mRNA_Ecto-sp13_S_contig19032.6044.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19032.6044.1
Unique NamemRNA_Ecto-sp13_S_contig19032.6044.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19032.6044.1 vs. uniprot
Match: D7G473_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G473_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 3.500e-49
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:    1 QARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKSKSKD 246
            QARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKSKSKD
Sbjct:  169 QARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKSKSKD 250
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BLAST of mRNA_Ecto-sp13_S_contig19032.6044.1 vs. uniprot
Match: A0A835Z838_9STRA (Fibrillarin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z838_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.120e-39
Identity = 68/79 (86.08%), Postives = 74/79 (93.67%), Query Frame = 1 
Query:    1 QARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKSK 237
            QARIVALNSHYFLKNGGHCVIS+KASCVDSTA+PEAVFAQEVSKL++E FKP EQ+TLEPYERDHAVV+A YR  KKSK
Sbjct:  169 QARIVALNSHYFLKNGGHCVISVKASCVDSTAAPEAVFAQEVSKLRSEGFKPLEQLTLEPYERDHAVVVAEYRAAKKSK 247
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BLAST of mRNA_Ecto-sp13_S_contig19032.6044.1 vs. uniprot
Match: A0A7R9WR07_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WR07_9STRA)

HSP 1 Score: 137 bits (344), Expect = 4.900e-39
Identity = 67/82 (81.71%), Postives = 76/82 (92.68%), Query Frame = 1 
Query:    1 QARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKSKSKD 246
            QARIVALNSH+FL+NGGH VI+IKASC+DSTA+PEAVF +EVSKL++ENFKP EQ+TLEPYERDHAVVIA YRP KK KSKD
Sbjct:  120 QARIVALNSHHFLRNGGHAVIAIKASCIDSTAAPEAVFRREVSKLQSENFKPLEQLTLEPYERDHAVVIAEYRPNKKKKSKD 201
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BLAST of mRNA_Ecto-sp13_S_contig19032.6044.1 vs. uniprot
Match: A0A7S2UWV2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWV2_9STRA)

HSP 1 Score: 136 bits (342), Expect = 6.560e-38
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 1 
Query:    1 QARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKSKSKD 246
            QARIVALN+HYFLKNGGH VISIKASC+DSTA PEAVFA+EV KL+TE FKP EQ+TLEPYERDHAVV+  YRPPKK+K  +
Sbjct:  191 QARIVALNAHYFLKNGGHFVISIKASCIDSTAPPEAVFAREVKKLQTEQFKPAEQLTLEPYERDHAVVVGAYRPPKKAKKSE 272
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BLAST of mRNA_Ecto-sp13_S_contig19032.6044.1 vs. uniprot
Match: A0A1E7FV03_9STRA (Fibrillarin n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FV03_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.580e-37
Identity = 67/82 (81.71%), Postives = 75/82 (91.46%), Query Frame = 1 
Query:    1 QARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKSKSKD 246
            QARIVALN+HYFLKNGGH VI++KASC+DSTA+PEAVF +EVSKL+ ENFKP EQ+TLEPYERDHAVVIA YRP KKSKS D
Sbjct:  146 QARIVALNAHYFLKNGGHAVIAVKASCIDSTAAPEAVFRREVSKLQKENFKPLEQLTLEPYERDHAVVIAEYRP-KKSKSSD 226
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BLAST of mRNA_Ecto-sp13_S_contig19032.6044.1 vs. uniprot
Match: A0A3P7DE58_WUCBA (Uncharacterized protein n=1 Tax=Wuchereria bancrofti TaxID=6293 RepID=A0A3P7DE58_WUCBA)

HSP 1 Score: 130 bits (327), Expect = 1.840e-37
Identity = 63/80 (78.75%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:    1 QARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKSKS 240
            QARIVA+N+H+FLKNGGH VISIKA+C+DSTA+PEAVFA EV+KLK E FKP+EQVTLEPYERDHAVV+A YRP KK +S
Sbjct:   43 QARIVAINAHHFLKNGGHVVISIKANCIDSTAAPEAVFAGEVNKLKEEKFKPREQVTLEPYERDHAVVVAEYRPLKKKQS 122
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BLAST of mRNA_Ecto-sp13_S_contig19032.6044.1 vs. uniprot
Match: A0A0M3I7W2_ASCLU (Uncharacterized protein n=1 Tax=Ascaris lumbricoides TaxID=6252 RepID=A0A0M3I7W2_ASCLU)

