mRNA_Ecto-sp13_S_contig19019.6037.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19019.6037.1
Unique NamemRNA_Ecto-sp13_S_contig19019.6037.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19019.6037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19019contigEcto-sp13_S_contig19019:1524..2236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size713
Hectar predicted targeting categoryother localisation
Exons1
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462970.4314456-UTR-Ecto-sp13_S_contig19019:1523..18641681462970.4314456-UTR-Ecto-sp13_S_contig19019:1523..1864Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19019 1524..1864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462970.4421728-CDS-Ecto-sp13_S_contig19019:1864..22361681462970.4421728-CDS-Ecto-sp13_S_contig19019:1864..2236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19019 1865..2236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19019.6037.1prot_Ecto-sp13_S_contig19019.6037.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19019 1865..2236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19019.6037.1

>prot_Ecto-sp13_S_contig19019.6037.1 ID=prot_Ecto-sp13_S_contig19019.6037.1|Name=mRNA_Ecto-sp13_S_contig19019.6037.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
MTSSGKVGGTSTAAGDTALFRPTQSFGGTEGDPPSVMHNLKGRKWTALGD
GSTAAASSELHAGRVDGGSGRPVRSHRRRGEGRGNNPDSASRAPPPPTFP
PPHLARRSAQREAEPMGRCDTHF*
back to top

mRNA from alignment at Ecto-sp13_S_contig19019:1524..2236+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19019.6037.1 ID=mRNA_Ecto-sp13_S_contig19019.6037.1|Name=mRNA_Ecto-sp13_S_contig19019.6037.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=713bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19019:1524..2236+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCAAAGTCGAACCGGCCACAAGGCTGCTGTCCTACTCGCTCGTTAGAG
GTTGTCGGGCGCGCATTTTGCCCCGAAGAGATACGTACAACAGTAGCGGC
TTCCGTGACGCAGTTCGTGCCGGTGTTTGAGAGTCTCTCATGGTCACAAC
CCAGCAACGAACGAGTGGGCAACGAGACCCACACAGGCGACGAACCAAGC
ACGTTTAAGTCTTGCAGCACGATAGAGACCACAACCAAGGAAGGGAGAAG
GAGCCTTGAATCGCTCGCCAATGCAGGACCTCGCAGTCAATAGGTGTATT
GCAACCGACTAAGGTCGTGAGTTTGACCACTTGGCCCCGTCATGACGAGC
AGTGGGAAAGTCGGTGGTACCTCGACGGCGGCTGGAGACACAGCGCTCTT
TCGCCCAACCCAGAGCTTTGGCGGTACCGAAGGTGATCCTCCATCTGTAA
TGCATAACCTCAAAGGTCGGAAATGGACCGCATTGGGCGACGGTAGCACG
GCAGCAGCTTCGTCTGAACTCCACGCTGGCCGTGTCGACGGAGGTAGCGG
CCGGCCGGTAAGGTCCCACCGACGGCGAGGCGAGGGGAGAGGGAACAATC
CTGATTCAGCGAGCCGTGCACCACCCCCTCCTACTTTCCCTCCGCCGCAC
CTTGCCCGAAGATCGGCGCAACGAGAGGCGGAGCCGATGGGGAGGTGTGA
TACGCATTTTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19019:1524..2236+

>mRNA_Ecto-sp13_S_contig19019.6037.1 ID=mRNA_Ecto-sp13_S_contig19019.6037.1|Name=mRNA_Ecto-sp13_S_contig19019.6037.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19019:1524..2236+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGCAGTGGGAAAGTCGGTGGTACCTCGACGGCGGCTGGAGACAC
AGCGCTCTTTCGCCCAACCCAGAGCTTTGGCGGTACCGAAGGTGATCCTC
CATCTGTAATGCATAACCTCAAAGGTCGGAAATGGACCGCATTGGGCGAC
GGTAGCACGGCAGCAGCTTCGTCTGAACTCCACGCTGGCCGTGTCGACGG
AGGTAGCGGCCGGCCGGTAAGGTCCCACCGACGGCGAGGCGAGGGGAGAG
GGAACAATCCTGATTCAGCGAGCCGTGCACCACCCCCTCCTACTTTCCCT
CCGCCGCACCTTGCCCGAAGATCGGCGCAACGAGAGGCGGAGCCGATGGG
GAGGTGTGATACGCATTTTTGA
back to top