mRNA_Ecto-sp13_S_contig1.4.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1.4.1
Unique NamemRNA_Ecto-sp13_S_contig1.4.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1.4.1 vs. uniprot
Match: D7G1Z7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Z7_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 3.180e-32
Identity = 58/69 (84.06%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 MCVFRRCVLIGRHCTVTMPYPQRPLSGGQEDGSPQTSWSPGTLTHEFEVTVKYLRREIRDLPDRDRETF 207
            MCVFRR  LIGRHCTVT+ YPQ PLSGGQED SPQTS S GTLTHE EVTVKY+RREIRDL DRDRETF
Sbjct:    1 MCVFRRRFLIGRHCTVTVSYPQPPLSGGQEDDSPQTSGSLGTLTHELEVTVKYVRREIRDLTDRDRETF 69
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BLAST of mRNA_Ecto-sp13_S_contig1.4.1 vs. uniprot
Match: D7FSN5_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN5_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 4.190e-20
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:   40 CTVTMPYPQRPLSGGQEDGSPQTSWSPGTLTHEFEVTVKYLRREIRDLPDRDRETF 207
            CTVT+ YPQRPLSGG ED SP+TS S  T+TH+FEVTVKY+RREIRDL DRDRETF
Sbjct:   64 CTVTVSYPQRPLSGGHEDDSPETSGSLATVTHKFEVTVKYVRREIRDLTDRDRETF 119
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BLAST of mRNA_Ecto-sp13_S_contig1.4.1 vs. uniprot
Match: A0A6H5JNJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ2_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 7.210e-11
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:  206 FFNAGSVLQRVPSAVGCEIYGDKHYSADYFDRLHLCYG 319
            FFNA SVLQRVPSAVG  +YGDK+YS DYF+R+HL YG
Sbjct:   94 FFNAVSVLQRVPSAVGRAVYGDKYYSKDYFNRMHLYYG 131
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BLAST of mRNA_Ecto-sp13_S_contig1.4.1 vs. uniprot
Match: A0A6H5JTC5_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC5_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 8.610e-11
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 2 
Query:  206 FFNAGSVLQRVPSAVGCEIYGDKHYSADYFDRLHLCYGG 322
            FFNA SVLQRVPSAVG  +YGDK+YS DYF+R+HL YGG
Sbjct:  293 FFNAVSVLQRVPSAVGRAVYGDKYYSKDYFNRMHLYYGG 331
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BLAST of mRNA_Ecto-sp13_S_contig1.4.1 vs. uniprot
Match: A0A6H5JFW1_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFW1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.120e-10
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2 
Query:  206 FFNAGSVLQRVPSAVGCEIYGDKHYSADYFDRLHLCYGG 322
            FFNA SVLQRVPSAVG EIYGDK+YS DYF RLHL YGG
Sbjct:   65 FFNAMSVLQRVPSAVGREIYGDKYYSMDYFTRLHL-YGG 102
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BLAST of mRNA_Ecto-sp13_S_contig1.4.1 vs. uniprot
Match: D8LAY9_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY9_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.160e-10
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 2 
Query:  206 FFNAGSVLQRVPSAVGCEIYGDKHYSADYFDRLHLCYGG 322
            FFNA +VLQRVPSAVG  +YGDK+YS DYF+R+HL YGG
Sbjct:  222 FFNAVAVLQRVPSAVGRAVYGDKYYSKDYFNRMHLYYGG 260
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1.4.1 vs. uniprot
Match: A0A6H5K5A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A2_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.480e-10
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:  206 FFNAGSVLQRVPSAVGCEIYGDKHYSADYFDRLHLCYG 319
            FFNA SVLQRVPSAVG  +YGDK+YS DYF+R+HL YG
Sbjct:  105 FFNAVSVLQRVPSAVGRAVYGDKYYSKDYFNRMHLYYG 142
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BLAST of mRNA_Ecto-sp13_S_contig1.4.1 vs. uniprot
Match: A0A6H5K0F0_9PHAE (Tyrosinase_Cu-bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0F0_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.510e-10
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 2 
Query:  206 FFNAGSVLQRVPSAVGCEIYGDKHYSADYFDRLHLCYGG 322
            FFNA SVLQRVPSAVG  +YGDK+YS D+F+R+HL YGG
Sbjct:   92 FFNAVSVLQRVPSAVGRALYGDKYYSKDFFNRMHLYYGG 130
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1.4.1 vs. uniprot
Match: D7FSM9_ECTSI (Tyrosinase-like protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSM9_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.410e-9
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 2 
