prot_Ecto-sp13_S_contig1895.6001.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1895.6001.1
Unique Nameprot_Ecto-sp13_S_contig1895.6001.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length152
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1895.6001.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 2..57
e-value: 3.9E-12
score: 45.7
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 71..89
e-value: 0.15
score: 12.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..140
e-value: 3.4E-41
score: 143.1
NoneNo IPR availablePANTHERPTHR45974FAMILY NOT NAMEDcoord: 2..109
coord: 59..115
NoneNo IPR availablePANTHERPTHR45974:SF42coord: 2..109
coord: 59..115
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1895contigEcto-sp13_S_contig1895:933..8654 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1895.6001.1mRNA_Ecto-sp13_S_contig1895.6001.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1895 718..8713 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1895.6001.1 ID=prot_Ecto-sp13_S_contig1895.6001.1|Name=mRNA_Ecto-sp13_S_contig1895.6001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp
MLDLSNNSLEGPFPEALRDLKELKRLYLSHNNLTGSVPSWLGSLRKLQGL
QLSSNHLTGPIPVSLGALTDLTHLDLRNNKLTGPIPQELGAPKELTILGL
GDNKLTGPIPEALGAVEEPTERFPEELGCSRTSSSSLSRLPTAAAGNKQG
R*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf