mRNA_Ecto-sp13_S_contig19024.6039.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig19024.6039.1
Unique Name	mRNA_Ecto-sp13_S_contig19024.6039.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig19024.6039.1 vs. uniprot
Match: A0A6H5LEY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEY9_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 1.660e-51
Identity = 100/117 (85.47%), Postives = 106/117 (90.60%), Query Frame = 3

Query:    3 ADPVMATLRGGGRTRSRVVTIQPAEPTAPVDWRQQ--STFLASMDSIGYDSALTHVE-IDSAFAKDTRKRLRELQDKVSTAVSLERAIDQAQKQRRTKEGSRTLQTILTAAAFPLDG 344
            ADPVMA LRGGGRTRSRVVTIQPAEPTAPVDWRQQ   TFLASMDS+GYD+AL H+E I S FAKD RKRLREL+DKVSTAVSLERAI+QA+KQRRTKEGSRTLQTILTAAA P DG
Sbjct:  118 ADPVMAALRGGGRTRSRVVTIQPAEPTAPVDWRQQCTETFLASMDSMGYDNALKHLEEIVSTFAKDARKRLRELEDKVSTAVSLERAIEQARKQRRTKEGSRTLQTILTAAAIPGDG 234

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BLAST of mRNA_Ecto-sp13_S_contig19024.6039.1 vs. uniprot
Match: A0A6H5K847_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K847_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 9.800e-51
Identity = 96/117 (82.05%), Postives = 103/117 (88.03%), Query Frame = 3

Query:    3 ADPVMATLRGGGRTRSRVVTIQPAEPTAPVDWRQQS--TFLASMDSIGYDSALTHVE-IDSAFAKDTRKRLRELQDKVSTAVSLERAIDQAQKQRRTKEGSRTLQTILTAAAFPLDG 344
            ADPV+  LRG GRTR RVVTIQP EPTAPVDWRQQS  TFLASMDS+GYD+AL H+E I S FAKDTRKRLR L+DKVSTAVSLERAI+QAQKQRRT EG RTLQTILTAAAFP+DG
Sbjct:  279 ADPVIMALRGVGRTRPRVVTIQPTEPTAPVDWRQQSAETFLASMDSMGYDNALQHLEKIGSTFAKDTRKRLRGLEDKVSTAVSLERAIEQAQKQRRTNEGRRTLQTILTAAAFPVDG 395

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BLAST of mRNA_Ecto-sp13_S_contig19024.6039.1 vs. uniprot
Match: A0A6H5JA27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA27_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 3.220e-48
Identity = 92/110 (83.64%), Postives = 97/110 (88.18%), Query Frame = 3

Query:   24 LRGGGRTRSRVVTIQPAEPTAPVDWRQQST--FLASMDSIGYDSALTHVE-IDSAFAKDTRKRLRELQDKVSTAVSLERAIDQAQKQRRTKEGSRTLQTILTAAAFPLDG 344
            LRG GRTRSRVVTIQPAEPTAPVDWRQQST  FLASMDSIGYD+AL H+E I S FAKDT KRLR L+DKVSTA SLERAI Q +KQRRTKEGSRTLQTIL AAAFP+DG
Sbjct:    3 LRGVGRTRSRVVTIQPAEPTAPVDWRQQSTETFLASMDSIGYDNALKHLEKIGSTFAKDTHKRLRGLEDKVSTAASLERAIGQTRKQRRTKEGSRTLQTILNAAAFPVDG 112

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BLAST of mRNA_Ecto-sp13_S_contig19024.6039.1 vs. uniprot
Match: A0A6H5J7C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7C0_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 5.270e-47
Identity = 93/110 (84.55%), Postives = 101/110 (91.82%), Query Frame = 3

