mRNA_Ecto-sp13_S_contig18948.6000.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18948.6000.1
Unique NamemRNA_Ecto-sp13_S_contig18948.6000.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18948.6000.1 vs. uniprot
Match: D7FPB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB4_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 1.300e-51
Identity = 89/101 (88.12%), Postives = 92/101 (91.09%), Query Frame = 1 
Query:    1 MLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKHNIFLVVGFLNAGTISILGVVTLFMMFWPPLLADLVVVSGTSISCIVIIFVAVRITSFINRAMSE 303
            MLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKHNIFLVVG LNAG IS LGV TLFM FWPPLL DL V SG++I+CIVIIFVAVRITSFIN AMSE
Sbjct:    1 MLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKHNIFLVVGLLNAGIISTLGVGTLFMTFWPPLLVDLAVASGSAITCIVIIFVAVRITSFINCAMSE 101
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BLAST of mRNA_Ecto-sp13_S_contig18948.6000.1 vs. uniprot
Match: D7FVJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ6_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.150e-19
Identity = 47/99 (47.47%), Postives = 67/99 (67.68%), Query Frame = 1 
Query:    4 LFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKHNIFLVVGFLNAGTISILGVVTLFMMFWPPLLADLVVVSGTSISCIVIIFVAVRITSFINRAMS 300
            +F VAM+AE+W+ESLP Q+++P SFA  L   S   ++F+V+G  N G +S+LGV+T F   WP   ADL +V G   + +V+ FVA RIT+ IN+A S
Sbjct:   48 MFEVAMIAEYWVESLPSQILTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFARSWPQQAADLFIVGGVLTAELVVFFVASRITAVINQATS 146
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BLAST of mRNA_Ecto-sp13_S_contig18948.6000.1 vs. uniprot
Match: A0A6H5KVX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX1_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.980e-14
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:    4 LFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKHNIFLVVGFLNAGTISILGVVTLFMMFWPPLLADLVVVSG 228
            +F VAM+AE+W+ESLP Q+++P SFA  L   S   ++F+V+G  N G +S+LGV+T F   WP   AD+ VV G
Sbjct:   32 MFEVAMIAEYWVESLPSQILTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFARTWPQQAADIFVVGG 106
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BLAST of mRNA_Ecto-sp13_S_contig18948.6000.1 vs. uniprot
Match: A0A6H5JMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK0_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 4.070e-10
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:  181 MMFWPPLLADLVVVSGTSISCIVIIFVAVRITSFINRAMSE 303
            M FWPPLLADLVVVSG+ I+  VI FVAVRITSFINRAMSE
Sbjct:    1 MAFWPPLLADLVVVSGSCIAGTVIFFVAVRITSFINRAMSE 41
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BLAST of mRNA_Ecto-sp13_S_contig18948.6000.1 vs. uniprot
Match: A0A6H5KV07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV07_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 1.150e-5
Identity = 27/75 (36.00%), Postives = 42/75 (56.00%), Query Frame = 1 
Query:    7 FGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKHNIFLVVGFLNAGTISILGVVTLFMMFWPPLLADLVVVSGT 231
            F +  +A FW+  LP QL+   S+A  L   S + NI LV+G LNA T+S  G++T+   +   + AD  +  G+
Sbjct:   27 FAMMQVASFWVSGLPSQLLPAESYAARLKNASEQRNIILVLGTLNASTVSGSGILTILFPYSAKVAADTFMALGS 101
