mRNA_Ecto-sp13_S_contig19037.6047.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19037.6047.1 vs. uniprot
Match: D7G721_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G721_ECTSI) HSP 1 Score: 475 bits (1222), Expect = 1.870e-153 Identity = 403/513 (78.56%), Postives = 410/513 (79.92%), Query Frame = 1
Query: 1 GSSSLLSDLVWRYLELGARGRVCVAALRRTARQVARSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAATRLEEGLSLELMPLECLCRLVNADVENHVAATSTAAMATSPTAASSLRGEEQTSSTSNGRYVEKNVGRCRSAEDTAMATSTTTMGSLMDGAKTPSVVLVAYVELLRTLVTRLESGGARGGRAALEEGXXXXGGPAGVAPGVRALDLETLFRGTVKCSKALPLLRKAQAASKTALLAKLTPQKRRGESLAALQNTKKASVSASRRSGRXXXXXXXXXXXXXXXXXXXXXXSIDASRGGGSRDPARRLGGDSLRRRGGRAVSGGLRGVMEGRDSESXXXXXXXXXXXXXXXFSDEDSRDSEWSXXXXXXXXXXXXXXXXXXXXXEAGDEPRYPRTSTPKGKRXXXXXXXXXVKKTGTGDPWSGTPAGARRAGSASSSFAAGG-GRTANGEANPWEGLPGLSLCQFWRYRLLLEVVLAARGGDGGGDERSDGGGWAEVPRTEFVEV 1536
GSSSLLSDLVWRY ELGARGRVCVAALRRTARQVA SGXXXXXXXXXXXXXXXXXXXXXXXXXX RAATRLE GLSLELMPLECLCRLVNADVEN+V ATSTAAMATSPT ASS RGEE+TSSTSNGRYVEKN GRCRSAEDTAMATSTT MGSLMDG KTPSVVLVAYVELLRTLVTRLESGGAR G AAL XXXX GPAGVA GVRALDLETLFRGTVKCSKALP+LRKAQA SKTALLAKLTPQKRR XXXXXXXXXXXXXXXXXXXX SIDASRGGGSR AR LGGDS+RRRGGR V GGLRGVMEG DS+ XXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXX EPRYPR STPKGK XXXXXXXXX GRTA+ EANPWEGLPGLSLCQFWRYRLLLEVVLAARGGDGGGDERSDGGGWAE+PRTEFVEV
Sbjct: 142 GSSSLLSDLVWRYPELGARGRVCVAALRRTARQVAGSGXXXXXXXXXXXXXXXXXXXXXXXXXX---RAATRLEGGLSLELMPLECLCRLVNADVENYVIATSTAAMATSPTTASSPRGEEETSSTSNGRYVEKNDGRCRSAEDTAMATSTTAMGSLMDGVKTPSVVLVAYVELLRTLVTRLESGGAREGGAALXXXXXXXXGPAGVALGVRALDLETLFRGTVKCSKALPILRKAQATSKTALLAKLTPQKRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSIDASRGGGSRGTARWLGGDSVRRRGGRGVIGGLRGVMEGGDSDXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXEPRYPRASTPKGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRTADVEANPWEGLPGLSLCQFWRYRLLLEVVLAARGGDGGGDERSDGGGWAELPRTEFVEV 650
BLAST of mRNA_Ecto-sp13_S_contig19037.6047.1 vs. uniprot
Match: A0A6H5J6E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6E0_9PHAE) HSP 1 Score: 446 bits (1146), Expect = 6.140e-140 Identity = 377/517 (72.92%), Postives = 393/517 (76.02%), Query Frame = 1
Query: 1 GSSSLLSDLVWRYLELGARGRVCVAALRRTARQVARSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAATRLEEGLSLELMPLECLCRLVNADVENHVAATSTAAMATSPTAASSLRGEEQTSSTSNGRYVEKNVGRCRSAEDTAMATSTTTMGSLMDGAKTPSVVLVAYVELLRTLVTRLESGGARGGRAALEEGXXXXG----GPAGVAPGVRALDLETLFRGTVKCSKALPLLRKAQAASKTALLAKLTPQKRRGESLAALQNTKKASVSASRRSGRXXXXXXXXXXXXXXXXXXXXXXSIDASRGGGSRDPARRLGGDSLRRRGGRAVSGGLRGVMEGRDSESXXXXXXXXXXXXXXXFSDEDSRDSEWSXXXXXXXXXXXXXXXXXXXXXEAGDEPRYPRTSTPKGKRXXXXXXXXXVKK-TGTGDPWSGTPAGARRAGSASSSFAAGGGRTANGEANPWEGLPGLSLCQFWRYRLLLEVVLAARGGDGGGDERSDGGGWAEVPRTEFVEV 1536
GSSSLLSDLVWRYLELGARGRVCVAALRRTARQVA SGXXXXXXXXXX XXXXX TRLEEGLSL AAMATSPT GEE TS+TS+GRYV+K G CRSAE+ AMATSTTTMG+LM+G KTPS+VL+AYVELLRTLVTRLESGGARG XXXX GPAGVAPGVRALD+ETLFR K LP+LRKAQAASKTALLAKLTPQKRR ESLAALQN KK SA+R +GR XXXXXXXXXXXXXXXXXXX SI ASRGGGSRD AR LGGDS+RRRGGRAVS GLRGVMEG DSES XXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXX DEPRYPRTSTPKGKRXXXXXXXXX TGTG PWS TP FAAGGGRTA+GEANPWEGLPGLSLCQFWRYRLLLEVVLAARGG GGG+ERSDGGGWAE+PRTEFVEV