Query:   24 LRGGGRTRSRVVTIQPAEPTAPVDWRQQST--FLASMDSIGYDSALTHVE-IDSAFAKDTRKRLRELQDKVSTAVSLERAIDQAQKQRRTKEGSRTLQTILTAAAFPLDG 344
            LRG GRT+SRVVTIQPAEPTAPVDWRQQST  FLASMDS+GYD+AL H+E I S FAKDTRKRLR L+DKVSTAVSLERAI+QAQKQRRTKE SRTLQ+ILTAAAFP+DG
Sbjct:    3 LRGVGRTQSRVVTIQPAEPTAPVDWRQQSTETFLASMDSMGYDNALKHLEKIGSTFAKDTRKRLRGLEDKVSTAVSLERAIEQAQKQRRTKERSRTLQSILTAAAFPVDG 112

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BLAST of mRNA_Ecto-sp13_S_contig19024.6039.1 vs. uniprot
Match: A0A6H5JQZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ3_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 4.410e-41
Identity = 81/116 (69.83%), Postives = 95/116 (81.90%), Query Frame = 3

Query:    3 ADPVMATLRGGGRTRSRVVTIQPAEPTAPVDWRQQST--FLASMDSIGYDSALTHVE-IDSAFAKDTRKRLRELQDKVSTAVSLERAIDQAQKQRRTKEGSRTLQTILTAAAFPLD 341
            ADPVMA  RG GRTR  V   +PAEPTAP DWRQQST  F+ASMDS+GY+ AL H+E   S FAK+TR R+REL+ KVSTAVSLERA++QAQ+QRRTKEGS T QTILTAA++P+D
Sbjct:   85 ADPVMAAFRGCGRTRYGVTISEPAEPTAPADWRQQSTETFVASMDSMGYNKALHHLEGTGSKFAKETRVRVRELEAKVSTAVSLERALEQAQRQRRTKEGSHTFQTILTAASYPVD 200

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BLAST of mRNA_Ecto-sp13_S_contig19024.6039.1 vs. uniprot
Match: A0A6H5KHT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT7_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 7.990e-41
Identity = 85/116 (73.28%), Postives = 95/116 (81.90%), Query Frame = 3

Query:    3 ADPVMATLRGGGRTRSRVVTIQPAEPTAPVDWRQQST--FLASMDSIGYDSALTHVE-IDSAFAKDTRKRLRELQDKVSTAVSLERAIDQAQKQRRTKEGSRTLQTILTAAAFPLD 341
            AD  MA LRG GRTRS     +PAEPTAP DWRQQST  F+ASMDS+GYD AL H+E   S FAK+TR RLREL+ KVSTAVSLERA++QAQ+QRRTKEGSRT QTILTAAAFP+D
Sbjct:  119 ADLFMAALRGCGRTRSGSTISEPAEPTAPADWRQQSTETFIASMDSMGYDKALHHLEGTGSKFAKETRVRLRELEAKVSTAVSLERALEQAQRQRRTKEGSRTFQTILTAAAFPVD 234

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BLAST of mRNA_Ecto-sp13_S_contig19024.6039.1 vs. uniprot
Match: A0A6H5KCJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ5_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.450e-40
Identity = 84/117 (71.79%), Postives = 95/117 (81.20%), Query Frame = 3

Query:    3 ADPVMATLRGGGRTRSRVVTIQPAEP-TAPVDWRQQST--FLASMDSIGYDSALTHVE-IDSAFAKDTRKRLRELQDKVSTAVSLERAIDQAQKQRRTKEGSRTLQTILTAAAFPLD 341
            ADPV+  LRGGGRTRSRV T +PAE  TAPV+WRQ +T  FLASMDS+GY++AL H+E I S FAKDT  RLREL+ K STAVSLER I+QAQ QRRT EG  TLQTILTAAAFP+D
Sbjct:   53 ADPVITALRGGGRTRSRVQTSEPAEQETAPVNWRQHATETFLASMDSMGYENALLHLEKIGSTFAKDTLVRLRELEAKASTAVSLERVIEQAQMQRRTIEGRHTLQTILTAAAFPVD 169

