mRNA_Ecto-sp13_S_contig19017.6036.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19017.6036.1
Unique NamemRNA_Ecto-sp13_S_contig19017.6036.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19017.6036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19017contigEcto-sp13_S_contig19017:643..2824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size734
Hectar predicted targeting categoryother localisation
Exons2
Cds size483
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462970.3683748-UTR-Ecto-sp13_S_contig19017:642..8931681462970.3683748-UTR-Ecto-sp13_S_contig19017:642..893Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19017 643..893 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462970.3788605-CDS-Ecto-sp13_S_contig19017:893..12411681462970.3788605-CDS-Ecto-sp13_S_contig19017:893..1241Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19017 894..1241 -
1681462970.3890994-CDS-Ecto-sp13_S_contig19017:2689..28241681462970.3890994-CDS-Ecto-sp13_S_contig19017:2689..2824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19017 2690..2824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19017.6036.1prot_Ecto-sp13_S_contig19017.6036.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19017 894..2824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19017.6036.1

>prot_Ecto-sp13_S_contig19017.6036.1 ID=prot_Ecto-sp13_S_contig19017.6036.1|Name=mRNA_Ecto-sp13_S_contig19017.6036.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
SFEGGTTRTLKGSSIESGNVIYQKLTEGAKLLGHVAAPGHEDKRKVFAKY
LATLPTFSQIGEPRVTAVSETSTKDLVVYSERLSGSRFFCKLANCVAARE
QRLENEEEPKDSSRSAKGASSTTKKKRRISAKPEDTPAPRSRDSAGSAAN
GDDEKGRGSG*
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mRNA from alignment at Ecto-sp13_S_contig19017:643..2824-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19017.6036.1 ID=mRNA_Ecto-sp13_S_contig19017.6036.1|Name=mRNA_Ecto-sp13_S_contig19017.6036.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19017:643..2824- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTTTCGAAGGAGGAACTACGAGGACCCTCAAGGGGTCATCAATCGAGAG
CGGGAATGTGATCTACCAGAAGCTAACCGAAGGGGCAAAACTTCTTGGGC
ATGTTGCCGCCCCCGGCCATGAGGATAAACGCAAGGTAACACGGACCGAC
CATTCTCGTCGAGAGAGAGACACATGCACACAACGCTTTGCGTTTGCGAG
TTGGTTGGGCTGTGTCGCAACGGCCTTCGCGTAGAATCGAAGCCGGCAAA
CGGTGGATGTATCTGCCTTGATCACTCGCGACCACCTGGAACCAACGGAA
GCAAGCAAGTTTGATCGTCCGTTCTTGAACCCTTGCATTTCGGGGAAATT
CGGGGAAACTGTGGTATTAGTATGCTTTTCGGCAGCACAACGATCTTAAC
GAAATGACGACGAGAGTTGGTGAAAGCCTCGCGAAAGTGTCACCTCGCGG
ACGCCATGACGCATGTGCAAGAAGGCCTTTAAGAGTAGGGGTTCTCAAGC
