mRNA_Ecto-sp13_S_contig1904.6050.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1904.6050.1
Unique NamemRNA_Ecto-sp13_S_contig1904.6050.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1904.6050.1 vs. uniprot
Match: D8LC33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC33_ECTSI)

HSP 1 Score: 650 bits (1677), Expect = 2.490e-232
Identity = 329/362 (90.88%), Postives = 337/362 (93.09%), Query Frame = 1 
Query:  220 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKVCPCNHDSPARNRRLAEDVESPGKTEVAIRLPEGDGEGQEGGAGRGGEGGGVHPHHSLNMGVNDVATLVLEDNQGITYDFYTFQVVEFDADSGAMALDRWNLFNCGVFRYSCALENISKIEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGASKETTAHPRSPRPSNAAMSLSDTGGSSPSSDGDGIRAVSGTVGGAPVARGTARRAVGAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFA 1305
            MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGK CPCNHDSPAR+RRLAEDVE PGKTEVA+ +PEGDGE             GVHPHHSLNMGVNDVATLVLEDNQGITYDFYTFQVVEFDADSGAMALDRWNLF+CGVFRYSCALENISK+EITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGAS+  TAHPRSPRP+NA M+ SD GGSSPSSDGDGI AVSGTVGGAPVAR  ARRA GAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFA
Sbjct:    1 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKACPCNHDSPARSRRLAEDVEPPGKTEVALSVPEGDGEXXXXXXXXXXXXXGVHPHHSLNMGVNDVATLVLEDNQGITYDFYTFQVVEFDADSGAMALDRWNLFHCGVFRYSCALENISKVEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGASQAATAHPRSPRPNNAGMNFSDPGGSSPSSDGDGISAVSGTVGGAPVARAAARRAAGAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFA 362
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1904.6050.1 vs. uniprot
Match: A0A6H5JJL0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJL0_9PHAE)

HSP 1 Score: 397 bits (1021), Expect = 4.940e-130
Identity = 201/207 (97.10%), Postives = 204/207 (98.55%), Query Frame = 1 
Query:  685 QVVEFDADSGAMALDRWNLFNCGVFRYSCALENISKIEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGASKETTAHPRSPRPSNAAMSLSDTGGSSPSSDGDGIRAVSGTVGGAPVARGTARRAVGAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFA 1305
            +VVEFDADSGAMALDRWNLFNCGVFRYSCALENISKIEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGAS+ETTAHPRSPRPSNAAM+LSDT GSSPSSDGDGI  VSGTVGGAPVARGTARRAVGAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFA
Sbjct:  354 EVVEFDADSGAMALDRWNLFNCGVFRYSCALENISKIEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGASQETTAHPRSPRPSNAAMNLSDTDGSSPSSDGDGISGVSGTVGGAPVARGTARRAVGAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFA 560
