mRNA_Ecto-sp13_S_contig1896.6004.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1896.6004.1
Unique NamemRNA_Ecto-sp13_S_contig1896.6004.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1896.6004.1 vs. uniprot
Match: A0A6H5KFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY7_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 1.990e-59
Identity = 99/118 (83.90%), Postives = 102/118 (86.44%), Query Frame = 1 
Query:    1 PIHFAAHHGLDEVVVSLCQKGIDLNCLNTRKETPLLLAVKRNHVATINALLAEGADPNFLTTGRPLPLTHIAALQNNAAAMLALFKAGVDIEGRSPKGLTPLHNAAFCGLCEAMLALL 354
            PIHFAAHHGLDEVVVSL  KGID  C+ TR+ET LLLAVKRNHVA INALLAEGAD NFLTT RP+PL HIAAL NNAAAM ALFKAGV IEGRSPKG TPL NAAFCG CEAMLALL
Sbjct:   28 PIHFAAHHGLDEVVVSLFHKGIDPTCVTTREETHLLLAVKRNHVAIINALLAEGADVNFLTTRRPVPLAHIAALHNNAAAMPALFKAGVYIEGRSPKGRTPLQNAAFCGSCEAMLALL 145
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BLAST of mRNA_Ecto-sp13_S_contig1896.6004.1 vs. uniprot
Match: D7G2A3_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A3_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 7.300e-33
Identity = 62/102 (60.78%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:   16 AHHGLDEVVVSLCQKGIDLNCLNTRKETPLLLAVKRNHVATINALLAEGADPNFLTTGRPLPLTHIAALQNNAAAMLALFKAGVDIEGRSPKGLTPLHNAAF 321
            A HGLDEVV++L +KG+DLNCLN++ ETPL LAV+ +HV T+  LL+EGADP+F    RPL L H+AA +N AAA+ ALF+AGV+IEGR+  G TPL  AA 
Sbjct:  180 AWHGLDEVVLALGEKGVDLNCLNSKGETPLRLAVRGDHVTTVKVLLSEGADPHFRAANRPLKLLHVAAKRNRAAAIPALFEAGVNIEGRTSSGRTPLRYAAI 281
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BLAST of mRNA_Ecto-sp13_S_contig1896.6004.1 vs. uniprot
Match: A0A6H5JU78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU78_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.370e-13
Identity = 43/94 (45.74%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:    1 PIHFAAHHGLDEVVVSLCQKGIDLNCLNTRKETPLLLAVKRNHVATINALLAEGADPNFLTTGRPLPLTHIAALQNNAAAMLALFKAGVDIEGR 282
            PIH AA HGLDEVV+++ +KGIDLNCLN ++E PLLLA+ R                             IAA +N AAA+  LF+AG DIE R
Sbjct:  113 PIHLAACHGLDEVVLAVVEKGIDLNCLNNKREIPLLLALLR-----------------------------IAACENKAAAIRVLFEAGADIEAR 177
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BLAST of mRNA_Ecto-sp13_S_contig1896.6004.1 vs. uniprot
Match: A0A6A6Z7N1_9PEZI (uncharacterized protein n=1 Tax=Mytilinidion resinicola TaxID=574789 RepID=A0A6A6Z7N1_9PEZI)

HSP 1 Score: 70.9 bits (172), Expect = 7.330e-12
Identity = 40/103 (38.83%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:    1 PIHFAAHHGLDEVVVSLCQKGIDLNCLNTRKETPLLLAVKRNHVATINALLAE--GADPNFLTTGRPLPLTHIAALQNNAAAMLALFKAGVDIEGRSPKGLTP 303
            P++FA   GLD++V  L  K  ++NC  + K TPL+ AV+ NH++ +  L+    GAD +F T  R L   H+AA   N + +  L  AG  I+ RS  G TP
Sbjct:  708 PLYFAIRFGLDDIVDVLLPKFPNINCHFSDKYTPLVCAVRYNHISLVRKLIDPRVGADVDFPTKARGLTALHMAAELANESMVEVLLNAGASIQVRSKSGTTP 810
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BLAST of mRNA_Ecto-sp13_S_contig1896.6004.1 vs. uniprot
Match: A0A0P7BM81_9HYPO (Uncharacterized protein n=1 Tax=Neonectria ditissima TaxID=78410 RepID=A0A0P7BM81_9HYPO)