HSP 1 Score: 131 bits (329), Expect = 2.450e-37
Identity = 65/78 (83.33%), Postives = 70/78 (89.74%), Query Frame = 1 
Query:    1 QARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKS 234
            QARIVALN+ YFLKNGGH VISIKA+CVDSTA PEAVFA EV+KLK E FKP+EQVTLEPYERDHAVV+A YRP KKS
Sbjct:   75 QARIVALNARYFLKNGGHAVISIKANCVDSTAEPEAVFAGEVNKLKEEKFKPREQVTLEPYERDHAVVVAEYRPKKKS 152
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BLAST of mRNA_Ecto-sp13_S_contig19032.6044.1 vs. uniprot
Match: B7G8V5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8V5_PHATC)

HSP 1 Score: 134 bits (337), Expect = 1.020e-36
Identity = 67/82 (81.71%), Postives = 75/82 (91.46%), Query Frame = 1 
Query:    1 QARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKSKSKD 246
            QARIVALNSHYFLKNGGH VI+IKASC+DSTA+PEAVF +EV KL++ENFKP EQVTLEPYERDHAVV+A YRP KK KSK+
Sbjct:  237 QARIVALNSHYFLKNGGHAVIAIKASCIDSTAAPEAVFQREVEKLRSENFKPIEQVTLEPYERDHAVVVAEYRP-KKKKSKE 317
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19032.6044.1 vs. uniprot
Match: A0A3P7I1V2_TOXCA (Uncharacterized protein n=2 Tax=Toxocara canis TaxID=6265 RepID=A0A3P7I1V2_TOXCA)

HSP 1 Score: 132 bits (331), Expect = 1.050e-36
Identity = 64/78 (82.05%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 QARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKS 234
            QARIVALN+H+FLKNGGH VISIKA+C+DSTA PEAVFA EV+KLK E FKP+EQVTLEPYERDHAVV+A YRP KKS
Sbjct:  153 QARIVALNAHHFLKNGGHAVISIKANCIDSTAEPEAVFAGEVNKLKEEKFKPREQVTLEPYERDHAVVVAEYRPKKKS 230
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19032.6044.1 vs. uniprot
Match: B8CBC2_THAPS (Uncharacterized protein n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8CBC2_THAPS)

HSP 1 Score: 134 bits (336), Expect = 1.080e-36
Identity = 65/80 (81.25%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:    1 QARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKSKS 240
            QARIVALNSHYFLKNGGH VI+IKASC+DSTA+PEAVF +EVSKL++ENFKP EQ+TLEPYERDH V+IA YRP KK KS
Sbjct:  223 QARIVALNSHYFLKNGGHSVIAIKASCIDSTAAPEAVFRREVSKLQSENFKPLEQLTLEPYERDHCVLIAQYRPSKKKKS 302
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19032.6044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G473_ECTSI3.500e-49100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z838_9STRA2.120e-3986.08Fibrillarin n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7R9WR07_9STRA4.900e-3981.71Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2UWV2_9STRA6.560e-3879.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1E7FV03_9STRA1.580e-3781.71Fibrillarin n=1 Tax=Fragilariopsis cylindrus CCMP1... [more]
A0A3P7DE58_WUCBA1.840e-3778.75Uncharacterized protein n=1 Tax=Wuchereria bancrof... [more]
A0A0M3I7W2_ASCLU2.450e-3783.33Uncharacterized protein n=1 Tax=Ascaris lumbricoid... [more]
B7G8V5_PHATC1.020e-3681.71Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A3P7I1V2_TOXCA1.050e-3682.05Uncharacterized protein n=2 Tax=Toxocara canis Tax... [more]
B8CBC2_THAPS1.080e-3681.25Uncharacterized protein n=2 Tax=Thalassiosirales T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19032contigEcto-sp13_S_contig19032:2012..3052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score166.0
Seed ortholog evalue7.4e-39
Seed eggNOG ortholog2880.D7G473
Model size249
KEGG koko:K14563
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000494,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005732,GO:0006139,GO:0006325,GO:0006364,GO:0006396,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008213,GO:0008276,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0015030,GO:0016043,GO:0016070,GO:0016072,GO:0016074,GO:0016569,GO:0016570,GO:0016571,GO:0016604,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0022613,GO:0030684,GO:0031123,GO:0031126,GO:0031167,GO:0031428,GO:0031974,GO:0031981,GO:0032040,GO:0032259,GO:0032991,GO:0033967,GO:0034470,GO:0034641,GO:0034660,GO:0034963,GO:0036009,GO:0036211,GO:0042054,GO:0042254,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0051276,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140096,GO:0140098,GO:0140102,GO:1901360,GO:1901363,GO:1901564,GO:1990258,GO:1990259,GO:1990904
Exons2
EggNOG free text desc.ubiE/COQ5 methyltransferase family
EggNOG OGsCOG1889@1,KOG1596@2759
Cds size249
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462970.870925-CDS-Ecto-sp13_S_contig19032:2011..21371681462970.870925-CDS-Ecto-sp13_S_contig19032:2011..2137Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19032 2012..2137 -
1681462970.8856692-CDS-Ecto-sp13_S_contig19032:2929..30521681462970.8856692-CDS-Ecto-sp13_S_contig19032:2929..3052Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19032 2930..3052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19032.6044.1prot_Ecto-sp13_S_contig19032.6044.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19032 2012..3052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19032.6044.1

>prot_Ecto-sp13_S_contig19032.6044.1 ID=prot_Ecto-sp13_S_contig19032.6044.1|Name=mRNA_Ecto-sp13_S_contig19032.6044.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
QARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENF
KPKEQVTLEPYERDHAVVIALYRPPKKSKSKD*
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mRNA from alignment at Ecto-sp13_S_contig19032:2012..3052-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19032.6044.1 ID=mRNA_Ecto-sp13_S_contig19032.6044.1|Name=mRNA_Ecto-sp13_S_contig19032.6044.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1041bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19032:2012..3052- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCCCGTATCGTGGCGCTGAACTCGCACTACTTCCTCAAGAACGGAGG
GCACTGCGTCATTTCCATCAAGGCATCGTGCGTCGACTCCACCGCATCAC
CGGAGGCTGTGTTTGCTCAGGAGGTATGTTTTGGTATAGTATGTTGTGGT
GCGGACACGACCACCAGGAGGGGTCAGCTGTTTCGTTTGCCCATGTTACT
GCCCGTCCATCCTTGGTTGCCACGTCCGTGGATTTTGAAGTACCTTTGGC
CAATACATCGCTTTGGCCAATACATCGTCTCCTGAAAAACGAAAATTACT
TTATTAGTTGAGATCGTATAGATTTATTAAATTTGCCAGAGCAGTGGCAA
GTGTGGGAGGATTCGTAGAAGAACTGCTGTCCCTCCGTACACGATTTCTC
TCATACAGAAGCCGGGCTGCACTCACTGGCACCTGGCACCAGGGCTTTTC
GTTGCTTTTTTTCTGTTGAGAATAGAGTTTTTCACCATACGTTCAACGAA
TAGTGGGGCGATTGTGTGCTGGGGGACGGACCTCTGTCCGTGAGTGTACT
CGCCTTGAGTTGGACGCTCTGAACTTTGCTTGGCGATTGTTGCACGTGGC
CAAAGATCGTCGGCCGCAACGCGTTGGCGCCCGATATATTTGATCTCGCC
TCCATATCGTCTCCCCAAAACTATCGTCTCCCCAAACCAATACCCCCAAA
CAAAATCATTCCCCCAACCAAGAACAATTAATCATTTTTATTGTATTAAT
TAAATGAACACCCCCCCATATACTTTGATTTTAGTCCCCTCGCCCACGGC
TTGAAGAACAAATACACGCTTCCAGTCAAACATTGTTTGTAACGTGGTCG
GGTGTCGCCGGTCTTGTTTGTTTTAAGCCTCGTGGTCGTGTCGTCTTGTT
GTATCTTCGTTCCAGGTGTCCAAGCTCAAGACGGAAAACTTCAAGCCAAA
GGAGCAGGTTACCCTAGAGCCCTACGAGCGTGACCACGCCGTAGTTATTG
CGCTCTACCGCCCGCCCAAGAAATCGAAATCGAAGGACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19032:2012..3052-

>mRNA_Ecto-sp13_S_contig19032.6044.1 ID=mRNA_Ecto-sp13_S_contig19032.6044.1|Name=mRNA_Ecto-sp13_S_contig19032.6044.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19032:2012..3052- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCCCGTATCGTGGCGCTGAACTCGCACTACTTCCTCAAGAACGGAGG
GCACTGCGTCATTTCCATCAAGGCATCGTGCGTCGACTCCACCGCATCAC
CGGAGGCTGTGTTTGCTCAGGAGGTGTCCAAGCTCAAGACGGAAAACTTC
AAGCCAAAGGAGCAGGTTACCCTAGAGCCCTACGAGCGTGACCACGCCGT
AGTTATTGCGCTCTACCGCCCGCCCAAGAAATCGAAATCGAAGGACTGA
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