mRNA_Ecto-sp13_S_contig18989.6017.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18989.6017.1
Unique NamemRNA_Ecto-sp13_S_contig18989.6017.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18989.6017.1 vs. uniprot
Match: D8LI54_ECTSI (USP domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI54_ECTSI)

HSP 1 Score: 252 bits (643), Expect = 6.860e-75
Identity = 132/171 (77.19%), Postives = 133/171 (77.78%), Query Frame = 1 
Query:    1 QFRSALYEWKHGPQSSSGGTADE----------------------------DPSECIPLQLQKLFGQLQLSDETCVETRALTDSFGWTAQASASLSWRGRDSFQQHDVQELCRVLFDALESTFQGTVNEKLVNNLYQGSLRDYVTCKECHSESSRLDNFLDISLVLRPFGS 429
            +FRSALYEWKHGPQSSSGGTADE                            DPSECIPLQLQKLFGQLQLSDETCVETRALTDSFGWTAQ          DSFQQHDVQELCRVLFDALESTFQGTVNEKLVNNLYQGSLRDYVTCKECHSESSRLDNFLDISLVLRPFGS
Sbjct:  109 EFRSALYEWKHGPQSSSGGTADEGSASAPTRPVVGGDKGQVKQEEEEEEVEDPSECIPLQLQKLFGQLQLSDETCVETRALTDSFGWTAQ----------DSFQQHDVQELCRVLFDALESTFQGTVNEKLVNNLYQGSLRDYVTCKECHSESSRLDNFLDISLVLRPFGS 269
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18989.6017.1 vs. uniprot
Match: K3WU38_GLOUD (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WU38_GLOUD)

HSP 1 Score: 162 bits (409), Expect = 7.090e-44
Identity = 88/168 (52.38%), Postives = 106/168 (63.10%), Query Frame = 1 
Query:    1 QFRSALYEWKHGP------QSSSGGTA------------------DEDPSEC-IPLQLQKLFGQLQLSDETCVETRALTDSFGWTAQASASLSWRGRDSFQQHDVQELCRVLFDALESTFQGTVNEKLVNNLYQGSLRDYVTCKECHSESSRLDNFLDISLVLRPFGS 429
            +FR  LY+W+ G       QS    +A                  D++P E  IP QLQKLF +LQ+S    + T+ALT SFGWT          G D FQQHDVQELCRVLFDA+E +F+GTVNE LVN+LYQGSL+DYV C  C  ESSR+DNFLD+SLV+RPFGS
Sbjct:   65 EFRKGLYQWQFGQKTKKTKQSEESDSAAPDNDATDGXXXXXXEVGDDEPEEYNIPFQLQKLFAKLQMSSHESISTKALTKSFGWT----------GADVFQQHDVQELCRVLFDAIEKSFKGTVNETLVNDLYQGSLKDYVQCHTCGHESSRIDNFLDLSLVIRPFGS 222
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18989.6017.1 vs. uniprot
Match: G4YL70_PHYSP (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YL70_PHYSP)

HSP 1 Score: 159 bits (403), Expect = 7.360e-44
Identity = 87/148 (58.78%), Postives = 101/148 (68.24%), Query Frame = 1 
Query:    1 QFRSALYEWK-HGPQSSSGGT----ADEDPSECIPLQLQKLFGQLQLSDETCVETRALTDSFGWTAQASASLSWRGRDSFQQHDVQELCRVLFDALESTFQGTVNEKLVNNLYQGSLRDYVTCKECHSESSRLDNFLDISLVLRPFGS 429
            +FR  LY W  H     +       ADED    IPLQLQ LF +LQL+ +  + T+ALT SFGWT          G D FQQHDVQELCRVL DALE +F+GTVNE LVN+LYQGSL+DYV C EC  ESSR+DNFLD+SLV+RPFGS
Sbjct:  126 EFRQGLYNWTCHRAAKKADDXXXXXADEDN---IPLQLQNLFAKLQLTTQDSISTKALTKSFGWT----------GADVFQQHDVQELCRVLLDALERSFKGTVNETLVNDLYQGSLKDYVQCCECGYESSRIDNFLDLSLVIRPFGS 260
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18989.6017.1 vs. uniprot
Match: A0A833RZV0_PHYIN (Ubiquitin carboxyl-terminal hydrolase domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833RZV0_PHYIN)