TGGTCTATTGAGTGTTCTTCACCACCTCTACGCAAGGTCGGTTTAGTGTG
TGTTCGTGTGTTCGTGTGACATGGCAGCCGTCGCACCAAAGCATGTCGAT
GCCGGAGTACACGCTTGCCTCCATGCGTATACGCTGAAATACCTTTTGAT
TCAATCGGTGATGCAGAGGTATATACGATCGCTTCAGGTTGTGCGTGTCG
TGTCCATGTTTGGACCAGGAGCCGTACCCCCACCACAATATCCTCTGTGT
GTGCGATATCCTCCTGTCTCCAGACATGAACCCAAATGATGCAAAAATCA
CTTTGACCCCTCCCCCCCCCCAGCTCTTTTCGCGTTGTGCAAGGACCCCT
CCCCCTTATTTCTTTTTTTGCCCCGCGCGTATCTTGAGAAAAAAAGTAAT
GTTCCTCCACCAACGACTATTGCACAGCAGTCGAGTTGCTTGTTCGTTGG
TCCCACACCGGTATACAATGGTAAGCTCCTGGGACCACAGGTGTCAGGCC
AGGACTCCTCCCTTGCAGCTGCCACCAGTCGCGCTCTCGCCGGTTTTGAA
GAGCGTCTCCAAGTGTCACGGCGGGGTGTGCTAGTGTGTAGATGCTATCT
TTCCCTCTGTGCGTGTGTGTTTTGCTTGTATCCATAACCGCCGCCTATGC
TTGCTTGCCCTGCCCGGGCTGTTGAGAAACCTATTTCTCTGAGGTGCTTC
ATCTCTACTCCGTGTTTTTTTTCTCAAAGACCTTGGAGCGCCGGGCCGGG
TGGGGCAAGCACCGATGATACTGCGGTCAGGAGAACGTTTAGGGTATGAA
GGGATCGGATGTATCCGAGAGAACGGCAATTTAAACTCGAAGAAAGCTCA
ATCACATGTCCTCGCATTTGTTTTCTCTTACACCAGCCGCTGCACGCGGT
TCTTCGATGACTCATACCACCACCAACTATTTGCAATGTGCCCGAAAGCA
GCGTTGTGTCCCGTTTGCGTGTGCTTCCCGGAAGGGGGAAGCGGTTTGGC
AAGCATTTTGTTTTATTATCCAGTGTATTCAACTTAACGTCCGCGCACGC
CCATCTTCTGCTGTGTCTCTGCTCTTTTCGAAGGTGTTCGCGAAGTACCT
AGCTACGTTACCCACGTTCTCGCAGATCGGTGAACCGCGGGTGACGGCTG
TTTCGGAGACCTCGACCAAAGACTTGGTCGTTTACTCTGAGCGACTCTCG
GGGTCTCGGTTCTTCTGCAAGTTGGCCAACTGCGTGGCGGCGCGCGAGCA
GCGGCTAGAGAATGAGGAGGAACCCAAAGACTCGTCTCGTTCGGCCAAGG
GGGCATCGAGCACTACGAAAAAAAAGCGGCGGATCTCGGCGAAACCCGAG
GATACTCCGGCTCCCCGCAGCCGCGATAGCGCCGGCTCGGCGGCGAACGG
TGATGACGAAAAGGGCAGGGGGAGTGGGTGATCACACGGCGCAGCCTGAG
CGCGGCGGGCAACCGAACGCGAAGCAAAGCGATGCCGTTGGTGGCGTCTG
CAATGAACGGTGGCTGGGATGACCGCTGAATGGCCGTCGGCCATTGTTCC
TCCTCGGTGCCTCCGGCCGTTGGTTGTGGTGTTGCTCTCTGGCCACGTCC
TTTGTGGAGCCTGCCGTGCTTCGGTGGCAAGTTTGTGTTGTTGTCTACGT
GCGTGCTGTGCTGGTGAGGCGACTCATTGCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19017:643..2824-

>mRNA_Ecto-sp13_S_contig19017.6036.1 ID=mRNA_Ecto-sp13_S_contig19017.6036.1|Name=mRNA_Ecto-sp13_S_contig19017.6036.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19017:643..2824- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTTTCGAAGGAGGAACTACGAGGACCCTCAAGGGGTCATCAATCGAGAG
CGGGAATGTGATCTACCAGAAGCTAACCGAAGGGGCAAAACTTCTTGGGC
ATGTTGCCGCCCCCGGCCATGAGGATAAACGCAAGGTGTTCGCGAAGTAC
CTAGCTACGTTACCCACGTTCTCGCAGATCGGTGAACCGCGGGTGACGGC
TGTTTCGGAGACCTCGACCAAAGACTTGGTCGTTTACTCTGAGCGACTCT
CGGGGTCTCGGTTCTTCTGCAAGTTGGCCAACTGCGTGGCGGCGCGCGAG
CAGCGGCTAGAGAATGAGGAGGAACCCAAAGACTCGTCTCGTTCGGCCAA
GGGGGCATCGAGCACTACGAAAAAAAAGCGGCGGATCTCGGCGAAACCCG
AGGATACTCCGGCTCCCCGCAGCCGCGATAGCGCCGGCTCGGCGGCGAAC
GGTGATGACGAAAAGGGCAGGGGGAGTGGGTGA
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