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1904.6050.1 vs. uniprot
Match: A0A6H5JRV5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV5_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 1.670e-65
Identity = 109/119 (91.60%), Postives = 111/119 (93.28%), Query Frame = 1 
Query:  220 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKVCPCNHDSPARNRRLAEDVESPGKTEVAIRLPEGDGEGQEGGAGRGG 576
            MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGK CPCN DSPAR+RRLAED E  GKTEVAI LPEGDGEGQ+G AG GG
Sbjct:    1 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKACPCNRDSPARSRRLAEDFEPLGKTEVAISLPEGDGEGQKGEAGGGG 119
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1904.6050.1 vs. uniprot
Match: A0A7S2Y0H0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0H0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 6.270e-16
Identity = 87/354 (24.58%), Postives = 128/354 (36.16%), Query Frame = 1 
Query:   61 MEVLEKTKRKVVVRQRRHEVRRAVVGCFLLTLLFYLLDARHPKSSLYCTRHAIMPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKVCPCNHDSPARNRRLAEDVESPGKTEVAIRLPEGDGEGQEGGAGRGGEGGGVH---------PHHSLNMGVNDVATLVLEDNQGITYDFYTFQVVE-----------------------------------------------------------FDADSGAMALDRWNLFNCGVFRYSCALENISKIEITEGNVYMMSA---HAFEHLRQTKEFGLRVIFSVPLGASK 909
            M++LEK   +VV+     +++ + + C + T +F LLDA HPK+SL+C RH I+ D           ED DC L+VR TR+  D+      +YSFE+    +                                           S G +   ++                 EG   H           H      N + ++VLEDN+  TY FYTFQ +E                                                           FDA+SG   L+R NL +     Y+CALENIS ++I    V+  ++   H   HL + +EF LRV+   P+ A K
Sbjct:    1 MKLLEKQPHRVVLSHTNGKLKYSAILCVVFTFIFLLLDAEHPKASLFCVRHEILVDRPAA------YEDNDCELLVRETRSLWDVVRQNTQAYSFEVAGVNMQV-----------------------------------------SSGISNYIVKY----------------EGNATHVMSLYDVFLQRHHGRYKRNSMFSVVLEDNEDNTYIFYTFQDLETACRVYDHVLRYLLNAREQRDRLRLNLDYDDSYMDEAAVAVFAVLAVLLLWKHCKEVAVFDAESGVFRLERSNLVSRPQVLYTCALENISALQIAGDTVFTFTSSRRHTDNHLMERQEFSLRVLLCRPMTADK 291
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1904.6050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LC33_ECTSI2.490e-23290.88RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJL0_9PHAE4.940e-13097.10RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JRV5_9PHAE1.670e-6591.60Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S2Y0H0_9STRA6.270e-1624.58Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1904contigEcto-sp13_S_contig1904:4860..14804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1313
