mRNA_Ecto-sp13_S_contig18979.6014.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18979.6014.1
Unique NamemRNA_Ecto-sp13_S_contig18979.6014.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18979.6014.1 vs. uniprot
Match: D7G9A6_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9A6_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 3.030e-43
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 1
Query:    1 WKHVAALDYPDLKVFVLDDGASDEVKALASKFGFEYVLRSNAPELKKAGNLRNAFGITSGEAIAIFDADFCPRPDFLKETVAY 249
            WK+VAALDYPD KVFVLDDGASDEVKALAS FGFEYVLRSNAPELKKAGNLRNAF +TSGEAIAIFDADFCPRP+FLKETV Y
Sbjct:  743 WKYVAALDYPDFKVFVLDDGASDEVKALASVFGFEYVLRSNAPELKKAGNLRNAFAMTSGEAIAIFDADFCPRPEFLKETVPY 825          
BLAST of mRNA_Ecto-sp13_S_contig18979.6014.1 vs. uniprot
Match: D7G9A2_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A2_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 3.200e-41
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1
Query:    1 WKHVAALDYPDLKVFVLDDGASDEVKALASKFGFEYVLRSNAPELKKAGNLRNAFGITSGEAIAIFDADFCPRPDFLKETVAY 249
            W+HVAALDYPD KVFVLDDGASDEV ALASKFGFEYV+R +AP LKKAGNLRNAF  TSGEAIAIFDADFCPRPDFLKETV Y
Sbjct:  782 WQHVAALDYPDFKVFVLDDGASDEVAALASKFGFEYVVREDAPALKKAGNLRNAFARTSGEAIAIFDADFCPRPDFLKETVPY 864          
BLAST of mRNA_Ecto-sp13_S_contig18979.6014.1 vs. uniprot
Match: D7G9A1_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A1_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 1.580e-37
Identity = 68/83 (81.93%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    1 WKHVAALDYPDLKVFVLDDGASDEVKALASKFGFEYVLRSNAPELKKAGNLRNAFGITSGEAIAIFDADFCPRPDFLKETVAY 249
            WK+VAALDYPD KVFVLDDGAS+  +ALAS FGFEYVLR++ P LKKAGNLRNAF  TSGEAIAIFDADFCPR DFLKETV Y
Sbjct:  501 WKYVAALDYPDFKVFVLDDGASEGAQALASTFGFEYVLRADVPALKKAGNLRNAFARTSGEAIAIFDADFCPRADFLKETVPY 583          
BLAST of mRNA_Ecto-sp13_S_contig18979.6014.1 vs. uniprot
Match: D7FQH7_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQH7_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.110e-33
Identity = 59/83 (71.08%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    1 WKHVAALDYPDLKVFVLDDGASDEVKALASKFGFEYVLRSNAPELKKAGNLRNAFGITSGEAIAIFDADFCPRPDFLKETVAY 249
            W HV A+DYP + V VLDDGA DEVKALA ++GF+Y+ R N PELKKAGNLR+AF  TSGE I IFDADFCPRPDFL+ET+ Y
Sbjct:  471 WNHVLAMDYPHVTVHVLDDGAKDEVKALAGEYGFQYIRRDNRPELKKAGNLRHAFARTSGEVIVIFDADFCPRPDFLRETLPY 553          
BLAST of mRNA_Ecto-sp13_S_contig18979.6014.1 vs. uniprot
Match: A0A6H5K7X7_9PHAE (GT2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X7_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.150e-33
Identity = 73/122 (59.84%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 WKHVAALDYPDLKVFVLDDGASDEVKALASKFGFEY---------------------------------------VLRSNAPELKKAGNLRNAFGITSGEAIAIFDADFCPRPDFLKETVAY 249
            W+HVAALDYPD KVFVLDDGASDEVKALASKFGFE                                        VLR +AP LKKAGNLRNAF  TSGEAIAIFDADFCPR DFLKETV Y
Sbjct:  845 WQHVAALDYPDFKVFVLDDGASDEVKALASKFGFESRYVPSPIVTYFVLSRPPYRYCSMLLPDAATHCCRGIAEDVLREDAPALKKAGNLRNAFARTSGEAIAIFDADFCPRADFLKETVPY 966          
BLAST of mRNA_Ecto-sp13_S_contig18979.6014.1 vs. uniprot
Match: A0A1X7RRC4_ZYMTR (Glyco_trans_2-like domain-containing protein n=3 Tax=Zymoseptoria TaxID=1047167 RepID=A0A1X7RRC4_ZYMTR)

