mRNA_Ecto-sp13_S_contig19006.6031.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19006.6031.1
Unique NamemRNA_Ecto-sp13_S_contig19006.6031.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19006.6031.1 vs. uniprot
Match: A0A6H5KWS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS7_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 1.510e-75
Identity = 164/206 (79.61%), Postives = 168/206 (81.55%), Query Frame = -2 
Query:  171 SAGRVVTVDVYRQPPSEDTVPSTRGRDKDGRRLDGGGSSRRTHHAPAGGAKWSERTSSGPLVEIMMSSPSVSPTSSRSPGKRASTPAAXXXXXXXXXXASAPLGLPPPPMEGVKVGPSEWSWDAPEKGAEGGGGAAGVDGRSRAGRGGRDPSXXXXXXAASS------VAPNSLMIATDSLGNVRIYAKQALLKALKRSVFSASSR 770
            SAGRVVTVDVYRQPPSEDT PSTRGRDKDGRRLDGGGSSRRTHHAPAGGA+WSERTSSGPLVEIMMSSPSVSPT+SRSPGKRASTP+A XXXXX    ASAPLGLPPPPMEG+KVGPSEWSWDA EKGAEG                     XXXXXX          VAPNSLMIATDSLGNVRIYAKQALLKALKRSVFSASSR
Sbjct: 1916 SAGRVVTVDVYRQPPSEDTAPSTRGRDKDGRRLDGGGSSRRTHHAPAGGARWSERTSSGPLVEIMMSSPSVSPTASRSPGKRASTPSAAXXXXXPG--ASAPLGLPPPPMEGIKVGPSEWSWDASEKGAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPNSLMIATDSLGNVRIYAKQALLKALKRSVFSASSR 2119
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BLAST of mRNA_Ecto-sp13_S_contig19006.6031.1 vs. uniprot
Match: D8LMN8_ECTSI (WD repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN8_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 7.190e-46
Identity = 115/134 (85.82%), Postives = 118/134 (88.06%), Query Frame = -2 
Query:  507 YDPSARWGWEKEDDSGSRRLAARXXXXXXXXXXXXXXXXXX-----SAGRVVTVDVYRQPPSEDTVPSTRGRDKDGRRLDGGGSSRRTHHAPAGGAKWSERTSSGPLVEIMMSSPSVSPTSSRSPGKRASTPAA 893
            YDP+ARWGWEKED          XXXXXXXXXXXXXXXXXX     SAGRVVTVDVYRQPPSEDT PSTRGRDK+GRRLDGGGSSRRTHHAPAGGAKWSERTSSGPLVEIMMSSPSVSPTSSRSPGKRASTP+A
Sbjct: 1392 YDPNARWGWEKEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGRVVTVDVYRQPPSEDTAPSTRGRDKEGRRLDGGGSSRRTHHAPAGGAKWSERTSSGPLVEIMMSSPSVSPTSSRSPGKRASTPSA 1525
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19006.6031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWS7_9PHAE1.510e-7579.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMN8_ECTSI7.190e-4685.82WD repeat protein (Partial) (Fragment) n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19006contigEcto-sp13_S_contig19006:1531..2424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size894
Hectar predicted targeting categorysignal peptide
Exons1
Cds size663
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462970.0596812-UTR-Ecto-sp13_S_contig19006:1530..17611681462970.0596812-UTR-Ecto-sp13_S_contig19006:1530..1761Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19006 1531..1761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462970.0717454-CDS-Ecto-sp13_S_contig19006:1761..24241681462970.0717454-CDS-Ecto-sp13_S_contig19006:1761..2424Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19006 1762..2424 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19006.6031.1prot_Ecto-sp13_S_contig19006.6031.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19006 1762..2424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19006.6031.1