Hectar predicted targeting categorysignal anchor
Exons7
Cds size1311
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1904.6050.1prot_Ecto-sp13_S_contig1904.6050.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1904 4860..14804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462971.1729326-CDS-Ecto-sp13_S_contig1904:4859..49491681462971.1729326-CDS-Ecto-sp13_S_contig1904:4859..4949Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1904 4860..4949 +
1681462971.1842647-CDS-Ecto-sp13_S_contig1904:8905..90041681462971.1842647-CDS-Ecto-sp13_S_contig1904:8905..9004Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1904 8906..9004 +
1681462971.1926012-CDS-Ecto-sp13_S_contig1904:9988..101291681462971.1926012-CDS-Ecto-sp13_S_contig1904:9988..10129Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1904 9989..10129 +
1681462971.2016-CDS-Ecto-sp13_S_contig1904:10649..110061681462971.2016-CDS-Ecto-sp13_S_contig1904:10649..11006Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1904 10650..11006 +
1681462971.209852-CDS-Ecto-sp13_S_contig1904:12438..125581681462971.209852-CDS-Ecto-sp13_S_contig1904:12438..12558Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1904 12439..12558 +
1681462971.218054-CDS-Ecto-sp13_S_contig1904:13180..135541681462971.218054-CDS-Ecto-sp13_S_contig1904:13180..13554Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1904 13181..13554 +
1681462971.2262928-CDS-Ecto-sp13_S_contig1904:14674..148041681462971.2262928-CDS-Ecto-sp13_S_contig1904:14674..14804Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1904 14675..14804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1904.6050.1

>prot_Ecto-sp13_S_contig1904.6050.1 ID=prot_Ecto-sp13_S_contig1904.6050.1|Name=mRNA_Ecto-sp13_S_contig1904.6050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=437bp
SSHSLARSPTLYQPAPQRFAMEVLEKTKRKVVVRQRRHEVRRAVVGCFLL
TLLFYLLDARHPKSSLYCTRHAIMPDNELEAAKGLHVEDIDCSLVVRPTR
TALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKVCPCN
HDSPARNRRLAEDVESPGKTEVAIRLPEGDGEGQEGGAGRGGEGGGVHPH
HSLNMGVNDVATLVLEDNQGITYDFYTFQVVEFDADSGAMALDRWNLFNC
GVFRYSCALENISKIEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLG
ASKETTAHPRSPRPSNAAMSLSDTGGSSPSSDGDGIRAVSGTVGGAPVAR
GTARRAVGAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTS
GELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFAK*