HSP 1 Score: 117 bits (292), Expect = 9.990e-29
Identity = 54/83 (65.06%), Postives = 66/83 (79.52%), Query Frame = 1
Query:    1 WKHVAALDYPDLKV--FVLDDGASDEVKALASKFGFEYVLRSNAPELKKAGNLRNAFGITSGEAIAIFDADFCPRPDFLKETV 243
            WKHVAA+ YP LK+   VLDDGA DEVK+LA+ FGF Y++R + P LKK+GNLRNAF  TSG+   +FDADFCPRPDFL+E +
Sbjct:  250 WKHVAAMRYPGLKMQPVVLDDGAQDEVKSLAATFGFRYIVRDDRPLLKKSGNLRNAFNHTSGDYFVVFDADFCPRPDFLEELI 332          
BLAST of mRNA_Ecto-sp13_S_contig18979.6014.1 vs. uniprot
Match: A0A6A6WJ94_9PEZI (Glyco_trans_2-like domain-containing protein n=1 Tax=Pseudovirgaria hyperparasitica TaxID=470096 RepID=A0A6A6WJ94_9PEZI)

HSP 1 Score: 113 bits (282), Expect = 2.550e-27
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 1
Query:    1 WKHVAALDYPD--LKVFVLDDGASDEVKALASKFGFEYVLRSNAPELKKAGNLRNAFGITSGEAIAIFDADFCPRPDFLKE 237
            W HV+AL YP+  +KV+VLDDGA D VKALA+KFG+ Y++R N P LKKAGNLR AF  T     +IFDADFCPRPDFL E
Sbjct:  435 WNHVSALQYPEGKIKVWVLDDGADDNVKALATKFGYNYIVRDNRPHLKKAGNLRYAFARTEAPFFSIFDADFCPRPDFLLE 515          
BLAST of mRNA_Ecto-sp13_S_contig18979.6014.1 vs. uniprot
Match: A0A423W1P2_9PEZI (Glyco_trans_2-like domain-containing protein n=4 Tax=Valsa TaxID=83174 RepID=A0A423W1P2_9PEZI)

HSP 1 Score: 111 bits (278), Expect = 7.910e-27
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 1
Query:    1 WKHVAALDYP--DLKVFVLDDGASDEVKALASKFGFEYVLRSNAPELKKAGNLRNAFGITSGEAIAIFDADFCPRPDFLKE 237
            WKHV ALD+P   ++V VLDDGA D V+ LA ++GFEY++R + P LKKAGNLR AF  T+G+  AIFDADFCPRPDFL+E
Sbjct:  235 WKHVTALDWPADKIRVHVLDDGAKDTVRRLAGQYGFEYMVRDDRPRLKKAGNLRWAFARTTGDFFAIFDADFCPRPDFLRE 315          
BLAST of mRNA_Ecto-sp13_S_contig18979.6014.1 vs. uniprot
Match: A0A8H4R1D6_9AGAR (Glyco_trans_2-like domain-containing protein n=1 Tax=Agrocybe pediades TaxID=84607 RepID=A0A8H4R1D6_9AGAR)

HSP 1 Score: 110 bits (276), Expect = 1.630e-26
Identity = 52/83 (62.65%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 WKHVAALDYPDLKVFVLDDGASDEVKALASKFGFEYVLRSNAPELKKAGNLRNAFGITSGEAIAIFDADFCPRPDFLKETVAY 249
            +K+VA L YP+ KV+VLDDG  D VKALA +FGF Y+ R + P LKKAGNLR AF  T G+  AIFDADFCPR DFL E + Y
Sbjct:  400 YKYVAQLQYPNFKVYVLDDGGLDTVKALAERFGFNYISRDDKPHLKKAGNLRYAFARTKGDFFAIFDADFCPRRDFLDEMLPY 482          
BLAST of mRNA_Ecto-sp13_S_contig18979.6014.1 vs. uniprot
Match: A0A8H6I364_9AGAR (Nucleotide-diphospho-sugar transferase n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H6I364_9AGAR)