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18948.6000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FPB4_ECTSI1.300e-5188.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVJ6_ECTSI2.150e-1947.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVX1_9PHAE1.980e-1448.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMK0_9PHAE4.070e-1082.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV07_9PHAE1.150e-536.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18948contigEcto-sp13_S_contig18948:2517..3389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size303
Hectar predicted targeting categorysignal anchor
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462967.3826928-CDS-Ecto-sp13_S_contig18948:2516..27561681462967.3826928-CDS-Ecto-sp13_S_contig18948:2516..2756Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18948 2517..2756 +
1681462967.3939118-CDS-Ecto-sp13_S_contig18948:3326..33891681462967.3939118-CDS-Ecto-sp13_S_contig18948:3326..3389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18948 3327..3389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18948.6000.1prot_Ecto-sp13_S_contig18948.6000.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18948 2517..3389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18948.6000.1

>prot_Ecto-sp13_S_contig18948.6000.1 ID=prot_Ecto-sp13_S_contig18948.6000.1|Name=mRNA_Ecto-sp13_S_contig18948.6000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKHNIFLVVGFLNAGT
ISILGVVTLFMMFWPPLLADLVVVSGTSISCIVIIFVAVRITSFINRAMS
E
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mRNA from alignment at Ecto-sp13_S_contig18948:2517..3389+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18948.6000.1 ID=mRNA_Ecto-sp13_S_contig18948.6000.1|Name=mRNA_Ecto-sp13_S_contig18948.6000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18948:2517..3389+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGTTCGGCGTCGCCATGATGGCCGAGTTTTGGTTGGAGAGCTTACC
GCACCAGCTGGTTTCCCCTGGCAGCTTCGCGGAGTGGTTGACAAAGGTTT
CGCGCAAGCACAACATTTTCTTGGTTGTTGGGTTTCTCAACGCGGGGACT
ATATCGATCCTAGGTGTCGTGACACTGTTCATGATGTTCTGGCCTCCACT
GCTGGCCGATCTCGTAGTGGTGTCCGGGACCAGCATCTCGGTGAGGAACC
ATTGCTGTTGTCTACATCGCTTCCGATGTTTGTGTGTTCATCATCGCCAT
ATGTTGTTTAGCGTAAATCAGAACAACCGCATGCCGATGGCTACGCGTTC
TTATGTCGGGGAAGATATATGTCCTGACAAATAGAGCATGGAAGGGTTTG
AACTGTTAGACAACGGTCAGTTTGTTTGGTTTCAGGCACGCGCACACGCC
CAGCACCGACTCAGTGCAGCCACACAACCCGCAACTGTCGGGCCAACATG
GCCAAACAGGGAGAACGGACGGGCTGATCACGAAACAACTCGACAAAACA
ACACAACACATGTCAGGCGTATCTCTTCTTCGCTGAGGTTTTGATCGCCC
AACTGCGCACGGGTCCCTGACCCCGATGCCTAACTGGCATGCCTGCTGCG
GAAAAAGGGCACTATTGGTTGGTAGTGGTCAAAAGACTTTCTTGATGATG
CTGTGTCAGGTTTCAGGTTCGCTCTGAAAGCACTGACTTCCCCCACGCTC
TTGGCTGCCACCTTCGGACGTCGTAACACCCATTCCTGCACCAAACGTTG
GCACGACTAGTGCATAGTTATCATCTTCGTGGCTGTTCGGATCACAAGCT
TCATCAACCGCGCTATGTCAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18948:2517..3389+

>mRNA_Ecto-sp13_S_contig18948.6000.1 ID=mRNA_Ecto-sp13_S_contig18948.6000.1|Name=mRNA_Ecto-sp13_S_contig18948.6000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18948:2517..3389+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGTTCGGCGTCGCCATGATGGCCGAGTTTTGGTTGGAGAGCTTACC
GCACCAGCTGGTTTCCCCTGGCAGCTTCGCGGAGTGGTTGACAAAGGTTT
CGCGCAAGCACAACATTTTCTTGGTTGTTGGGTTTCTCAACGCGGGGACT
ATATCGATCCTAGGTGTCGTGACACTGTTCATGATGTTCTGGCCTCCACT
GCTGGCCGATCTCGTAGTGGTGTCCGGGACCAGCATCTCGTGCATAGTTA
TCATCTTCGTGGCTGTTCGGATCACAAGCTTCATCAACCGCGCTATGTCA
GAG
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