back to top

mRNA from alignment at Ecto-sp13_S_contig1904:4860..14804+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1904.6050.1 ID=mRNA_Ecto-sp13_S_contig1904.6050.1|Name=mRNA_Ecto-sp13_S_contig1904.6050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=9945bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1904:4860..14804+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTCGCACTCGCTCGCTCGCTCCCCTACTCTCTACCAGCCCGCCCCTCA
ACGCTTTGCCATGGAAGTCCTGGAAAAGACAAAGCGTAAGGCAAGTGAGT
TGACCATGCTGATCTCGAACCATGGTGCTATGGATGTGTCAGCATCAGCA
GCAGGGCAGCGCTAAAATGTTGGGTTGGATTTTCGGGACCCATGTTCCCG
ACCTTCAGCAGACTCTTCGAAACGAGTTCCGAGTGCACTGCTGTAACAGG
GACACACCCCCACGGCGCTAGAAACACTAGTACAGCAGTACAAGCGTTAG
GTGCCTCCAAAGTTCCGTACAACAGTCTACTGCTGTATGCGGGTACAGCA
GTATACAGCAATTTGTAACGGGTGACTGCTGACCACTTTTCCTCTTGATT
TCGGCAGTAAATTTGCAGAAATTTTGCGCGCAATCGCAGGCGGTTCAGAG
ACCGAGGTTCCCAAGAGAGCAGGCAGGCTCCCCAAGTAGTGCAGCAGTAT
GGATACTATTACGATGTGCATGTGTACATGTGTACTTCAGCAGACAGCAG
TGTAGGCGGTAGCGGTTCCGCACCAGAAGTACGGGCAGATGTTAGAAGGC
TGGGCAGCTGAGACCGGCTTTTCATCTGCTCATGCGGAGACAAGAACAAA
AGCAACAACCATGTGGTGTGCAACATCATAACTAACAACTGCTGTTGTTT
TAGTTACATGGTACACGTCTCCACAGCAGCACAGTTTGACAGAACTGACT
TTGCCCCTCGCCTATGACGACCTATTTACTCATTTTATATCTACAGAGTG
TATGCGCGGTGTACTCAACCGTCCCCTGTATCTACAGCACAATCGGTTGA
TAACCGGATGAAAGCTTGACTCCAGTCCTGTTGGTATTCCGCGTTGCATG
ATCCACTCCCTAGCGCCAGGTTGTGGGTTCGATTTGTCTCCACGGAGGGG
TTTATTCCCGGGATTTGTTTCAAGCAATCTGTAAGTGGAAAACAATCTAT
AGGTCGTGAGTAAACACACTTCACCTCGGCTCCGTCAGCTGTCGACGAGG
GAAAAGAATGGCGGAACCCTTCTCGCGATGAAAACCAAGGCAAGCAGCGA
AGGGGAAACTTGAGACAACAAAACAGCAAGAAAATAACCTCCTGTGTGAC
CATCCTCTTGCCTGCGTGACGTTCCTCTTGTGCGACCCCGGCTGATACGT
CAGGTATATACTCCGAAAGATCTGTATACTGGCGCCAGAATAGATGGGAC
GAACACACACACACACACGCAGTTGAGCTGACACAGTTTGTGAACCTACG
GATTGCAGCAGTAGAGTGCCTGTCGAACAGCAATGCGTACCACACTGCCC
GGCGTCATGACTAAAATACCGGTGGACTCGCTCGGCACTGACAAACGTAC
AGTACATCAGTAGTGCCGGCAGCACGGGCTGTGCTGTAATACTTCCTGTT
TAGCTACGCTGGACCCCTCAGTAGTGCTGGTTCAGGCTACATGAGTTCAT
TTTCAGTTACCCACAAACACACGCGCGTCTAAACAGATGTACCCGTGCTG
CTACTGTACCCCTTACTGGACGTCATAGTCTTGCATGCGTACCATACCGT
GTGCGTACCATGTGCGCAGCTGGCGAATAGACAGACTTTGGGGGGATTTG
CGGGGCGAGGCGGGGAGTGCAATAGCAGAACATTTTTCTTCCGTGTGTCG
TATACCGCAGTCGTTGTTGTTTTTTGTTGTCTCATCATTCAAAATCGTTC
CGATCTCTCTCTGCCCAGTACCTTCATATGTCCGTACTTATCCAACACTT
GACGCGGTCGATTCCCGTGGCAACAGGCTAACTAAAAGGTACACTCAAGT
AAACTGGCCCCGAGGGATCCGCAAGTCAAAATAAATCAACGACAGATATT
CTGGAGTCCTCTGTTCCCACTGCGCGCTATGCGAGGTAACAACTGAGACT
AGGAGTCAGCATCACGGGCCAGAGAGAAAGAGGTACACCCCCTTGGTTCA