HSP 1 Score: 155 bits (391), Expect = 7.490e-44
Identity = 87/157 (55.41%), Postives = 101/157 (64.33%), Query Frame = 1 
Query:    1 QFRSALYEW------KHGPQSSSGGT--------ADEDPSECIPLQLQKLFGQLQLSDETCVETRALTDSFGWTAQASASLSWRGRDSFQQHDVQELCRVLFDALESTFQGTVNEKLVNNLYQGSLRDYVTCKECHSESSRLDNFLDISLVLRPFGS 429
            +FR  LY W      K   QS             ADED    IPLQLQ LF +LQL+ +  + T+ALT SFGWT          G D FQQHDVQELCRVL DALE +F+ TVNE LVN+LYQGSL+DYV C +C  ESSR+DNFLD+SLV+RPFGS
Sbjct:  111 EFRQGLYNWTSHRAVKTMEQSEEXXXXXXXXXXXADEDN---IPLQLQNLFAKLQLTTQDSISTKALTKSFGWT----------GADVFQQHDVQELCRVLLDALEKSFKDTVNENLVNDLYQGSLKDYVQCCQCKYESSRIDNFLDLSLVIRPFGS 254
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18989.6017.1 vs. uniprot
Match: A0A0P1AC97_PLAHL (Ubiquitin carboxyl-terminal hydrolase 47-like isoform x1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AC97_PLAHL)

HSP 1 Score: 162 bits (411), Expect = 1.140e-43
Identity = 87/156 (55.77%), Postives = 102/156 (65.38%), Query Frame = 1 
Query:    1 QFRSALYEWK-----HGPQSSSGGTADEDPSEC--------IPLQLQKLFGQLQLSDETCVETRALTDSFGWTAQASASLSWRGRDSFQQHDVQELCRVLFDALESTFQGTVNEKLVNNLYQGSLRDYVTCKECHSESSRLDNFLDISLVLRPFGS 429
            +FR  LY W      H          DE+ S+         IPLQLQKLF +LQL+ +  + T+ALT SFGWT          G D FQQHDVQELCRVL DALE +F+GTVNE LVN+LYQGSL+DYV C EC  ESSR+DNFLD+SLV+RPFGS
Sbjct:  124 EFRQGLYNWTCHRVIHEINQDIAQKDDEEESDVEIEADEDNIPLQLQKLFAKLQLTTQDSISTKALTKSFGWT----------GADVFQQHDVQELCRVLLDALEKSFRGTVNESLVNDLYQGSLKDYVQCYECRYESSRIDNFLDLSLVIRPFGS 269
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18989.6017.1 vs. uniprot
Match: H3GQU9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQU9_PHYRM)

HSP 1 Score: 161 bits (407), Expect = 3.980e-43
Identity = 85/152 (55.92%), Postives = 103/152 (67.76%), Query Frame = 1 
Query:    1 QFRSALYEW--KHGPQSSSGGTADEDPS-------ECIPLQLQKLFGQLQLSDETCVETRALTDSFGWTAQASASLSWRGRDSFQQHDVQELCRVLFDALESTFQGTVNEKLVNNLYQGSLRDYVTCKECHSESSRLDNFLDISLVLRPFGS 429
            +FR  LY W  +H  + +     +ED         + IPLQLQ LF +LQL+ +  + T+ALT SFGWT          G D FQQHDVQELCRVL DALE +F+GTVNE LVN+LYQGSL+DYV C EC  ESSR+DNFLD+SLV+RPFGS
Sbjct:  246 EFRQGLYNWTCRHAAKKAELTEQEEDXXXXXXXXXDNIPLQLQNLFAKLQLTTQDSISTKALTKSFGWT----------GADVFQQHDVQELCRVLLDALEKSFKGTVNETLVNDLYQGSLKDYVQCCECGYESSRIDNFLDLSLVIRPFGS 387
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18989.6017.1 vs. uniprot
Match: A0A2P4X4M7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X4M7_9STRA)