HSP 1 Score: 68.9 bits (167), Expect = 3.450e-11
Identity = 42/118 (35.59%), Postives = 59/118 (50.00%), Query Frame = 1 
Query:    1 PIHFAAHHGLDEVVVSLCQKGIDLNCLNTRKETPLLLAVKRNHVATINALLAEGADPNFLTTGRPLPLTHIAALQNNAAAMLALFKAGVDIEGRSPKGLTPLHNAAFCGLCEAMLALL 354
            PIH AA H  D++++ L   G  L        TPL +A    H++T+  L+  GA+P  LTT     L   +A   N A +  L + GVD+  R+ +G T LH AA  G   A+  LL
Sbjct:  695 PIHMAAQHARDDILLRLVSCGACLESTVFPGRTPLTVAASHGHLSTVQLLMRLGANPRTLTTYGDTVLFEASA---NQATLKYLIQQGVDVNHRNDQGATALHYAALRGHIGAVRLLL 809
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BLAST of mRNA_Ecto-sp13_S_contig1896.6004.1 vs. uniprot
Match: A0A8H4UL35_9HYPO (Uncharacterized protein n=1 Tax=Fusarium zealandicum TaxID=1053134 RepID=A0A8H4UL35_9HYPO)

HSP 1 Score: 67.4 bits (163), Expect = 1.180e-10
Identity = 38/109 (34.86%), Postives = 55/109 (50.46%), Query Frame = 1 
Query:    1 PIHFAAHHGLDEVVVSLCQKGIDLNCLNTRKETPLLLAVKRNHVATINALLAEGADPNFLTTGRPLPLTHIAALQNNAAAMLALFKAGVDIEGRSPKGLTPLHNAAFCG 327
            PIH AA H  D++++ L   G  L        TPL +A    H++T+  LL  GA+ + LTT     L   +A   N A +  L + G+D+  R+ +G T LH AA  G
Sbjct:  601 PIHVAAQHARDDIMLQLISHGASLESTIFPGRTPLSVAASHGHLSTVQLLLRLGANVHALTTHSDTILFEASA---NQATLKLLLQQGIDVNHRNDRGATALHYAALRG 706
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BLAST of mRNA_Ecto-sp13_S_contig1896.6004.1 vs. uniprot
Match: A0A8H5WW41_FUSHE (Ankyrin 3 n=2 Tax=Fusarium TaxID=5506 RepID=A0A8H5WW41_FUSHE)

HSP 1 Score: 65.5 bits (158), Expect = 5.600e-10
Identity = 39/109 (35.78%), Postives = 54/109 (49.54%), Query Frame = 1 
Query:    1 PIHFAAHHGLDEVVVSLCQKGIDLNCLNTRKETPLLLAVKRNHVATINALLAEGADPNFLTTGRPLPLTHIAALQNNAAAMLALFKAGVDIEGRSPKGLTPLHNAAFCG 327
            PIH AA H  DE++V L   G  L        TPL +A    HV+T+  LL  GA+ + LTT     L   +A   N A +  L +  +D+  ++ +G T LH AA  G
Sbjct:  618 PIHVAAQHARDEILVRLVSYGASLESTIFPGRTPLSVAASHGHVSTVRLLLRLGANTHALTTHGDTLLFQASA---NLATLKILLQQKIDVNHQNDRGATALHYAALRG 723
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BLAST of mRNA_Ecto-sp13_S_contig1896.6004.1 vs. uniprot
Match: D8LHQ7_ECTSI (F-box domain and ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ7_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.450e-9
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   16 AHHGLDEVVVSLCQKGIDLNCLNTRKETPLLLAVKRNHVATINALLAEGADPNFLTTGR 192
            A +GLDEVV++L QKG+DLNC+NTR E PL +A++ +HVATI  L        F T+ R
Sbjct:  222 ACYGLDEVVLALVQKGVDLNCVNTRGEIPLCVALRGDHVATIKVLALTPTSDIFCTSQR 280
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BLAST of mRNA_Ecto-sp13_S_contig1896.6004.1 vs. uniprot
Match: UPI000F558027 (ankyrin-1-like n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F558027)

HSP 1 Score: 63.2 bits (152), Expect = 3.310e-9
Identity = 37/108 (34.26%), Postives = 56/108 (51.85%), Query Frame = 1 
Query:    4 IHFAAHHGLDEVVVSLCQKGIDLNCLNTRKE-TPLLLAVKRNHVATINALLAEGADPNFLTTGRPLPLTHIAALQNNAAAMLALFKAGVDIEGRSPKGLTPLHNAAFC 324
            +H AA  G   +V S+  +GID++  +     TPL++AVK NHV  +  LL +GAD +  T        HIA+   +  A+  L    +  + R  +G TPL +AA C
Sbjct:   33 LHAAAEGGNISIVKSMLSRGIDIDSKDDESSVTPLIIAVKENHVEVMKYLLQKGADISLTTGSYERNALHIASQYGSVTAIEMLLSYDLRPDSRDREGNTPLVSAAAC 140
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BLAST of mRNA_Ecto-sp13_S_contig1896.6004.1 vs. uniprot
Match: A0A3M6TST9_POCDA (Glycos_transf_1 domain-containing protein (Fragment) n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TST9_POCDA)