ATCGTGGTACTTCACAACGCAAGAAGAGACAAGGCCATCTATCACATAAC
AAGAGAGAACAAGAGAAAAAAGAGAAGAAAGAACAAAGAATAAAATTGAA
GGACAAAAAGGGACAAGGACGAAACAAGAAATGAAAGACAGAAAAAGGCA
CTCGGTGGAGAGAACACTTACAACAAGTAAAAACATGGCCACCAACAAGC
GATACATTGTAATGGTAAGTCATCACTCGTGGGGAGTTGGTGCAATGGTG
CAGCGTTGGGGAGGGGGAATTGGCTAAAAGAAATTCAATCCGGCACGTGT
CGCGCCATTCGGTCCGTCTCTTCTCGTTTGCTTTCTTCCCTCGTCGTCTC
GTCCGTCTTCTGTCCCCTTCCCGCCCCATTGGTTGTTGGCTTGTGGTCTC
GTTTGAGCGCTCGTTGCAGCACGGGCCCGCCATTTAGAAAAAAATCCGTC
AAGAAAGCAGGGCTTTTTGCGACAACTAAGAGAAAAATCCGTCAAGAAAG
TAAGGCTCAATCTCGGCCACACATAGGAAACGTCCCAAGAAGAAACACGA
TCGATCGTGTAATACCCCCAATGCATTAGAAACGAGGGTTGCTGGGGGAG
CGGGTCTGATAAGAAACGTCCCACTCTGCTCCTTCCGTGCTCCCACTCCC
TCCGTACCCATAGCTTCACAAGTGTTTTTTTTCGGAGGGGGGGAGAGTTA
TTATTGTCGCTCCCCTCCCCCCGCGTCCGCACTAACTACTCCGCGCCTCC
GCGGGCTGCTTTTCCCATTGCTGCATGAATGTTTGGTATGTTGTTGTAGT
CTTCGCCAGAACAAAAAAACTAAGAAATAAGAGAATCAGGAGGGTGTGAC
ATAAGAACTGCCTTTTAAGATAATATAGACGACTTCGGCTGACCCTTCGA
CCCAAAAGAAGAGACTGAGCCTCGACCCGATATTGGCGTTTCTTATCTAG
GGGGCCGTACTACATGGGCGGTCTCTAGGTTGGAGGTTTGCTACAAGCCC
TTGCCTGAATTGTGGTTGCCGCTCCTTGCAAACACATGAGAGCGAGATGG
CCGCACCAAGAGAAGGCCGTTGGTACTGCTGTGTGTCGCCGATCGCTTGT
TTCAAGTCGCAAGTGTGGTACATTTTAATCAAACAATTTTGTATGCATAC
CCATGAAGAGCCTATCGGCTACATACACTTCGGCGGTGTACCTGTTCTTT
TTTTGGGCGTTTTTTGAGGCTGCGCATACATGCGTTCTACAGGGCATTCC
TGTTTACAAGTGGCATTGGCGTGTGACCACTGAAGAAGTTTCCCACGTGT
CACTCGCAGACATGAGCACATTAATAACCAGTACCTGGTACTACGGATGA
GTTGTTGCGCCGTCTCCACCACCATACTTGACCCAGACACAGGAACAACA
CAGGATCATTTCAATGTTTACCTGGTTTTCATGTTCTGTGACAACTCTTA
TTGGACCGTGTAACTGCTTGACCCCAGCCAATACTCCTGATGGGCCCGGT
TCTAAAGTAAATCGGGCCGGTATGAGCTGTAGTCGTGGTCACCTTTTACA
GCAGAACCGGTGCCTGGTAAGGGGCGTTTTATAACCATAGCTGTGTATCG
CGCTTTTCTTCCAATTTTTTCCAAAATTGCAATTTCCGACTTTCCATGTT
TTCATTTTTTTTCCAAAAAATTTTGAACGAATTCCAGTTTTTTCGGTACC
AGTAGTTGCCAAATTTCTAAATTTCCATTTTGTTCGCTTGGCCGCAGAGC
GAGGTTCAACGGTCTCCAGGTTTGGAAATTGACAATTTGAAAGCGAAATA
CTGCTGCTGTACATAGAGGTAGCTGCTGTAAAAACGTAAATGCGGCCCTA
AGGTGAATCATGCGGGCACATGTCATGCGTGCCGGCACTGCTGAGGGACC
TTTCCTTGCTGCACACGGTGATGGGATGCATCCTGCGCTTGACAAATCAC
TTGTGCTGTAGGCGGTGTTCACAGAATGACAACTCCCTCTCTATTCTTCT
CTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCATCCAACACGAAAAGGTGG
TGGTGCGGCAAAGACGGCACGAGGTCCGGCGGGCGGTCGTCGGCTGCTTC
CTTCTAACCCTTCTTTTCTACCTACTCGATGCGAGACATCCCAAGGTGCG
TGTGGAATTTTCAACCAACAGACGTGGTCTCCGTCCATGGATGACGACCA
ACAAACAAACGTGGTTCCTTTGCATAAGACTATGAACCAATGGTCTTTAT
GCATGGACCATGAACGAATGTGGTTTCAATGCATGGGCTCCTGTGAACGA
ACGCGGTTTCTATGCATACAAGCACTCAAACATGAGGTGGCGTTGTTGAT
CGGCACCCGCTGTGGGCTTGACGGATTTGTAGCCTTTGGGTTTTCTCGAT