Query:  206 FFNAGSVLQRVPSAVGCEIYGDKHYSADYFDRLHLCYGG 322
            FFNA SVLQRVPS VG EIYGDK+YS DYF R+HL YGG
Sbjct:  206 FFNAVSVLQRVPSVVGREIYGDKYYSMDYFTRMHL-YGG 243
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1.4.1 vs. uniprot
Match: D7G1K2_ECTSI (Hypothetical tyrosinase-like protein F21C3.2 in chromosome I, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K2_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.890e-9
Identity = 26/39 (66.67%), Postives = 34/39 (87.18%), Query Frame = 2 
Query:  206 FFNAGSVLQRVPSAVGCEIYGDKHYSADYFDRLHLCYGG 322
            FFNA S++QRVPSAVG ++YG K+YS D+F+R+HL YGG
Sbjct:  115 FFNAVSIMQRVPSAVGQQVYGSKYYSKDFFNRIHLYYGG 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G1Z7_ECTSI3.180e-3284.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSN5_ECTSI4.190e-2078.57Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
A0A6H5JNJ2_9PHAE7.210e-1176.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC5_9PHAE8.610e-1176.92TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5JFW1_9PHAE2.120e-1084.62TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LAY9_ECTSI2.160e-1074.36Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
A0A6H5K5A2_9PHAE3.480e-1076.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0F0_9PHAE3.510e-1074.36Tyrosinase_Cu-bd domain-containing protein n=1 Tax... [more]
D7FSM9_ECTSI1.410e-979.49Tyrosinase-like protein 2 n=1 Tax=Ectocarpus silic... [more]
D7G1K2_ECTSI1.890e-966.67Hypothetical tyrosinase-like protein F21C3.2 in ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1contigEcto-sp13_S_contig1:24693..25155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size333
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionUncharacterised domain, di-copper centre
Ec32 orthologEc-07_003560.1
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462497.681934-CDS-Ecto-sp13_S_contig1:24692..249861681462497.681934-CDS-Ecto-sp13_S_contig1:24692..24986Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1 24693..24986 -
1681462497.69736-CDS-Ecto-sp13_S_contig1:25116..251551681462497.69736-CDS-Ecto-sp13_S_contig1:25116..25155Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1 25117..25155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1.4.1prot_Ecto-sp13_S_contig1.4.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1 24693..25155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1.4.1

>prot_Ecto-sp13_S_contig1.4.1 ID=prot_Ecto-sp13_S_contig1.4.1|Name=mRNA_Ecto-sp13_S_contig1.4.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
MCVFRRCVLIGRHCTVTMPYPQRPLSGGQEDGSPQTSWSPGTLTHEFEVT
VKYLRREIRDLPDRDRETFLQRGVGAAARAQRRRVRDLRRQALQRGLLRP
AASLLRWVVS*
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mRNA from alignment at Ecto-sp13_S_contig1:24693..25155-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1.4.1 ID=mRNA_Ecto-sp13_S_contig1.4.1|Name=mRNA_Ecto-sp13_S_contig1.4.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=463bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1:24693..25155- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTGTTTTCCGCCGTTGCGTCCTGATCGGCCGCCATGTGAACCCCTT
TCACAGCACTTTCACGGCGCCACGCCCTCGATCTTAGCACGTCTGCTTTC
CGTCTGTTTGTTCTCCCTCCACGTTTTCCTTCGCTTGTTCGACCTGCAAA
AACCACGACACGACTGCAGTGCACGGTCACCATGCCCTACCCCCAGCGCC
CCCTTTCGGGAGGGCAAGAGGACGGCTCCCCGCAAACCTCCTGGTCTCCC
GGCACCTTGACCCACGAGTTCGAGGTGACCGTGAAGTACCTCCGGCGGGA
GATTCGGGACCTGCCGGACCGGGACCGTGAGACGTTTCTTCAACGCGGGG
TCGGTGCTGCAGCGCGTGCCCAGCGCCGTCGGGTGCGAGATCTACGGCGA
CAAGCACTACAGCGCGGACTACTTCGACCGGCTGCATCTTTGCTACGGTG
GGTAGTGTCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1:24693..25155-

>mRNA_Ecto-sp13_S_contig1.4.1 ID=mRNA_Ecto-sp13_S_contig1.4.1|Name=mRNA_Ecto-sp13_S_contig1.4.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1:24693..25155- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTGTTTTCCGCCGTTGCGTCCTGATCGGCCGCCATTGCACGGTCAC
CATGCCCTACCCCCAGCGCCCCCTTTCGGGAGGGCAAGAGGACGGCTCCC
CGCAAACCTCCTGGTCTCCCGGCACCTTGACCCACGAGTTCGAGGTGACC
GTGAAGTACCTCCGGCGGGAGATTCGGGACCTGCCGGACCGGGACCGTGA
GACGTTTCTTCAACGCGGGGTCGGTGCTGCAGCGCGTGCCCAGCGCCGTC
GGGTGCGAGATCTACGGCGACAAGCACTACAGCGCGGACTACTTCGACCG
GCTGCATCTTTGCTACGGTGGGTAGTGTCGTGA
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