mRNA_Ecto-sp13_S_contig19040.6051.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19040.6051.1
Unique NamemRNA_Ecto-sp13_S_contig19040.6051.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19040.6051.1 vs. uniprot
Match: A0A6H5L217_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L217_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.890e-30
Identity = 63/83 (75.90%), Postives = 66/83 (79.52%), Query Frame = -2 
Query:    3 HEQDIGTGPT--FTIIANGRFYVGWTNCPLRASNATRFSNREQQQPQQQVNTTAEATTQAWLTHAREVDLTL*SFDIAIGDPE 245
            H +D GT  T  + +         WTNCPLRASNATRFSNREQQQPQQQVNTTAEATTQAWLTHAREVDLTL SFDIAIGDPE
Sbjct:   25 HSKDAGTTGTAYYAVTVTNSTEHTWTNCPLRASNATRFSNREQQQPQQQVNTTAEATTQAWLTHAREVDLTLESFDIAIGDPE 107
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BLAST of mRNA_Ecto-sp13_S_contig19040.6051.1 vs. uniprot
Match: A0A6H5JUY1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY1_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 5.900e-29
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = -2 
Query:    3 WTNCPLRASNATRFSNREQQQPQQQVNTTAEATTQAWLTHAREVDLTL*SFDIAIGDPE 179
            WTNCPLRASNATRFSNREQQQPQQQVNTTAEATTQAWLTHAREVDLTL SFDIAIGDPE
Sbjct:  429 WTNCPLRASNATRFSNREQQQPQQQVNTTAEATTQAWLTHAREVDLTLESFDIAIGDPE 487
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BLAST of mRNA_Ecto-sp13_S_contig19040.6051.1 vs. uniprot
Match: A0A6H5K4R6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R6_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 7.430e-26
Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = -2 
Query:    3 WTNCPLRASNATRFSNREQQQPQQQVNTTAEATTQAWLTHAREVDLTL*SFDIAIGDPE 179
            WTNCPLRASNAT  S+REQQ+PQQQVNTTAEATTQAWLTHAREVDLTL SFDIAIGDPE
Sbjct:  283 WTNCPLRASNATWLSSREQQRPQQQVNTTAEATTQAWLTHAREVDLTLESFDIAIGDPE 341
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BLAST of mRNA_Ecto-sp13_S_contig19040.6051.1 vs. uniprot
Match: A0A6H5KTJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ8_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.230e-24
Identity = 53/59 (89.83%), Postives = 54/59 (91.53%), Query Frame = -2 
Query:    3 WTNCPLRASNATRFSNREQQQPQQQVNTTAEATTQAWLTHAREVDLTL*SFDIAIGDPE 179
            WTNCPLR SNATRFSNRE Q PQQQVNTTAEATTQAWLTHAR VDLTL SFDIA+GDPE
Sbjct:  269 WTNCPLRTSNATRFSNREHQ-PQQQVNTTAEATTQAWLTHARAVDLTLESFDIAVGDPE 326
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BLAST of mRNA_Ecto-sp13_S_contig19040.6051.1 vs. uniprot
Match: A0A6H5LFQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFQ8_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 3.100e-19
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = -2 
Query:   51 WTNCPLRASNATRFSNREQQQPQQQVNTTAEATTQAWLTHARE 179
            WTNCPLRASNATRFSNREQQQPQQQVNTTAEATTQAWLTHARE
Sbjct:  385 WTNCPLRASNATRFSNREQQQPQQQVNTTAEATTQAWLTHARE 427
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BLAST of mRNA_Ecto-sp13_S_contig19040.6051.1 vs. uniprot
Match: A0A6H5KGD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD6_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.060e-11
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = -2 
Query:    3 QVNTTAEATTQAWLTHAREVDLTL*SFDIAIGDPE 107
            +VNTTAEATTQAWLTHAREVDLTL SFDIAIGDPE
Sbjct:  268 EVNTTAEATTQAWLTHAREVDLTLESFDIAIGDPE 302
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19040.6051.1 vs. uniprot
Match: A0A6H5JV83_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV83_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 6.850e-10
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = -2 
Query:    3 NTTAEATTQAWLTHAREVDLTL*SFDIAIGDPE 101
            +TTAEATTQAWLTHAREVDLTL SFDIAIGDPE
Sbjct:   30 DTTAEATTQAWLTHAREVDLTLESFDIAIGDPE 62