HSP 1 Score: 109 bits (272), Expect = 3.920e-26
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    1 WKHVAALDYPDLKVFVLDDGASDEVKALASKFGFEYVLRSNAPELKKAGNLRNAFGITSGEAIAIFDADFCPRPDFLKETV 243
            +K+VA +DYP+LKV+VLDDG  D VK LA+ +GF Y+ R N PELKKAGNLR AF  T G+   IFDADFCPR D LK+ +
Sbjct:  129 YKYVAKIDYPNLKVWVLDDGGMDSVKRLATAYGFNYICRDNRPELKKAGNLRYAFTRTEGDFFLIFDADFCPRADILKDMI 209          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18979.6014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9A6_ECTSI3.030e-4391.57Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
D7G9A2_ECTSI3.200e-4187.95Cellulose synthase (UDP-forming), family GT2 n=1 T... [more]
D7G9A1_ECTSI1.580e-3781.93Cellulose synthase (UDP-forming), family GT2 n=1 T... [more]
D7FQH7_ECTSI1.110e-3371.08Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
A0A6H5K7X7_9PHAE2.150e-3359.84GT2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A1X7RRC4_ZYMTR9.990e-2965.06Glyco_trans_2-like domain-containing protein n=3 T... [more]
A0A6A6WJ94_9PEZI2.550e-2765.43Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A423W1P2_9PEZI7.910e-2764.20Glyco_trans_2-like domain-containing protein n=4 T... [more]
A0A8H4R1D6_9AGAR1.630e-2662.65Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A8H6I364_9AGAR3.920e-2661.73Nucleotide-diphospho-sugar transferase n=1 Tax=Tul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18979contigEcto-sp13_S_contig18979:1749..3325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score159.1
Seed ortholog evalue9.1e-37
Seed eggNOG ortholog2880.D7G9A6
Model size253
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Glycosyl transferase family 21
EggNOG OGs2C0MJ@1,2S2MV@2759
Cds size249
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462968.4790459-CDS-Ecto-sp13_S_contig18979:1748..18541681462968.4790459-CDS-Ecto-sp13_S_contig18979:1748..1854Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18979 1749..1854 +
1681462968.4994867-CDS-Ecto-sp13_S_contig18979:2576..26881681462968.4994867-CDS-Ecto-sp13_S_contig18979:2576..2688Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18979 2577..2688 +
1681462968.508525-CDS-Ecto-sp13_S_contig18979:3292..33231681462968.508525-CDS-Ecto-sp13_S_contig18979:3292..3323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18979 3293..3323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18979.6014.1prot_Ecto-sp13_S_contig18979.6014.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18979 1749..3323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18979.6014.1