Sbjct: 572 GSSSLLSDLVWRYLELGARGRVCVAALRRTARQVAGSGXXXXXXXXXXSAGVRGSAASTEGEXXXXXXXXTRLEEGLSL-------------------------AAMATSPTTXXXXXGEEATSTTSDGRYVKKKDGGCRSAENRAMATSTTTMGNLMNGVKTPSIVLMAYVELLRTLVTRLESGGARGXXXXXXXXXXXXXXXAEGPAGVAPGVRALDVETLFR------KTLPILRKAQAASKTALLAKLTPQKRRRESLAALQN-KKTPASANRLAGRTXXXXXXXXXXXXXXXXXXXTRSIHASRGGGSRDTARWLGGDSVRRRGGRAVSSGLRGVMEGGDSESEXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEPRYPRTSTPKGKRXXXXXXXXXXXXXTGTGGPWSETPXXXXXXXXXXXXFAAGGGRTADGEANPWEGLPGLSLCQFWRYRLLLEVVLAARGGVGGGEERSDGGGWAELPRTEFVEV 1053
BLAST of mRNA_Ecto-sp13_S_contig19037.6047.1 vs. uniprot
Match: D7G719_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G719_ECTSI) HSP 1 Score: 418 bits (1074), Expect = 8.290e-127 Identity = 355/515 (68.93%), Postives = 364/515 (70.68%), Query Frame = 1
Query: 1 GSSSLLSDLVWRYLELGARGRVCVAALRRTARQVARSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAATRLEEGLSLELMPLECLCRLVNADVENHVAATSTAAMATSPTAASSLRGEEQTSSTSNGRYVEKNVGRCRSAEDTAMATSTTTMGSLMDGAKTPSVVLVAYVELLRTLVTRLESGGARGGRAALEEGXXXXGGPAGVAPGVRALDLETLFRGTVKCSKALPLLRKAQAASKTALLAKLTPQKRRGESLAALQNTKKASVSASRRSGRXXXXXXXXXXXXXXXXXXXXXX-SIDASRGGGSRDPARRLGGDSLRRRGGRAVSGGLRGVMEGRDSESXXXXXXXXXXXXXXXFSDEDSRDSEWSXXXXXXXXXXXXXXXXXXXXXEAGDEPRYPRTSTPKGKRXXXXXXXXXVKK--TGTGDPWSGTPAGARRAGSASSSFAAGGGRTANGEANPWEGLPGLSLCQFWRYRLLLEVVLAARGGDGGGDERSDGGGWAEVPRTEFVEV 1536
GSSSLLSDLVWRYLELGARGRVCVAALRRTARQ+A SGXXXXXXXXXXX RAATRLEEGLSL G E+T STSNGRYVEKN GRCRSAEDTAM T TT MGSLMDG KTPSVVLVAYVELLRTLVTRLESGGARG PAGV GVRALDLETLFRGTVKCSKALP+LRKAQA SKTALLAK TPQKRR ES AALQN +K SVSA XXXXXXXXXXXXXXXXXXX SIDASRGGGSR AR LGGDS+RRR R V GGLRGVMEG DS+ XXXXXXXXXX FSD XXXXXXXXXXXXXXXXXXXXX PRYPR STPKGKRXXXXXXXXX TG G PWS AAGG RTA+ EANPW+GLPGLSLCQFWRYRLLLEVVLAARGGDGGGDERSDGGGWAE+PRTEFVEV
Sbjct: 997 GSSSLLSDLVWRYLELGARGRVCVAALRRTARQLAGSGXXXXXXXXXXXVRGSAASTEGEGEEE---RAATRLEEGLSL---------------------------------------GGEETWSTSNGRYVEKNDGRCRSAEDTAMTTPTTAMGSLMDGVKTPSVVLVAYVELLRTLVTRLESGGARGXXXXXXX-------PAGVVLGVRALDLETLFRGTVKCSKALPILRKAQATSKTALLAKFTPQKRRRESFAALQNKQKISVSARXXXXXXXXXXXXXXXXXXXXXXXXRRTRSIDASRGGGSRGTARWLGGDSVRRRVDRGVIGGLRGVMEGGDSDXXXXXXXXXXXEVV--FSDXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXPRYPRASTPKGKRXXXXXXXXXXXXXXTGAGGPWSEXXXXXXXXXXXXXXVAAGGSRTADVEANPWKGLPGLSLCQFWRYRLLLEVVLAARGGDGGGDERSDGGGWAELPRTEFVEV 1459 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19037.6047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19037.6047.1 >prot_Ecto-sp13_S_contig19037.6047.1 ID=prot_Ecto-sp13_S_contig19037.6047.1|Name=mRNA_Ecto-sp13_S_contig19037.6047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=512bp GSSSLLSDLVWRYLELGARGRVCVAALRRTARQVARSGGGGDGGGKGGGSback to top mRNA from alignment at Ecto-sp13_S_contig19037:3..3187+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19037.6047.1 ID=mRNA_Ecto-sp13_S_contig19037.6047.1|Name=mRNA_Ecto-sp13_S_contig19037.6047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3185bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19037:3..3187+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19037:3..3187+ >mRNA_Ecto-sp13_S_contig19037.6047.1 ID=mRNA_Ecto-sp13_S_contig19037.6047.1|Name=mRNA_Ecto-sp13_S_contig19037.6047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1536bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19037:3..3187+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |