mRNA_Ecto-sp13_S_contig19031.6043.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19031.6043.1
Unique NamemRNA_Ecto-sp13_S_contig19031.6043.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19031.6043.1 vs. uniprot
Match: D7G484_ECTSI (Lysophospholipase l2 pldb, hydrolase of alpha/beta superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G484_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 8.820e-61
Identity = 106/123 (86.18%), Postives = 108/123 (87.80%), Query Frame = 3 
Query:   60 MLRQVLAQCEAAFLAGIEDATTPGSVPSSSXXXXXXXXXXXAGPKQLSAKSAPLEGLRRFSHDGTDGVFMGAAGVPVRYRLFPKYSEGEGDGGGKLQPGVVLLTGLMESMTKYGETIAHLNDR 428
            MLRQVLAQCEAAFLAG EDATTPGSVPSSS            GPKQLSAKSAPLEGLRRFS DGTDGVFMGAAGVPVRYRLFPKYS+GEGDG GKLQPGV+LLTGLMESMTKYGETIAHLNDR
Sbjct:    1 MLRQVLAQCEAAFLAGTEDATTPGSVPSSSSASETAAAAP--GPKQLSAKSAPLEGLRRFSRDGTDGVFMGAAGVPVRYRLFPKYSKGEGDGCGKLQPGVILLTGLMESMTKYGETIAHLNDR 121
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BLAST of mRNA_Ecto-sp13_S_contig19031.6043.1 vs. uniprot
Match: A0A6H5KYM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYM9_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 4.830e-12
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 3 
Query:    3 GEAGQQQLRQRLPAFVEDDMLRQVLAQCEAAFLAGIEDATTPG 131
            GE  Q+QLRQRLPAFVEDDMLR+VLA CEAAFLAG EDAT+ G
Sbjct:   53 GEEKQEQLRQRLPAFVEDDMLREVLALCEAAFLAGTEDATSHG 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19031.6043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G484_ECTSI8.820e-6186.18Lysophospholipase l2 pldb, hydrolase of alpha/beta... [more]
A0A6H5KYM9_9PHAE4.830e-1281.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19031contigEcto-sp13_S_contig19031:440..2047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size628
Hectar predicted targeting categoryother localisation
Exons3
Cds size384
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462970.7910786-UTR-Ecto-sp13_S_contig19031:439..4981681462970.7910786-UTR-Ecto-sp13_S_contig19031:439..498Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19031 440..498 +
1681462970.8318226-UTR-Ecto-sp13_S_contig19031:1862..20471681462970.8318226-UTR-Ecto-sp13_S_contig19031:1862..2047Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19031 1863..2047 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462970.8008642-CDS-Ecto-sp13_S_contig19031:498..5691681462970.8008642-CDS-Ecto-sp13_S_contig19031:498..569Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19031 499..569 +
1681462970.810149-CDS-Ecto-sp13_S_contig19031:1072..12431681462970.810149-CDS-Ecto-sp13_S_contig19031:1072..1243Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19031 1073..1243 +
1681462970.8200648-CDS-Ecto-sp13_S_contig19031:1720..18621681462970.8200648-CDS-Ecto-sp13_S_contig19031:1720..1862Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19031 1721..1862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19031.6043.1prot_Ecto-sp13_S_contig19031.6043.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19031 499..1862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19031.6043.1

>prot_Ecto-sp13_S_contig19031.6043.1 ID=prot_Ecto-sp13_S_contig19031.6043.1|Name=mRNA_Ecto-sp13_S_contig19031.6043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
MLRQVLAQCEAAFLAGIEDATTPGSVPSSSSTSETAAAAAAAGPKQLSAK
SAPLEGLRRFSHDGTDGVFMGAAGVPVRYRLFPKYSEGEGDGGGKLQPGV
VLLTGLMESMTKYGETIAHLNDRRAGS*
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mRNA from alignment at Ecto-sp13_S_contig19031:440..2047+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19031.6043.1 ID=mRNA_Ecto-sp13_S_contig19031.6043.1|Name=mRNA_Ecto-sp13_S_contig19031.6043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1608bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19031:440..2047+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGGAAGCGGGACAACAGCAGTTGCGTCAAAGGCTGCCCGCATTTGTC
GAAGATGATATGCTTCGACAAGTCCTAGCGCAATGTGAAGCCGCCTTCCT
TGCCGGGATCGAAGACGCAACAACACCCGGGTGGGTGGTGAGCCTTCCCG
ACTACCGATGCATTTCTATCTTGGGATAACACCCTCTTTGCACGATTCCA
AACGCTTTAAATTGTAGCCGTGGTGCTCCTGCTCTGTCAGCGCACCTGTT
GGTCAGTGTCACTCTTAAAGATTTGTTGCCTAATGGAGCACCACTTCGGC
TGTGTACCGTTCTTCGGGGAGATGCACAGAGAGAACGCTGTAATTCGCAA
AGCAACAAATCAACAGCCCTCGGTTCCACCACTGCTGTGTGATGTGGTGT
TACCACCGGTCCTCCTGAATTGTGGAGAGCTCGTGCGCGGCAGAACACAC
CTTGACGGCATCTTCACGATAAGCCAGTCACCAAGGACGGCAAATGAGTT
CAGTTCTGACGTCACCACCAATTGAATCTACACTGCTGACGCAAAGCTGA
TACGTGTTGTCTACCAACCCGACGCAGTTACCTCCCCCCCCCCCTTCTCT
CTCTCCGACCCCCCCTCTGCACATTCACAACAGTTCCGTCCCCTCCTCAT
CATCAACCTCGGAAACCGCCGCCGCCGCCGCCGCCGCCGGGCCGAAACAA
CTATCGGCAAAATCGGCGCCGCTGGAAGGTCTTCGAAGGTTTTCTCACGA
TGGAACGGACGGGGTTTTCATGGGGGCCGCTGGCGTTCCCGTGCGGTACA
GACTGTGAGTCCGGTACAGACTGTGAGTCAGATCGCGGTCTCATCGTCTA
CCGTTGGTATTTAATAAGAGGTCTTAAACTCAATCCAAGAAGGCCGGTGA
AAAGTCAGGTGGCCCATTGTTTGGGAGGTTGTTGACAGAATGATCGTGTC
CTAACAAGTTGGTGAGATACAACAGAATCACACTCCGGTGCTTGTGCCGT
ACAGCACTCAAACAATTTACTCGCCCCTCGAAGACCGCCTTGCCGCGGAT
GTTTGTCCGAGGTTAGCGGAAAGCTCTGTCGTGTCTATGCTCCCCCAGTG
TGCAGAAGGCTGTTGAGAGAGCGTACATTTTCCCAGAGGTACTCTGCCAA
TTCATGTCCGAATCGGGGCTTATTCATTCGATATACACCATGCCGTGCAC
AAAGCCCCCTACCCCACGCTAGAGCTTGCCTCACGTAGTGTTCCTTTGGT
GGCGCCGTCCGTTGCTGCTTCAAAACCACAGGTTTCCCAAGTACTCCGAG
GGAGAGGGAGACGGGGGTGGGAAGCTTCAGCCGGGTGTGGTGCTTCTGAC
GGGATTGATGGAGTCGATGACCAAGTACGGGGAGACGATTGCTCACCTCA
ATGACAGGCGAGCTGGATCGTAGTCGGGATTCGACCAGCCGGATGTTTGT
GCTCACGCTTGGTTATGTTGGTGTGGTGACATTTCTCGTCGTCGCTTTCG
CTGTCAGCGTGGTGCGGTCTGCAGGCGCTGTGACGACGTCTGCCTCCCCA
CGGTCGGTTGTATACTATTTTTTCTCCGTCGAGTCACTTCGCGAGGGACA
CCCCTCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19031:440..2047+

>mRNA_Ecto-sp13_S_contig19031.6043.1 ID=mRNA_Ecto-sp13_S_contig19031.6043.1|Name=mRNA_Ecto-sp13_S_contig19031.6043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19031:440..2047+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTCGACAAGTCCTAGCGCAATGTGAAGCCGCCTTCCTTGCCGGGAT
CGAAGACGCAACAACACCCGGTTCCGTCCCCTCCTCATCATCAACCTCGG
AAACCGCCGCCGCCGCCGCCGCCGCCGGGCCGAAACAACTATCGGCAAAA
TCGGCGCCGCTGGAAGGTCTTCGAAGGTTTTCTCACGATGGAACGGACGG
GGTTTTCATGGGGGCCGCTGGCGTTCCCGTGCGGTACAGACTGTTTCCCA
AGTACTCCGAGGGAGAGGGAGACGGGGGTGGGAAGCTTCAGCCGGGTGTG
GTGCTTCTGACGGGATTGATGGAGTCGATGACCAAGTACGGGGAGACGAT
TGCTCACCTCAATGACAGGCGAGCTGGATCGTAG
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