prot_Ecto-sp13_S_contig1904.6050.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1904.6050.1
Unique Nameprot_Ecto-sp13_S_contig1904.6050.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length437
Homology
BLAST of mRNA_Ecto-sp13_S_contig1904.6050.1 vs. uniprot
Match: D8LC33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC33_ECTSI)

HSP 1 Score: 650 bits (1677), Expect = 2.490e-232
Identity = 329/362 (90.88%), Postives = 337/362 (93.09%), Query Frame = 0
Query:   74 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKVCPCNHDSPARNRRLAEDVESPGKTEVAIRLPEGDGEGQEGGAGRGGEGGGVHPHHSLNMGVNDVATLVLEDNQGITYDFYTFQVVEFDADSGAMALDRWNLFNCGVFRYSCALENISKIEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGASKETTAHPRSPRPSNAAMSLSDTGGSSPSSDGDGIRAVSGTVGGAPVARGTARRAVGAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFA 435
            MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGK CPCNHDSPAR+RRLAEDVE PGKTEVA+ +PEGDGE             GVHPHHSLNMGVNDVATLVLEDNQGITYDFYTFQVVEFDADSGAMALDRWNLF+CGVFRYSCALENISK+EITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGAS+  TAHPRSPRP+NA M+ SD GGSSPSSDGDGI AVSGTVGGAPVAR  ARRA GAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFA
Sbjct:    1 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKACPCNHDSPARSRRLAEDVEPPGKTEVALSVPEGDGEXXXXXXXXXXXXXGVHPHHSLNMGVNDVATLVLEDNQGITYDFYTFQVVEFDADSGAMALDRWNLFHCGVFRYSCALENISKVEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGASQAATAHPRSPRPNNAGMNFSDPGGSSPSSDGDGISAVSGTVGGAPVARAAARRAAGAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFA 362          
BLAST of mRNA_Ecto-sp13_S_contig1904.6050.1 vs. uniprot
Match: A0A6H5JJL0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJL0_9PHAE)

HSP 1 Score: 397 bits (1021), Expect = 4.940e-130
Identity = 201/207 (97.10%), Postives = 204/207 (98.55%), Query Frame = 0
Query:  229 QVVEFDADSGAMALDRWNLFNCGVFRYSCALENISKIEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGASKETTAHPRSPRPSNAAMSLSDTGGSSPSSDGDGIRAVSGTVGGAPVARGTARRAVGAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFA 435
            +VVEFDADSGAMALDRWNLFNCGVFRYSCALENISKIEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGAS+ETTAHPRSPRPSNAAM+LSDT GSSPSSDGDGI  VSGTVGGAPVARGTARRAVGAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFA
Sbjct:  354 EVVEFDADSGAMALDRWNLFNCGVFRYSCALENISKIEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGASQETTAHPRSPRPSNAAMNLSDTDGSSPSSDGDGISGVSGTVGGAPVARGTARRAVGAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFA 560          
BLAST of mRNA_Ecto-sp13_S_contig1904.6050.1 vs. uniprot
Match: A0A6H5JRV5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV5_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 1.670e-65
Identity = 109/119 (91.60%), Postives = 111/119 (93.28%), Query Frame = 0
Query:   74 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKVCPCNHDSPARNRRLAEDVESPGKTEVAIRLPEGDGEGQEGGAGRGG 192
            MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGK CPCN DSPAR+RRLAED E  GKTEVAI LPEGDGEGQ+G AG GG
Sbjct:    1 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKACPCNRDSPARSRRLAEDFEPLGKTEVAISLPEGDGEGQKGEAGGGG 119          
BLAST of mRNA_Ecto-sp13_S_contig1904.6050.1 vs. uniprot
Match: A0A7S2Y0H0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0H0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 6.270e-16
Identity = 87/354 (24.58%), Postives = 128/354 (36.16%), Query Frame = 0
Query:   21 MEVLEKTKRKVVVRQRRHEVRRAVVGCFLLTLLFYLLDARHPKSSLYCTRHAIMPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKVCPCNHDSPARNRRLAEDVESPGKTEVAIRLPEGDGEGQEGGAGRGGEGGGVH---------PHHSLNMGVNDVATLVLEDNQGITYDFYTFQVVE-----------------------------------------------------------FDADSGAMALDRWNLFNCGVFRYSCALENISKIEITEGNVYMMSA---HAFEHLRQTKEFGLRVIFSVPLGASK 303
            M++LEK   +VV+     +++ + + C + T +F LLDA HPK+SL+C RH I+ D           ED DC L+VR TR+  D+      +YSFE+    +                                           S G +   ++                 EG   H           H      N + ++VLEDN+  TY FYTFQ +E                                                           FDA+SG   L+R NL +     Y+CALENIS ++I    V+  ++   H   HL + +EF LRV+   P+ A K
Sbjct:    1 MKLLEKQPHRVVLSHTNGKLKYSAILCVVFTFIFLLLDAEHPKASLFCVRHEILVDRPAA------YEDNDCELLVRETRSLWDVVRQNTQAYSFEVAGVNMQV-----------------------------------------SSGISNYIVKY----------------EGNATHVMSLYDVFLQRHHGRYKRNSMFSVVLEDNEDNTYIFYTFQDLETACRVYDHVLRYLLNAREQRDRLRLNLDYDDSYMDEAAVAVFAVLAVLLLWKHCKEVAVFDAESGVFRLERSNLVSRPQVLYTCALENISALQIAGDTVFTFTSSRRHTDNHLMERQEFSLRVLLCRPMTADK 291          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1904.6050.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LC33_ECTSI2.490e-23290.88RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJL0_9PHAE4.940e-13097.10RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JRV5_9PHAE1.670e-6591.60Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S2Y0H0_9STRA6.270e-1624.58Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 58..436
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..39
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 40..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1904contigEcto-sp13_S_contig1904:4860..14804 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1904.6050.1mRNA_Ecto-sp13_S_contig1904.6050.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1904 4860..14804 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1904.6050.1 ID=prot_Ecto-sp13_S_contig1904.6050.1|Name=mRNA_Ecto-sp13_S_contig1904.6050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=437bp
SSHSLARSPTLYQPAPQRFAMEVLEKTKRKVVVRQRRHEVRRAVVGCFLL
TLLFYLLDARHPKSSLYCTRHAIMPDNELEAAKGLHVEDIDCSLVVRPTR
TALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKVCPCN
HDSPARNRRLAEDVESPGKTEVAIRLPEGDGEGQEGGAGRGGEGGGVHPH
HSLNMGVNDVATLVLEDNQGITYDFYTFQVVEFDADSGAMALDRWNLFNC
GVFRYSCALENISKIEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLG
ASKETTAHPRSPRPSNAAMSLSDTGGSSPSSDGDGIRAVSGTVGGAPVAR
GTARRAVGAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTS
GELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFAK*
back to top