HSP 1 Score: 160 bits (406), Expect = 5.380e-43
Identity = 86/149 (57.72%), Postives = 102/149 (68.46%), Query Frame = 1 
Query:    1 QFRSALYEW------KHGPQSSSGGTADEDPSECIPLQLQKLFGQLQLSDETCVETRALTDSFGWTAQASASLSWRGRDSFQQHDVQELCRVLFDALESTFQGTVNEKLVNNLYQGSLRDYVTCKECHSESSRLDNFLDISLVLRPFGS 429
            +FR  LY W      K   +      ADED    IPLQLQKLF +LQL+ +  + T+ALT SFGWT          G D FQQHDVQELCRVL DALE++F+ TVNE LVN+LYQG+L+DYV C EC  ESSR+DNFLD+SLV+RPFGS
Sbjct:  126 EFRQGLYNWTCQALKKVEDEDREEDEADEDN---IPLQLQKLFAKLQLTSQDSISTKALTKSFGWT----------GADVFQQHDVQELCRVLLDALENSFKDTVNENLVNDLYQGALKDYVQCCECGYESSRVDNFLDLSLVIRPFGS 261
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18989.6017.1 vs. uniprot
Match: A0A5D6Y180_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y180_9STRA)

HSP 1 Score: 158 bits (400), Expect = 3.480e-42
Identity = 80/150 (53.33%), Postives = 100/150 (66.67%), Query Frame = 1 
Query:    1 QFRSALYEWKHGPQSSSGGTADEDP-------SECIPLQLQKLFGQLQLSDETCVETRALTDSFGWTAQASASLSWRGRDSFQQHDVQELCRVLFDALESTFQGTVNEKLVNNLYQGSLRDYVTCKECHSESSRLDNFLDISLVLRPFGS 429
            +FR  LY+W+ G +  +G               + IP QLQKLF +LQ+     + T+ALT SFGWT          G D FQQHDVQELCRVLFDA+E +F+GTVNE LVN+LYQG+L+DYV C  C  ESSR+D+FLD+SLV+RPFGS
Sbjct:  147 EFRQGLYQWQFGRRDDAGDAXXXXXXXXXXSGDDNIPFQLQKLFAKLQMRTSESISTKALTKSFGWT----------GADVFQQHDVQELCRVLFDAIERSFKGTVNETLVNDLYQGALKDYVQCHACGFESSRIDHFLDLSLVIRPFGS 286
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18989.6017.1 vs. uniprot
Match: A0A225WQY2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WQY2_9STRA)

HSP 1 Score: 158 bits (399), Expect = 4.720e-42
Identity = 83/146 (56.85%), Postives = 100/146 (68.49%), Query Frame = 1 
Query:    1 QFRSALYEWK-HGPQSSSGGTADE--DPSECIPLQLQKLFGQLQLSDETCVETRALTDSFGWTAQASASLSWRGRDSFQQHDVQELCRVLFDALESTFQGTVNEKLVNNLYQGSLRDYVTCKECHSESSRLDNFLDISLVLRPFGS 429
            +FR  LY W  H  +       +E  +  E IPLQLQ LF +LQL+ +  + T+ALT SFGWT          G D FQQHDVQELCRVL DALE +F+ TVNE LVN+LYQG+L+DYV C EC  ESSR+DNFLD+SLV+RPFGS
Sbjct:  124 EFRQGLYNWTCHAAKMVDEDKEEETDEDEENIPLQLQNLFAKLQLTTQDSISTKALTKSFGWT----------GADVFQQHDVQELCRVLLDALEKSFKDTVNETLVNDLYQGALKDYVQCCECGYESSRIDNFLDLSLVIRPFGS 259
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18989.6017.1 vs. uniprot
Match: A0A3R7IH05_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IH05_9STRA)