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19040.6051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L217_9PHAE1.890e-3075.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JUY1_9PHAE5.900e-2998.31Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K4R6_9PHAE7.430e-2691.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTJ8_9PHAE1.230e-2489.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LFQ8_9PHAE3.100e-19100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGD6_9PHAE3.060e-1194.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV83_9PHAE6.850e-1093.94Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19040contigEcto-sp13_S_contig19040:147..994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size249
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size168
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462971.251096-UTR-Ecto-sp13_S_contig19040:146..1671681462971.251096-UTR-Ecto-sp13_S_contig19040:146..167Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19040 147..167 +
1681462971.2882507-UTR-Ecto-sp13_S_contig19040:934..9941681462971.2882507-UTR-Ecto-sp13_S_contig19040:934..994Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19040 935..994 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462971.2678864-CDS-Ecto-sp13_S_contig19040:167..3261681462971.2678864-CDS-Ecto-sp13_S_contig19040:167..326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19040 168..326 +
1681462971.2795115-CDS-Ecto-sp13_S_contig19040:925..9341681462971.2795115-CDS-Ecto-sp13_S_contig19040:925..934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19040 926..934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19040.6051.1prot_Ecto-sp13_S_contig19040.6051.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19040 168..934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19040.6051.1

>prot_Ecto-sp13_S_contig19040.6051.1 ID=prot_Ecto-sp13_S_contig19040.6051.1|Name=mRNA_Ecto-sp13_S_contig19040.6051.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
MSNDYSVRSTSRACVSHACVVASAVVLTCCCGCCCSRFENRVALEARSGQ
FVQPT*
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mRNA from alignment at Ecto-sp13_S_contig19040:147..994+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19040.6051.1 ID=mRNA_Ecto-sp13_S_contig19040.6051.1|Name=mRNA_Ecto-sp13_S_contig19040.6051.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=848bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19040:147..994+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCTCGGGATCGCCTATAGCGATGTCGAATGATTACAGCGTGAGGTCTAC
CTCGCGCGCGTGCGTGAGCCACGCCTGCGTCGTGGCTTCCGCGGTCGTGT
TGACCTGCTGCTGCGGTTGCTGTTGTTCACGGTTCGAAAACCGCGTGGCA
TTGGAGGCGCGAAGCGGGCAGTTCGTCCAGGTGTGGTCCGTAGAATTGTG
ACAGTAACTGCATAAGCCGTCCCTGTCGTACCCGCGTTTTTGTTGTGAGT
GGTTTGGCCGTCCAGAGGACCGGTTGTCGGAAGACGCACCTCCAGCTCCG
TTGCCAGAAGTTGCGCCGCCATGGTTCTGGTCGTTAGTGTTGTTCCCCCT
CGACGACCCGTTGTTACGGTTCGACGAGTTGTTCCAGCTGCCACGTCCTC
GTCCACCGCGCTGCGCGCGTCCACGGCCATGATGACCGCCGCCCTCACGG
AAAGAACGCGCTCCGCCGTGTGTGACGGTATTCAGCGCACGGCTGCTGCT
TCCGGACAAGTTCTTCGACGCAATTTTACCACGTGGCTGCAAAGCTACAT
CGGACACGGGCATTGACTTTTGTTGAGAAGCACGATGACCACTAGACTAC
TAGTCAGCGCTGACTAGTAGTCTAGTTGTCATCGTGCTTATCAACACTTA
GACACACAATATCCTCAATGAGGTCACTCAGAAGCCTCTGGAGAAGAGAA
AGCTTCGCGCGACCGCGCAGCAGAGGGCCATAAGCTATTTTCATCCCCTT
TTTGCCCCTCATCACGCAATTTCCGGCAGCCGACATAAAATCGACCGTTG
GCGATGATTGTGAACGTGGGACCGGTACCGATGTCTTGCTCATGTAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19040:147..994+

>mRNA_Ecto-sp13_S_contig19040.6051.1 ID=mRNA_Ecto-sp13_S_contig19040.6051.1|Name=mRNA_Ecto-sp13_S_contig19040.6051.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19040:147..994+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAATGATTACAGCGTGAGGTCTACCTCGCGCGCGTGCGTGAGCCA
CGCCTGCGTCGTGGCTTCCGCGGTCGTGTTGACCTGCTGCTGCGGTTGCT
GTTGTTCACGGTTCGAAAACCGCGTGGCATTGGAGGCGCGAAGCGGGCAG
TTCGTCCAGCCGACATAA
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