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BLAST of mRNA_Ecto-sp13_S_contig19024.6039.1 vs. uniprot
Match: A0A6H5KI10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI10_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.310e-34
Identity = 79/117 (67.52%), Postives = 92/117 (78.63%), Query Frame = 3

Query:    3 ADPVMATLRGGGRTRSRVVTIQPAEP-TAPVDWRQQST--FLASMDSIGYDSALTHVE-IDSAFAKDTRKRLRELQDKVSTAVSLERAIDQAQKQRRTKEGSRTLQTILTAAAFPLD 341
            ADPV+  LRGGGRTRSRV T +P E  T PV+WRQ +T  FLASMDS+G+++AL H++ I S FAKDT  RLREL+ K STAVSLERAI+QA KQ RT EG  TLQTILTAAAF +D
Sbjct:   95 ADPVITALRGGGRTRSRVQTSEPVEQETEPVNWRQHATETFLASMDSMGHENALRHLKKIGSTFAKDTLVRLRELEAKASTAVSLERAIEQAPKQPRTTEGRHTLQTILTAAAFRVD 211

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BLAST of mRNA_Ecto-sp13_S_contig19024.6039.1 vs. uniprot
Match: D7FQY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY8_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 7.160e-32
Identity = 63/77 (81.82%), Postives = 68/77 (88.31%), Query Frame = 3

Query:    3 ADPVMATLRGGGRTRSRVVTIQPAEPTAPVDWRQQST--FLASMDSIGYDSALTHVE-IDSAFAKDTRKRLRELQDK 224
            ADPV+  LR GGRTRSRVVTIQPAEPTAPVDWRQQST  FLASMDS+GYD+AL H+E I S FAKDTRKRLREL+DK
Sbjct:   75 ADPVIMALRSGGRTRSRVVTIQPAEPTAPVDWRQQSTETFLASMDSMGYDNALKHLEEIGSTFAKDTRKRLRELEDK 151

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BLAST of mRNA_Ecto-sp13_S_contig19024.6039.1 vs. uniprot
Match: A0A6H5KNU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU1_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 4.260e-31
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 3

Query:   24 LRGGGRTRSRVVTIQPAEPTAPVDWRQQST--FLASMDSIGYDSALTHVE-IDSAFAKDTRKRLRELQDKVSTAVS 242
            LRG GRTRSRVVTIQPAEPTAPVDWRQQST  FLASMDS GYD+AL H+E I S FAKDTRKRLR L+DKV+TAVS
Sbjct:    3 LRGVGRTRSRVVTIQPAEPTAPVDWRQQSTETFLASMDSTGYDNALKHLEKIGSTFAKDTRKRLRGLEDKVNTAVS 78

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig19024.6039.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig19024.6039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19


Match Name	E-value	Identity	Description
A0A6H5LEY9_9PHAE	1.660e-51	85.47	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K847_9PHAE	9.800e-51	82.05	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JA27_9PHAE	3.220e-48	83.64	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J7C0_9PHAE	5.270e-47	84.55	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JQZ3_9PHAE	4.410e-41	69.83	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KHT7_9PHAE	7.990e-41	73.28	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCJ5_9PHAE	1.450e-40	71.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KI10_9PHAE	1.310e-34	67.52	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FQY8_ECTSI	7.160e-32	81.82	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KNU1_9PHAE	4.260e-31	82.89	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig19024	contig	Ecto-sp13_S_contig19024:1806..2495 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	346
Hectar predicted targeting category	other localisation
Exons	2
Cds size	330