>prot_Ecto-sp13_S_contig19006.6031.1 ID=prot_Ecto-sp13_S_contig19006.6031.1|Name=mRNA_Ecto-sp13_S_contig19006.6031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=221bp
MRTFPRLSVAIIRLFGATELAAAAVDDEEGSLPPRPALDLPSTPAAPPPP
SAPFSGASHDHSEGPTLTPSIGGGGNPSGADAPGPAAAATAAAAGVEALL
PGDLEDVGDTEGEDIMISTRGPEEVRSLHLAPPAGAWWVRRLLPPPSNRR
PSLSLPLVEGTVSSDGGCRYTSTVTTRPAEAPSPSPPPPLLRPFPPRARA
ARRLDPLSSSFSQPHRALGS*
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mRNA from alignment at Ecto-sp13_S_contig19006:1531..2424+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19006.6031.1 ID=mRNA_Ecto-sp13_S_contig19006.6031.1|Name=mRNA_Ecto-sp13_S_contig19006.6031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=894bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19006:1531..2424+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGGGGGGGGGGGGGGGAGCCCAAACACAAGGGGGAAAAAACATATCG
TATAACTAGACAAACAAACTACACCCCGGGAATTCATATATTTGCGAAAA
ACCTCTACTTGTCTCCATGTCTCGACAACAGAAAGAGCGGTGGATGTTCC
TGTGGCGTCAATCAACATCATCTCGACGACGCCGAAAACACGGATCGCTT
GAGGGCCTTAAGGAGAGCTTGCTTGGCGTAGATGCGGACGTTCCCCAGGC
TGTCCGTAGCGATCATAAGGCTGTTCGGCGCGACGGAACTCGCCGCCGCC
GCTGTAGACGACGAAGAGGGATCCCTCCCGCCACGGCCGGCTCTGGACCT
CCCATCGACCCCCGCTGCACCCCCGCCGCCTTCAGCTCCCTTCTCCGGCG
CGTCCCACGACCACTCCGAGGGGCCAACCTTGACGCCCTCCATCGGCGGC
GGCGGCAACCCGAGTGGCGCGGATGCCCCCGGTCCCGCCGCCGCCGCCAC
CGCCGCCGCCGCAGGCGTCGAGGCCCTCTTACCCGGAGATCTGGAAGACG
TCGGGGACACCGAGGGCGAAGACATCATGATCTCTACCAGGGGCCCTGAG
GAGGTCCGCTCGCTCCACTTGGCTCCGCCCGCGGGGGCGTGGTGGGTACG
CCGACTGCTGCCCCCGCCGTCCAACCGCCGGCCGTCCTTATCCCTCCCCC
TCGTTGAAGGCACCGTGTCCTCGGACGGGGGCTGCCGGTACACGTCCACG
GTAACGACGCGGCCCGCGGAAGCTCCTTCTCCCTCGCCGCCGCCGCCGTT
GCTACGCCCTTTCCCGCCGCGCGCGCGGGCCGCCAGGCGCCTCGACCCGC
TGTCGTCCTCCTTCTCCCAGCCCCACCGGGCACTAGGGTCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19006:1531..2424+

>mRNA_Ecto-sp13_S_contig19006.6031.1 ID=mRNA_Ecto-sp13_S_contig19006.6031.1|Name=mRNA_Ecto-sp13_S_contig19006.6031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19006:1531..2424+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGACGTTCCCCAGGCTGTCCGTAGCGATCATAAGGCTGTTCGGCGC
GACGGAACTCGCCGCCGCCGCTGTAGACGACGAAGAGGGATCCCTCCCGC
CACGGCCGGCTCTGGACCTCCCATCGACCCCCGCTGCACCCCCGCCGCCT
TCAGCTCCCTTCTCCGGCGCGTCCCACGACCACTCCGAGGGGCCAACCTT
GACGCCCTCCATCGGCGGCGGCGGCAACCCGAGTGGCGCGGATGCCCCCG
GTCCCGCCGCCGCCGCCACCGCCGCCGCCGCAGGCGTCGAGGCCCTCTTA
CCCGGAGATCTGGAAGACGTCGGGGACACCGAGGGCGAAGACATCATGAT
CTCTACCAGGGGCCCTGAGGAGGTCCGCTCGCTCCACTTGGCTCCGCCCG
CGGGGGCGTGGTGGGTACGCCGACTGCTGCCCCCGCCGTCCAACCGCCGG
CCGTCCTTATCCCTCCCCCTCGTTGAAGGCACCGTGTCCTCGGACGGGGG
CTGCCGGTACACGTCCACGGTAACGACGCGGCCCGCGGAAGCTCCTTCTC
CCTCGCCGCCGCCGCCGTTGCTACGCCCTTTCCCGCCGCGCGCGCGGGCC
GCCAGGCGCCTCGACCCGCTGTCGTCCTCCTTCTCCCAGCCCCACCGGGC
ACTAGGGTCGTAG
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