPPRKTSKKRGIFSKSNHVTHTH 551
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BLAST of mRNA_Ecto-sp13_S_contig19040.6053.1 vs. uniprot
Match: A0A6H5KAH2_9PHAE (DUF4139 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAH2_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.610e-5
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = -1 
Query:  454 ITVAPPRKTSKKRGIISKSNHVTHTHRYQ 540
            ITV P RKTSKKRGI SKSNHVTHTHRY+
Sbjct:  362 ITVGPLRKTSKKRGIFSKSNHVTHTHRYR 390
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BLAST of mRNA_Ecto-sp13_S_contig19040.6053.1 vs. uniprot
Match: D8LRN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN6_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 7.710e-5
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = -1 
Query:  463 ITVAPPRKTSKKRGIISKSNHVTHTH 540
            I VAPPRKTSKKRGIISKSNHVTHTH
Sbjct:  452 IIVAPPRKTSKKRGIISKSNHVTHTH 477
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BLAST of mRNA_Ecto-sp13_S_contig19040.6053.1 vs. uniprot
Match: D8LRN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN7_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 7.820e-5
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = -1 
Query:    1 STLISNNKKVPVTCVVVDAMPRSTDD 78
            STLISN KKVPVTCVVVDAMPRSTDD
Sbjct:  521 STLISNTKKVPVTCVVVDAMPRSTDD 546
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19040.6053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LRN8_ECTSI4.250e-596.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN5_ECTSI4.300e-596.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAH2_9PHAE7.610e-586.21DUF4139 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LRN6_ECTSI7.710e-596.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN7_ECTSI7.820e-596.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19040contigEcto-sp13_S_contig19040:2495..3034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size540
Hectar predicted targeting categoryother localisation
Exons1
Cds size540
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462971.3551893-CDS-Ecto-sp13_S_contig19040:2494..30341681462971.3551893-CDS-Ecto-sp13_S_contig19040:2494..3034Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19040 2495..3034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19040.6053.1prot_Ecto-sp13_S_contig19040.6053.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19040 2495..3034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19040.6053.1

>prot_Ecto-sp13_S_contig19040.6053.1 ID=prot_Ecto-sp13_S_contig19040.6053.1|Name=mRNA_Ecto-sp13_S_contig19040.6053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=180bp
IVGGAWHSVDDDTRHRHLLVVGDQRAVIETCAESAAPVYGKAALKNYNLE
AAIDHVCHVELLSRSLDNRVGEFLLYSAQWVTDRKLRFDWYILSREVALL
LDSAAVTPWCSGIRTQDSGRAPTSSGMRERLTEPQISIVSATPIVSETTL
PLVPVGVCDVVGLGDDAALLAGLAWRCHRD
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mRNA from alignment at Ecto-sp13_S_contig19040:2495..3034+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19040.6053.1 ID=mRNA_Ecto-sp13_S_contig19040.6053.1|Name=mRNA_Ecto-sp13_S_contig19040.6053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=540bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19040:2495..3034+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGTCGGTGGAGCGTGGCATAGCGTCGACGACGACACACGTCACCGGCA
CCTTCTTGTTGTTGGAGATCAACGTGCTGTCATTGAAACGTGCGCGGAAT
CAGCAGCGCCAGTGTACGGGAAGGCCGCATTGAAAAATTACAATTTGGAG
GCAGCTATCGACCATGTTTGCCATGTTGAGTTATTGTCGAGATCCCTCGA
TAATAGGGTCGGCGAGTTCCTGCTGTATTCCGCGCAGTGGGTGACAGACC
GCAAACTACGTTTTGATTGGTACATACTCTCGCGGGAGGTAGCACTTCTT
CTTGACAGTGCCGCGGTAACTCCATGGTGCAGTGGGATCCGTACTCAAGA
TAGCGGGCGGGCACCCACCAGTTCGGGTATGCGCGAGAGACTCACGGAGC
CACAAATATCCATTGTTTCGGCAACGCCGATAGTTTCTGAAACAACGCTG
CCTTTGGTACCTGTGGGTGTGTGTGACGTGGTTGGACTTGGAGATGATGC
CGCGCTTCTTGCTGGTCTTGCGTGGAGGTGCCACCGTGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19040:2495..3034+

>mRNA_Ecto-sp13_S_contig19040.6053.1 ID=mRNA_Ecto-sp13_S_contig19040.6053.1|Name=mRNA_Ecto-sp13_S_contig19040.6053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=540bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19040:2495..3034+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGTCGGTGGAGCGTGGCATAGCGTCGACGACGACACACGTCACCGGCA
CCTTCTTGTTGTTGGAGATCAACGTGCTGTCATTGAAACGTGCGCGGAAT
CAGCAGCGCCAGTGTACGGGAAGGCCGCATTGAAAAATTACAATTTGGAG
GCAGCTATCGACCATGTTTGCCATGTTGAGTTATTGTCGAGATCCCTCGA
TAATAGGGTCGGCGAGTTCCTGCTGTATTCCGCGCAGTGGGTGACAGACC
GCAAACTACGTTTTGATTGGTACATACTCTCGCGGGAGGTAGCACTTCTT
CTTGACAGTGCCGCGGTAACTCCATGGTGCAGTGGGATCCGTACTCAAGA
TAGCGGGCGGGCACCCACCAGTTCGGGTATGCGCGAGAGACTCACGGAGC
CACAAATATCCATTGTTTCGGCAACGCCGATAGTTTCTGAAACAACGCTG
CCTTTGGTACCTGTGGGTGTGTGTGACGTGGTTGGACTTGGAGATGATGC
CGCGCTTCTTGCTGGTCTTGCGTGGAGGTGCCACCGTGAT
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