TGCGTGCTCGCACCGCCTGCATCAGACGTTGTCGCGAACAGCTATTTCTG
CCTGGGTTCGATTGTGAGCGAGTGTTTCATGAGATACAAGTACGTCGGAG
AGAGCGGAAATGGACCGTGTTTTTTGGGCGTCTCTGGAACTAGAAACGCC
CGCGCCACGTAAAATAGTTCACCAATGGGGAACGAAGTCTCTAGATTTGT
AGCCTTTGGGTTTTCTCGATTGCGTGCTCGCACCGCCTGCATCAGACGTT
GTCGCGAACAGCTATTTCTGCCCGGGTTCGATTGTGAGCGAGTGTTTCAT
GAGATACAAGTACGTCGGAGAGAGCGGAAATGGACCGTGTTTTTTGGGCG
TCTCTGGAACTAGAAACGCCCGCGCCATGTAAAATAGTTCACCAATGGGG
AACGAAGTCTCTAGGCAGCACGAACAACCGTTTGTAGTTCGTGGGGTTGA
GCGTGTGCGTTTGCATCTTGTTATAGTGAGTGTCAATCGTCCCTAGTAGC
TGTTTTTGATCTTGCCTGGCATGATTGGTTTCTCAGCGCAGGGAACTAAG
GACAGACTTCACCAAGTTCGTTACTCTCTTTGTTGCCTCTTTTCTTCCCT
CGGCTCGTCTCAATCTTTAACCTTGGGCGTGTAAATCGAGCCTCCAATCA
TCGCTGAACTGAACGTTTGTTGCCGCTCTTCCTCCGCCTCCCGTCTCAAC
CTTTTAAACCCTGGCGTGCCATCCTCCAGTCATCGCTGTACTGCACACGG
CACGCCATTATGCCGGACAACGAACTCGAGGCTGCCAAGGGGCTCCACGT
GGAGGACATCGACTGCAGCCTGGTGGTGCGCCCCACCAGAACGGCGCTCG
ATCTAAGGTTCTTCGGGGAGGTAAGGAGTCTGTCCCGACAGAGAGAGTAC
TGGCCGGCCGTCGAAAAGTTCTTGTGATTTATCGTTTCTGTTTTTTGGGC
ATCCTTGATCCCCCCTCGTGTGTAAGGTTCTTCGGAGGCGTGAGGGCAAA
AGAGCATTGGCCAATTTCTTGAAATGTTACTTTTGTCAGTCTTTTTGTGC
ATCCTTGGTCCCCCCTCGTGTGTAGCTCTTGGGAGAGGTAAGGGGAGTCT
TTGAGAAAAGAGCGCTGGTTAATTTCTTGGAATTTTCGTGGGGTCAGGTT
TTTTGCACATCCTTGGTCACCCTCGGGATACATCCGTCGTCGTCTCTTGT
GCCATCTTTCTGTTTTCCTTCGTTGCTGCCGCGGAGCTGGACAAAAACCC
ACCCGCATCCTCTTGCACTGACGTGTTCGCCGGCCAGGGTCCAATAAGAG
CTTTTCCCACTGCGCTCTGTGCTACCTCTCGCCGCCGAGAGCTCGCGAAG
AAGCAAGAATGCAACCCTCTCGCCAATCCCCCCCCAACAGGTATCCTACA
GCTTCGAGATAGTGGCGGCGCGTCTCGTGAGGCCGCCGAAGCGCCCGCCG
GACGCTAGAAGTGGCCGCTGCCGCAACAAATGTTCACCGGGGAAGGTGTG
CCCGTGCAACCATGACAGTCCCGCGCGAAACCGCAGGCTTGCGGAGGACG
TCGAGTCTCCCGGGAAGACGGAGGTCGCAATTCGTTTGCCTGAGGGGGAC
GGGGAGGGTCAGGAGGGAGGGGCGGGGAGGGGAGGTGAGGGCGGCGGCGT
TCATCCGCACCACTCGCTCAATATGGGCGTCAACGACGTGGCCACGCTGG
TGCTGGAGGACAACCAGGGCATCACCTACGATTTTTATACGTTCCAAGTA
GGTTGTTTGTCTGTTCACGCGAGCAGACCTTTCATTATTATCGCACTTAT
TGCTGTGTGCTCGGTTCCGGTACGTTGGCGGTTGGTTACCCTGCCGACCG
CAAGGAATAATCCGGTCTGTGTCCCCCCCCCCCCCCTTTGCCGATTCGGG
CAGGACGAGGCGTTGGCTGAACGGATGCTCGAAAAGGTAGACAGTTTCAT
CCGAGAAGCTAGGCAAGGCGGCAACAGCAACAGCAACAGCTTAACATCCC
ACGGGCACGGGGCGGGGGCGGGGGCAAAGGGCGCCGCCGAGCAGGCTCCG
CTGGAGCTGGAGGTCCACTACGACGACAGCTGGCTGGACGAGATGGCGTG
CGGCTTGTTCTTGGTGATCGCGCTGGCGCTGATGACCCGGCCGTACGTGG
AGGTAGGCTCAAGTCAACAGAAGGTCACTCTGTGGTACGCAAAGCAAGTA
GCAGTCTGCCTCTTTTGTATCCCCCCCCTTCCCCCTCCCCGTGTGTGGGA
ACAATGCTCCCTCCTCTCGAGGACGCGTGATAATTGGTTTATTCACCGCG
AAGGTATTCAAAACATGAGTCGCCCCCCCCCCTTCTGCCTGGTACGGTGA