HSP 1 Score: 158 bits (399), Expect = 4.720e-42
Identity = 88/155 (56.77%), Postives = 101/155 (65.16%), Query Frame = 1 
Query:    1 QFRSALYEWK-HGPQSSSGGTA-----------DEDPSECIPLQLQKLFGQLQLSDETCVETRALTDSFGWTAQASASLSWRGRDSFQQHDVQELCRVLFDALESTFQGTVNEKLVNNLYQGSLRDYVTCKECHSESSRLDNFLDISLVLRPFGS 429
            +FR  LY W  H     S   A           DED    IPLQLQKLFG+LQL+ +  + T+ALT SFGWT          G D FQQHDVQELCRVL DALE +F+ TVNE LVN LYQG+L+DYV C EC  ESSR+DNFLD+SLV+RPFGS
Sbjct:  109 EFRQGLYRWTCHNAIKKSKEEAKXXXXXXXXXXDEDN---IPLQLQKLFGKLQLTTQDSISTKALTKSFGWT----------GADVFQQHDVQELCRVLLDALERSFKDTVNENLVNELYQGALKDYVQCCECKYESSRIDNFLDLSLVIRPFGS 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18989.6017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI54_ECTSI6.860e-7577.19USP domain-containing protein (Fragment) n=2 Tax=E... [more]
K3WU38_GLOUD7.090e-4452.38Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Glob... [more]
G4YL70_PHYSP7.360e-4458.78Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
A0A833RZV0_PHYIN7.490e-4455.41Ubiquitin carboxyl-terminal hydrolase domain-conta... [more]
A0A0P1AC97_PLAHL1.140e-4355.77Ubiquitin carboxyl-terminal hydrolase 47-like isof... [more]
H3GQU9_PHYRM3.980e-4355.92Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A2P4X4M7_9STRA5.380e-4357.72Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A5D6Y180_9STRA3.480e-4253.33Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A225WQY2_9STRA4.720e-4256.85Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A3R7IH05_9STRA4.720e-4256.77Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18989contigEcto-sp13_S_contig18989:2111..3386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score253.4
Seed ortholog evalue6.1e-65
Seed eggNOG ortholog2880.D8LI54
Preferred nameUSP47
Model size429
KEGG koko:K11857
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000578,GO:0001558,GO:0001654,GO:0001745,GO:0003002,GO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006355,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0007346,GO:0007350,GO:0007351,GO:0007389,GO:0007423,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008595,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009790,GO:0009798,GO:0009880,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009895,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010389,GO:0010466,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010948,GO:0010951,GO:0010972,GO:0016579,GO:0016787,GO:0019005,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0019904,GO:0023051,GO:0023056,GO:0023057,GO:0030111,GO:0030154,GO:0030162,GO:0030177,GO:0030307,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031329,GO:0031330,GO:0031461,GO:0031647,GO:0031935,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034644,GO:0035282,GO:0035520,GO:0036211,GO:0036459,GO:0040008,GO:0042176,GO:0042177,GO:0042221,GO:0042493,GO:0042675,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043281,GO:0043412,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045786,GO:0045861,GO:0045892,GO:0045927,GO:0045930,GO:0045934,GO:0046483,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051336,GO:0051346,GO:0051716,GO:0051726,GO:0052547,GO:0052548,GO:0060255,GO:0060548,GO:0060828,GO:0060968,GO:0061136,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071987,GO:0080090,GO:0080134,GO:0080135,GO:0090263,GO:0090304,GO:0090596,GO:0101005,GO:0104004,GO:0140096,GO:1901360,GO:1901564,GO:1901799,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902229,GO:1902230,GO:1902275,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1902749,GO:1902750,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903507,GO:1990234,GO:2000058,GO:2000059,GO:2000112,GO:2000113,GO:2000116,GO:2000117,GO:2001020,GO:2001021,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243
Exons4
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsCOG5077@1,KOG4598@2759
EC3.4.19.12
Cds size429
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462968.7699602-CDS-Ecto-sp13_S_contig18989:2110..22111681462968.7699602-CDS-Ecto-sp13_S_contig18989:2110..2211Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18989 2111..2211 -
1681462968.786965-CDS-Ecto-sp13_S_contig18989:2583..26951681462968.786965-CDS-Ecto-sp13_S_contig18989:2583..2695Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18989 2584..2695 -
1681462968.7964401-CDS-Ecto-sp13_S_contig18989:3080..32261681462968.7964401-CDS-Ecto-sp13_S_contig18989:3080..3226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18989 3081..3226 -
1681462968.8052855-CDS-Ecto-sp13_S_contig18989:3316..33861681462968.8052855-CDS-Ecto-sp13_S_contig18989:3316..3386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18989 3317..3386 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18989.6017.1prot_Ecto-sp13_S_contig18989.6017.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18989 2111..3386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18989.6017.1

>prot_Ecto-sp13_S_contig18989.6017.1 ID=prot_Ecto-sp13_S_contig18989.6017.1|Name=mRNA_Ecto-sp13_S_contig18989.6017.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
QFRSALYEWKHGPQSSSGGTADEDPSECIPLQLQKLFGQLQLSDETCVET
RALTDSFGWTAQASASLSWRGRDSFQQHDVQELCRVLFDALESTFQGTVN
EKLVNNLYQGSLRDYVTCKECHSESSRLDNFLDISLVLRPFGS
back to top