HSP 1 Score: 63.2 bits (152), Expect = 3.710e-9
Identity = 37/108 (34.26%), Postives = 56/108 (51.85%), Query Frame = 1 
Query:    4 IHFAAHHGLDEVVVSLCQKGIDLNCLNTRKE-TPLLLAVKRNHVATINALLAEGADPNFLTTGRPLPLTHIAALQNNAAAMLALFKAGVDIEGRSPKGLTPLHNAAFC 324
            +H AA  G   +V S+  +GID++  +     TPL++AVK NHV  +  LL +GAD +  T        HIA+   +  A+  L    +  + R  +G TPL +AA C
Sbjct:  427 LHAAAEGGNISIVKSMLSRGIDIDSKDDESSVTPLIIAVKENHVEVMKYLLQKGADISLTTGSYERNALHIASQYGSVTAIEMLLSYDLRPDSRDREGNTPLVSAAAC 534
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1896.6004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFY7_9PHAE1.990e-5983.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2A3_ECTSI7.300e-3360.78Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5JU78_9PHAE2.370e-1345.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A6Z7N1_9PEZI7.330e-1238.83uncharacterized protein n=1 Tax=Mytilinidion resin... [more]
A0A0P7BM81_9HYPO3.450e-1135.59Uncharacterized protein n=1 Tax=Neonectria ditissi... [more]
A0A8H4UL35_9HYPO1.180e-1034.86Uncharacterized protein n=1 Tax=Fusarium zealandic... [more]
A0A8H5WW41_FUSHE5.600e-1035.78Ankyrin 3 n=2 Tax=Fusarium TaxID=5506 RepID=A0A8H5... [more]
D8LHQ7_ECTSI1.450e-952.54F-box domain and ankyrin repeat protein n=1 Tax=Ec... [more]
UPI000F5580273.310e-934.26ankyrin-1-like n=1 Tax=Pocillopora damicornis TaxI... [more]
A0A3M6TST9_POCDA3.710e-934.26Glycos_transf_1 domain-containing protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1896contigEcto-sp13_S_contig1896:695..1051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score129.8
Seed ortholog evalue8.5e-28
Seed eggNOG ortholog2880.D7G2A3
Model size357
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size357
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462967.6293-CDS-Ecto-sp13_S_contig1896:694..10511681462967.6293-CDS-Ecto-sp13_S_contig1896:694..1051Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1896 695..1051 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1896.6004.1prot_Ecto-sp13_S_contig1896.6004.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1896 695..1051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1896.6004.1

>prot_Ecto-sp13_S_contig1896.6004.1 ID=prot_Ecto-sp13_S_contig1896.6004.1|Name=mRNA_Ecto-sp13_S_contig1896.6004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
PIHFAAHHGLDEVVVSLCQKGIDLNCLNTRKETPLLLAVKRNHVATINAL
LAEGADPNFLTTGRPLPLTHIAALQNNAAAMLALFKAGVDIEGRSPKGLT
PLHNAAFCGLCEAMLALL*
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mRNA from alignment at Ecto-sp13_S_contig1896:695..1051-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1896.6004.1 ID=mRNA_Ecto-sp13_S_contig1896.6004.1|Name=mRNA_Ecto-sp13_S_contig1896.6004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1896:695..1051- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGATCCACTTCGCTGCTCACCACGGCCTGGATGAGGTGGTGGTTTCGTT
GTGCCAGAAGGGGATCGACCTGAATTGCCTTAACACCCGAAAAGAGACTC
CTCTCCTTCTGGCGGTGAAAAGGAACCATGTGGCCACCATCAATGCGCTC
TTGGCTGAAGGCGCCGATCCAAACTTCCTAACGACGGGACGGCCTCTACC
ATTGACGCACATTGCAGCTTTGCAGAACAATGCGGCCGCCATGCTAGCGC
TCTTCAAAGCCGGAGTCGATATCGAAGGTAGGAGTCCAAAAGGACTAACC
CCACTCCACAACGCAGCTTTTTGCGGCTTGTGTGAAGCCATGCTGGCTCT
ATTGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1896:695..1051-

>mRNA_Ecto-sp13_S_contig1896.6004.1 ID=mRNA_Ecto-sp13_S_contig1896.6004.1|Name=mRNA_Ecto-sp13_S_contig1896.6004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1896:695..1051- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGATCCACTTCGCTGCTCACCACGGCCTGGATGAGGTGGTGGTTTCGTT
GTGCCAGAAGGGGATCGACCTGAATTGCCTTAACACCCGAAAAGAGACTC
CTCTCCTTCTGGCGGTGAAAAGGAACCATGTGGCCACCATCAATGCGCTC
TTGGCTGAAGGCGCCGATCCAAACTTCCTAACGACGGGACGGCCTCTACC
ATTGACGCACATTGCAGCTTTGCAGAACAATGCGGCCGCCATGCTAGCGC
TCTTCAAAGCCGGAGTCGATATCGAAGGTAGGAGTCCAAAAGGACTAACC
CCACTCCACAACGCAGCTTTTTGCGGCTTGTGTGAAGCCATGCTGGCTCT
ATTGTAA
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