GAACCCGGCGTGCTCCGTCCCGGCTTTGTAGGGATGCGAGTTCAATGGTC
TAACGACTACGGTATGCACGACTATGAGTACACCCCCCCCCTTTTGGCTC
GAACTCCGCCATGCCGATGTAAGTATGTAGGTGAAGGAACTCGAAAATCA
GAGGGAATTTCGTGGTGGGAGGGACTGGCTCTCGTGTTCGGCACCCACGT
TCGGTGCCATGACATTTCGACGCAGGACAATCACCGTCGCACTGCTGTGC
TTGGCGTGGTTTTCCTTACTATGGGGTGGTATGATGCCCCCGCATCGATG
CTGAGCCCCCTATGCGCTGACGCACGAAGAAGCTCATTCCGTAGCGGTCA
TACCCATGGACATGAAAGGCTGCATGGTAGTGCTCAGGGATTTGGCCTGC
CTTCTATACCGGGCACCGGCCAGCACTACTCCGAGTATGAGACAACTTAA
GTTTACCATCTGTGGCACCACGCGGTTTTTTCTAGCCTTGCAGGGCGATG
TTACCGGCCTGTGCTTATGCTGCCTTGTAGGGACCAACCACTGCTCCACT
GCTGTGGTTTTCGCGAGGGTACTGCTAACTGCAGTGTCATTTCGTCTGCG
GCCGTCTGACACTCTATTGAGGCTGGAAGCATAGGCTCGATACACACGGC
ACAGCCGCCTTTGGTCCCTCTTCTGGTTGTTTCAAAGGTTTCGAGGCCCG
ATTACTTCACCAACACCAAGCTCTCGAGCAACAACCAAGCTCTCGAGTGC
CGTGTTCGTCCCCAGCGATTAACCGCTCCAAATAATCCGATCCCTCCCCG
CCCCCCCCCTATTTATGCCTGTCGTACAGGTGGTTGAGTTTGACGCGGAT
TCTGGGGCGATGGCCCTGGACAGGTGGAACCTGTTCAACTGCGGGGTGTT
TCGTTACTCGTGCGCTCTGGAAAACATCAGCAAGATCGAGATCACGGAGG
TACAATACAGACATCCCACACGGTTGCACTAGTTTCCTTGCGACATGTGC
ATGCGCCGAACCATTACACGCGCCACCCTGTATTTTCGATTTTTTGATCG
AATGAATTGGTACCCATATTGCATATGGTAGTAGAGTATACTACGGAGTA
TAACTTTCTTGCGAGATGTGCATTCGCCACACTCAGGGAGTGAGAGAACT
TGTACACGCACCACCCTGTACTTCCGACTTGTTGATCGACTGAATTGGTA
CATATATCGCATATGGTACAAGTGGCAAAAGTTTTCTTGCGACATGTGCA
TTCGCCGCACGCAGGGAGGGAGATAACTCTAACGCGCGCCACCGTGTATT
TTCCTACTTTTCAATCGACTGCAGCCCAGGCACGCTGACATCCCATGTTG
TTGTTCCTGCCCCCTGGTCTATGGGAAGAGCTGTCTTTCCCCTCCTCCGT
CACGGCTCCGTCCTTGGCCTCTTCCTGTCCGTCTGGAGCAATTCCTCGAT
GGTTAACACTCTGGCAGGTACCCCCTCCCCCCCCCCAGCGCGCGCCGTGC
TCCTTTGGGATATATAGTCAAATCACAGGTATAATCAAGCGCGCGTTGCC
CCCTCCCCCCAAAAATCCCAGGGGAACGTGTACATGATGTCGGCGCACGC
CTTCGAGCACCTACGGCAGACCAAGGAGTTCGGACTGCGGGTGATCTTCT
CCGTGCCCCTTGGCGCTAGCAAGGAGACCACAGCACATCCCCGGTCCCCC
CGGCCTAGCAACGCCGCCATGAGCCTCTCGGATACCGGTGGCAGCAGCCC
CAGTAGCGACGGCGATGGAATTCGTGCCGTTTCGGGTACCGTCGGCGGTG
CGCCGGTGGCCCGTGGGACCGCTCGGCGTGCAGTGGGTGCCCCGCGACGA
AGAAGATGGGGGGTCTTGTTTCGGAGGCTGCTGCTTTGTGGGAGAGCGGG
GTGGTGTTTTGGGGGGCGTGGGTGGTGGAGACGACCAGCGGCGAGGTGCG
TTTGAGAGAGAGAGAGAGAGATCGTGCTTTTGATTTGTCACCGCTGCTGT
CGATGGAATTTGGGAAGGGATGCAACGAGCGTGTAGGCGGTGGTTATACT
TTCAGCGGCGGACGGCACGATGTTTTTTGACAGGAAGGACAGATGACATC
GTAGCAGTCGAAGAGGACGTTCTTCGTGCATTTGTCAGCGAGTTCCCGCG
CGTAAGAGACAACAACGTTCAAGGTCGTTTGCGTGATCAGGAGTATACAG
TAATTTAAAACCTTGCGTTCGCCCGAGGAACAAATGCACGCAAAAACCGA
TGGCATCAGTTAAGGTTGCTGTTCTCAGCGGCCGAAGCAAGCTCAAACTT
GCTTGCCCAAAGGAGTAATTCCAAGCGCGGTGTATCGTTCCTTGGTTTCG
TGCGGGATGATGATTACTCGACCGCGAGTCGTTCGACACAGCTTTGAGAG