>prot_Ecto-sp13_S_contig18979.6014.1 ID=prot_Ecto-sp13_S_contig18979.6014.1|Name=mRNA_Ecto-sp13_S_contig18979.6014.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
WKHVAALDYPDLKVFVLDDGASDEVKALASKFGFEYVLRSNAPELKKAGN
LRNAFGITSGEAIAIFDADFCPRPDFLKETVAY
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mRNA from alignment at Ecto-sp13_S_contig18979:1749..3325+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18979.6014.1 ID=mRNA_Ecto-sp13_S_contig18979.6014.1|Name=mRNA_Ecto-sp13_S_contig18979.6014.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1577bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18979:1749..3325+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGAAGCACGTGGCCGCGCTGGACTACCCCGACTTGAAGGTGTTCGTGTT GGACGACGGCGCCAGCGACGAGGTCAAGGCTCTCGCCTCTAAGTTCGGGT TCGAATGTGAGCCTTGAGTCGTGGTGGTAGTACCGTGGCGTTCACCGAAA AAGCCGGTGGTGGGGGTGGGGGCAGCTGGTAGGTAATGCCCGCGAGCCTT TTATGAGGTGGGGCAGCCGCCTTATTTCAACCTGTGGATTCACTCGATTC TCCCGTCTATGCCTGCCAATTTTCGCCCGCCATGCGTGGGGTAACCGCCT TGTTCGGGGATCCCCACTGCATTAAAAGTAGTAGTAGGAGGAAGAAGTCT CCGAAGAAGAGGGCATTCGAATGGCACGGGGTTGCACAGGAGACACGGCG GAGCACGAGGGGGATGTGTTGTTACAGTCGATCTTCCTTTTCGAGATGAC GAGGTTTTTGGTGAAGGCGATTTCTCGTACGGATGTTTCGAGCACGCCCG CTCTTTTTGTGGAATTGATTGCTCTGTCCCGCGACGCTCGGTTCTGCGCG ACCAGTTGGAGTCTCGTTCACAGTCACCCCGCCATTCATATAAAGTGTTT GTGATTCGCGAGAGGTAGCGGGAGACAATCTCCGTCTTTCCTGTCTTTTA CACACTTTCTACAGGCAGTTTGTTCTTTCACGGCCTGTTGATGGACCCTT GGACCCACTCGAAGGTTGTCTCCGTTCTCTTTCCACTCGATTCTTCCCTT CTTCTGAATCTGCCGTTTCTGTTGCGGTTAATCCGCGCTGCTTTCGCCGT GCGTTGCGACGTGCTGCTTGCCGTGTAGATGTGTTGCGGTCCAACGCCCC GGAGCTGAAGAAGGCGGGAAACCTGCGCAACGCCTTCGGGATCACCTCGG GGGAAGCGATCGCTATCTTCGACGCCGACTTTTGCCCCAGGTAAGTTAGA ACACGCAAAATATCGATACATGGCCCGTGGTGCGAAGTTGTCGGAAAGTT TGTGTTTTGTAGTGGTAGTAGGTGCTGCTGCGTTTCGCGCGCGTTGGCTT CCCAAGAAGCACCATTTTTTTTTGTGGGGAGGCGGTCAGCAGTGTGTTGG GGGTATGTATGGGCAGAGGCCCCCTATACTGCGAGCATGTGCCACGCACT TTCGTCCGCATAATCTTTTGCGGGCACCCGCATTATTCCATATATTGAAT CATCTTTGATATTCCTTCTGTGTGTCAGTCAATTTCTACCGCACTACATC AGGCACCCATGCTTTAGCGGGTAATCGCACTCTCCGACTCGAACTGTCTC GGGCCCCTTGTTTCTGCACACGAAGGATTGCTTTCTTGATTTAGTGCGCA CCGAGTGTGACTATATATTTCATGACGTAAACCGGCAGACTGATGAAACC GCGACGTTCCCGGCGAGTTGATTGGCGCTGACCTAGCGCAATGGATGGCT AGATCCGCTGTCTTTTGCTTGGCTCATCGTAGCAGCAGCACCTTCATCGC CTTCTATGTGTCTGCTACGATTGGGTTTTGTGCGCGTGTTGCAGGCCGGA CTTTTTGAAGGAGACCGTAGCCTATCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18979:1749..3325+

>mRNA_Ecto-sp13_S_contig18979.6014.1 ID=mRNA_Ecto-sp13_S_contig18979.6014.1|Name=mRNA_Ecto-sp13_S_contig18979.6014.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18979:1749..3325+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGAAGCACGTGGCCGCGCTGGACTACCCCGACTTGAAGGTGTTCGTGTT
GGACGACGGCGCCAGCGACGAGGTCAAGGCTCTCGCCTCTAAGTTCGGGT
TCGAATATGTGTTGCGGTCCAACGCCCCGGAGCTGAAGAAGGCGGGAAAC
CTGCGCAACGCCTTCGGGATCACCTCGGGGGAAGCGATCGCTATCTTCGA
CGCCGACTTTTGCCCCAGGCCGGACTTTTTGAAGGAGACCGTAGCCTAT
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