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462970.5160296-UTR-Ecto-sp13_S_contig19024:1805..1819	1681462970.5160296-UTR-Ecto-sp13_S_contig19024:1805..1819	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig19024 1806..1819 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462970.5246618-CDS-Ecto-sp13_S_contig19024:1819..1885	1681462970.5246618-CDS-Ecto-sp13_S_contig19024:1819..1885	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig19024 1820..1885 +
1681462970.5334568-CDS-Ecto-sp13_S_contig19024:2231..2495	1681462970.5334568-CDS-Ecto-sp13_S_contig19024:2231..2495	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig19024 2232..2495 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig19024.6039.1	prot_Ecto-sp13_S_contig19024.6039.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig19024 1820..2495 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig19024:1806..2495+
coding sequence from alignment at Ecto-sp13_S_contig19024:1806..2495+

protein sequence of mRNA_Ecto-sp13_S_contig19024.6039.1

>prot_Ecto-sp13_S_contig19024.6039.1 ID=prot_Ecto-sp13_S_contig19024.6039.1|Name=mRNA_Ecto-sp13_S_contig19024.6039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
MATLRGGGRTRSRVVTIQPAEPTAPVDWRQQSTFLASMDSIGYDSALTHV
EIDSAFAKDTRKRLRELQDKVSTAVSLERAIDQAQKQRRTKEGSRTLQTI
LTAAAFPLDG

mRNA from alignment at Ecto-sp13_S_contig19024:1806..2495+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig19024.6039.1 ID=mRNA_Ecto-sp13_S_contig19024.6039.1|Name=mRNA_Ecto-sp13_S_contig19024.6039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19024:1806..2495+ (Ectocarpus species13 EcNAP12_S_4_19m)
TAGCAGACCCCGTCATGGCGACTTTGCGAGGAGGTGGCAGGACCCGATCC
AGGGTGGTGACAATTCAGCCAGCTGAGCCGGTGAGATGCTAATGTAGGTA
GAGATTTCAGTCAATCAACAGCACCGCAGATAAGTTTGTTTTTTGCGAGG
TCCACTTACAATGCACCATCAATCAAAACCGCGGTAATTTCGCCGAGACA
TGAATAATTGCGCCGAGGGGGTTTTAATTCCACCGAGAGGGTCGAGTTGC
ATGAAACATCGCGTAGTTGTACAGCGAGAGCTCGTCTGTGTCAGCTCCCG
CAGAAACTAAGCGCCCAATCTTGTGTGTGTAAATAGTCTCCCCATCAGTC
GTGCGTTGCGCTTATGTATAATTGCGTTGCGCAACGTCGTACCCCCCGCC
TCCTCGTTCGTCATGTGTGCACACAGACGGCGCCGGTCGACTGGCGCCAG
CAGTCTACGTTTCTCGCGTCCATGGACAGCATAGGGTATGACAGCGCGCT
GACGCACGTGGAAATCGACTCGGCGTTTGCGAAGGACACCCGTAAACGCT
TGCGAGAGTTGCAAGACAAGGTCAGCACAGCAGTCTCGTTGGAGCGAGCA
ATCGATCAGGCTCAAAAGCAACGTAGAACCAAGGAGGGAAGCCGCACGTT
GCAAACGATCCTCACCGCTGCGGCCTTTCCTCTGGACGGC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19024:1806..2495+

>mRNA_Ecto-sp13_S_contig19024.6039.1 ID=mRNA_Ecto-sp13_S_contig19024.6039.1|Name=mRNA_Ecto-sp13_S_contig19024.6039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19024:1806..2495+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGACTTTGCGAGGAGGTGGCAGGACCCGATCCAGGGTGGTGACAAT
TCAGCCAGCTGAGCCGACGGCGCCGGTCGACTGGCGCCAGCAGTCTACGT
TTCTCGCGTCCATGGACAGCATAGGGTATGACAGCGCGCTGACGCACGTG
GAAATCGACTCGGCGTTTGCGAAGGACACCCGTAAACGCTTGCGAGAGTT
GCAAGACAAGGTCAGCACAGCAGTCTCGTTGGAGCGAGCAATCGATCAGG
CTCAAAAGCAACGTAGAACCAAGGAGGGAAGCCGCACGTTGCAAACGATC
CTCACCGCTGCGGCCTTTCCTCTGGACGGC