mRNA from alignment at Ecto-sp13_S_contig18989:2111..3386-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18989.6017.1 ID=mRNA_Ecto-sp13_S_contig18989.6017.1|Name=mRNA_Ecto-sp13_S_contig18989.6017.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18989:2111..3386- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTTCGATCGGCGCTGTACGAGTGGAAGCACGGCCCGCAGTCTTCTTC
GGGGGGTACAGCAGATGAGGGTTCTTCGTCGGCACCCACCCCCCCAGTGG
CCGGAGGGGACAAGGAACAGGTGAAGGAAGAGGAGGAGGAGGAGGAGGAG
GAAGTGGAAGATCCAAGCGAGTGCATCCCGCTGCAGCTGCAGAAGCTGTT
CGGGCAGCTGCAGCTCAGCGACGAGACGTGCGTGGAGACTAGGGCGCTCA
CCGACAGCTTCGGGTGGACTGCGCAGGCGAGTGCTTCTCTCTCTTGGCGG
GGCCGCGTCGTTTTTGGGACTATGGGACGACAAGACGGGGGCAGGGGCCG
GCCGACAGTTAGCTTAAGTCGCAGCAAGATAGACTTGCAGACCTTTTGCA
CACGATTCTCAGTTGACGGTGGAGCGACACTACCTGGATACTCACTGGTC
TTCGTTTCGTCTCTACGTATGCTGCCGATCCAGCTACATGCCTTTTGCCG
CGGCCAGACTCTAATTCATTGTCTGCGAGCCCGTTTTTGGACGAGCCGGA
TACCACGACTATTCCCGGTTCGTGTGCATCGCCAATCGTCCGTATATGCT
TGACTTTTTCAGTTTGAACCACCTTGTCTTGCCTTCTGTCCGGATCGGAA
CCTTTGTCGTGGTACGCGTATCCTTTTTTTTTTTGGATCAGGACTCCTTC
CAGCAGCACGACGTGCAGGAGCTGTGCAGGGTGCTGTTCGACGCCCTCGA
AAGCACGTTCCAGGGAACGGTCAACGAAAAGCTGGTCAACAACCTCTACC
AGGGTGAGACAACGAAAGACAGACGGAGCCTTGCTGGTTACCTGTGCGGG
TAGCATAGAAGGGCGGGGTCGACTCAGCGGCGTGTGTATATTTGTCCGGG
GGGCGAAGTAGATGGTGATAAAACCTCTTGGTCGAGTAGGGCTGCGCTGG
TTTGGCAGCAGAGGACATGAAGGCCATTAGCTTTTCCGACGGCGGTACAA
AAGGTGAGGGCAGATATACCCCGGGTTCAATAACGACCGGGTTGTGTTGC
CTACGCCATCGAATCATGATCGAGTGAGGTCCGTTCGTCGATTGGTCCAA
CGTTTCTGTACATGACGAGCAACGATTCAGACCACCGCTTCACCCGCTTC
CCCCCCCGGCGACAAACCATCGCAGGTTCGCTACGAGATTACGTGACTTG
CAAGGAGTGTCACTCGGAGAGCAGCCGTCTGGACAACTTTCTTGATATTT
CCCTCGTTCTGCGACCCTTCGGCAGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18989:2111..3386-

>mRNA_Ecto-sp13_S_contig18989.6017.1 ID=mRNA_Ecto-sp13_S_contig18989.6017.1|Name=mRNA_Ecto-sp13_S_contig18989.6017.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18989:2111..3386- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTTCGATCGGCGCTGTACGAGTGGAAGCACGGCCCGCAGTCTTCTTC
GGGGGGTACAGCAGATGAGGATCCAAGCGAGTGCATCCCGCTGCAGCTGC
AGAAGCTGTTCGGGCAGCTGCAGCTCAGCGACGAGACGTGCGTGGAGACT
AGGGCGCTCACCGACAGCTTCGGGTGGACTGCGCAGGCGAGTGCTTCTCT
CTCTTGGCGGGGCCGCGACTCCTTCCAGCAGCACGACGTGCAGGAGCTGT
GCAGGGTGCTGTTCGACGCCCTCGAAAGCACGTTCCAGGGAACGGTCAAC
GAAAAGCTGGTCAACAACCTCTACCAGGGTTCGCTACGAGATTACGTGAC
TTGCAAGGAGTGTCACTCGGAGAGCAGCCGTCTGGACAACTTTCTTGATA
TTTCCCTCGTTCTGCGACCCTTCGGCAGC
back to top