CAAGCTCGGAGGGTCTCTCAACACTTGGTAGAGAGAAGCAAGCGCACACA
GCAACGGGCAGAGTGGCAGCGAAGCGACGTCGAACTGTCAAAGAGGTACA
GATTCAGCTGAATTTCGCCGCTGGTCTTTTGTTCTATCCACCTCGCCGAT
AGATGTGTCCTTCCGCCAGCCCGGCGGTTGTCAACCAGATTTAGGGGCGT
TCACGGTTGACATACCCTAACAAGCAATGCTACCACGGACATCCGTGAAC
TTGGGCCGGCAACTCGTGCGGCACCTGACGATGGTGTTCAGCTTGTTTCC
AGCGCACCCGGGACCAAAATTCGTTATCATATGCCCTGTTCCAGGGTATA
TTCAATGCAGTAAGTACGTCGTGCGTGTTATGATGCCAGGGTCTTGCCGT
AGGAGTCCGCTCTCATCGTCGCTGGGGTCTTTGTGGATTATTGGTTTTCT
CCACAATCGCCCCTTCCCCGGCTTTGTAGGGGTGCGAGGTTGATGGTCTA
ACGACTACGGCATGCGTGTACATGAGTACACCCCCCCCCCCGCCCCTTAC
CCTACCCCCAGACACACCCACCCACCTTACCCCCGCCCCTTCCGTCCTGC
CATATCTCCCACTCGCCGTACTGTTGCTAATCGTGCTGGTGATTCCGTGC
TACCAACGTTGACAGGGGCGTTCTCAGCACCTCGGGGGAGTTGATGTATC
TGAACCTCTTGTTTGGGAAGAAGGAGCTCGACGACCGGAATCTGCGTAGG
CCTGTCGAGATGGTGAACGAACTGCTGCTGCGGTTTGCCAAGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1904:4860..14804+

>mRNA_Ecto-sp13_S_contig1904.6050.1 ID=mRNA_Ecto-sp13_S_contig1904.6050.1|Name=mRNA_Ecto-sp13_S_contig1904.6050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1904:4860..14804+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTCGCACTCGCTCGCTCGCTCCCCTACTCTCTACCAGCCCGCCCCTCA
ACGCTTTGCCATGGAAGTCCTGGAAAAGACAAAGCGTAAGGTGGTGGTGC
GGCAAAGACGGCACGAGGTCCGGCGGGCGGTCGTCGGCTGCTTCCTTCTA
ACCCTTCTTTTCTACCTACTCGATGCGAGACATCCCAAGTCATCGCTGTA
CTGCACACGGCACGCCATTATGCCGGACAACGAACTCGAGGCTGCCAAGG
GGCTCCACGTGGAGGACATCGACTGCAGCCTGGTGGTGCGCCCCACCAGA
ACGGCGCTCGATCTAAGGTTCTTCGGGGAGGTATCCTACAGCTTCGAGAT
AGTGGCGGCGCGTCTCGTGAGGCCGCCGAAGCGCCCGCCGGACGCTAGAA
GTGGCCGCTGCCGCAACAAATGTTCACCGGGGAAGGTGTGCCCGTGCAAC
CATGACAGTCCCGCGCGAAACCGCAGGCTTGCGGAGGACGTCGAGTCTCC
CGGGAAGACGGAGGTCGCAATTCGTTTGCCTGAGGGGGACGGGGAGGGTC
AGGAGGGAGGGGCGGGGAGGGGAGGTGAGGGCGGCGGCGTTCATCCGCAC
CACTCGCTCAATATGGGCGTCAACGACGTGGCCACGCTGGTGCTGGAGGA
CAACCAGGGCATCACCTACGATTTTTATACGTTCCAAGTGGTTGAGTTTG
ACGCGGATTCTGGGGCGATGGCCCTGGACAGGTGGAACCTGTTCAACTGC
GGGGTGTTTCGTTACTCGTGCGCTCTGGAAAACATCAGCAAGATCGAGAT
CACGGAGGGGAACGTGTACATGATGTCGGCGCACGCCTTCGAGCACCTAC
GGCAGACCAAGGAGTTCGGACTGCGGGTGATCTTCTCCGTGCCCCTTGGC
GCTAGCAAGGAGACCACAGCACATCCCCGGTCCCCCCGGCCTAGCAACGC
CGCCATGAGCCTCTCGGATACCGGTGGCAGCAGCCCCAGTAGCGACGGCG
ATGGAATTCGTGCCGTTTCGGGTACCGTCGGCGGTGCGCCGGTGGCCCGT
GGGACCGCTCGGCGTGCAGTGGGTGCCCCGCGACGAAGAAGATGGGGGGT
CTTGTTTCGGAGGCTGCTGCTTTGTGGGAGAGCGGGGTGGTGTTTTGGGG
GGCGTGGGTGGTGGAGACGACCAGCGGCGAGGGGCGTTCTCAGCACCTCG
GGGGAGTTGATGTATCTGAACCTCTTGTTTGGGAAGAAGGAGCTCGACGA
CCGGAATCTGCGTAGGCCTGTCGAGATGGTGAACGAACTGCTGCTGCGGT
TTGCCAAGTGA
back to top