mRNA_Ecto-sp13_S_contig18947.5999.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18947.5999.1
Unique NamemRNA_Ecto-sp13_S_contig18947.5999.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18947.5999.1 vs. uniprot
Match: A0A6H5JC12_9PHAE (Rhodanese domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC12_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 4.770e-17
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = -2 
Query:  197 MEISLTRSKAAVSAVIVAALLTAWRVWQAGSRRRRRRSWGTTDNTARVLLLTAN 358
            ME SLTRSKAAVSAVIVAALLTAWRVWQAGSRRRRRRSW TTDNTARVLLLTA+
Sbjct:    1 METSLTRSKAAVSAVIVAALLTAWRVWQAGSRRRRRRSWRTTDNTARVLLLTAS 54
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BLAST of mRNA_Ecto-sp13_S_contig18947.5999.1 vs. uniprot
Match: A0A6H5JC31_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC31_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.250e-16
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 3 
Query:  789 DDLHGKHMNRTRIPCFWSRTGVWVSHARLLSLVMVLDLMILSVQV 923
            DDLHGKHMNRTRIPCFWSRTG+WVSHARLLSLVMVLDLMILSVQ+
Sbjct:   38 DDLHGKHMNRTRIPCFWSRTGIWVSHARLLSLVMVLDLMILSVQI 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18947.5999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JC12_9PHAE4.770e-1794.44Rhodanese domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JC31_9PHAE3.250e-1695.56MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18947contigEcto-sp13_S_contig18947:233..2798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1325
Hectar predicted targeting categoryother localisation
Exons2
Cds size666
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462967.2858114-UTR-Ecto-sp13_S_contig18947:232..4331681462967.2858114-UTR-Ecto-sp13_S_contig18947:232..433Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18947 233..433 +
1681462967.298372-UTR-Ecto-sp13_S_contig18947:1674..20631681462967.298372-UTR-Ecto-sp13_S_contig18947:1674..2063Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18947 1675..2063 +
1681462967.3507025-UTR-Ecto-sp13_S_contig18947:2729..27981681462967.3507025-UTR-Ecto-sp13_S_contig18947:2729..2798Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18947 2730..2798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462967.3154266-CDS-Ecto-sp13_S_contig18947:2063..27291681462967.3154266-CDS-Ecto-sp13_S_contig18947:2063..2729Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18947 2064..2729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18947.5999.1prot_Ecto-sp13_S_contig18947.5999.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18947 2064..2729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18947.5999.1

>prot_Ecto-sp13_S_contig18947.5999.1 ID=prot_Ecto-sp13_S_contig18947.5999.1|Name=mRNA_Ecto-sp13_S_contig18947.5999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=222bp
MLDNTAEEDPLLSIGGKSREDTASSASTSSMTNLDSDDHSHHHEQQQQQQ
QQRREMEVSLENDDDEDDLHGKHMNRTRIPCFWSRTGVWVSHARLLSLVM
VLDLMILSVQVCVICKVHQRAVFEPRDEFLLLPLLLCAPIPRDEKRYVQH
SSCRGNKGRTGRTESNRCAVISSELCVRISAYICICCCCPRPPVRQVSLL
QVLFERRCECKVCSYATAIGS*
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mRNA from alignment at Ecto-sp13_S_contig18947:233..2798+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18947.5999.1 ID=mRNA_Ecto-sp13_S_contig18947.5999.1|Name=mRNA_Ecto-sp13_S_contig18947.5999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2566bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18947:233..2798+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCTACAACACCCCAAAAGGATATCTACTGAACAGGAAATCGAAGAGAG
AATGAAGAGGGATCCAGAAGATCAACACAAATACGGCTTTGCTAAAAGTA
CTGCATGAATGAGCAATGCAGAAATGAAAGGCCTCAGGAAGCTACACCGC
GAAGTCAAACAGTCATCAAGACCCTAAACGGCGGAGAGATGGCACTATTA
GGTGAGCATTTTTTTTCTTGTTTTTTTCACAATATGAAGCAAAGATTCCA
TCTCTATCCGTAGCGTCAGCAAAGACTAACTACGTGTCGTTCCACGATTA
CCCAAGCCTTTTTTGTTTCGCACCCGGTTCCATCTCTTCCACCGGTGCCA
TCTCTCACCCGACCCCGGTGCGGAAATGAAAATGTAATTTTTTCGTTGTG
CATTTTTCATGGCACCCAGATGCGATCTCTCCGGCCGGTGCGACGCCCAA
TGAAAAACACAAAGCGGACCTATTGGTGCTCAGTGGTGTTGTATGCACGC
ACCCGGTGCCATCTCCCCGACCGGTGCCATTTCCCCGGCCGGTGCCATCT
CTCCACCTTTCACGGTACACGCGTGAATACGCATCGGGCACGCGAGGCGC
ACTGGGCTGCTGAAGTCACGCGAAGAAATCAACTCGGGCTGCAGCTGCCA
TCTTCACGACAGCCTAGTGCGTGGAATGCTTAACTTGTCTGAACCCAATC
ACCGGCCACAGGGTCAACCCTGCACCAAGGGTCTTATTCATCGCACAGGC
ACACTGGGCGAAAGAATGTTATGGGAGATCCTTCAAGTATAAAATGTATC
CTTCGGTTAGGTCGAGTCGCCGCTTGAATCGTGCATGTTTTATCGTCCGT
TTCCGTCGATTGGGGATCAGACAAGCAAACATTCCACGCACCGACTAGGC
TGCCGCGAGGATGGCCGTGGCAGACCGAGTTCATTCTCCTCCCCCCGTAC
TGCGATCATCTCATCTTATGCGGAGGAACCCCCCACCGTACTTGATTGAC
CGTTGTAAGATAACGCCGATTACTGACCGTTGTACGCTGCATGCATGCGT
TTGTACATGTACTGAATTGTGCCGCAAAACCAGCACGAAAGCACGAAAGC
CATAGAGGAAGGAAGAAACACACACAGCCATCACGTCATCACCACCACGC
GCCAAGGTTCCCACGCAATATCGGTTCGCAATCTGATGCAGGGGGGTGGC
GAAAGGGAAGAACGTGCAGACAGAACGTAAATGCGTGCTTGCGTGCGATG
CTGTGTGTCACAGACTTTGACATCGTATCCTGCCGATTGGGGCTCTTCTC
GCCCGAGGTATCAAAACAAATGCACGTCCCATCCACACCATATGACACGC
ATCTCAGCAACGACTTTCTCTTCTGCCTGCCCATCTACCCGTCTTCGTAC
CACCCTCTGCTGTCTGAACTCTCACCTTTCCGTTATCGCTAGCTGTAAGG
AGGAGCACCCTCGCGGTGTTGTCAGTAGTCCCCCAGCTGCGGCGGCGGCG
GCGACGGCTCCCCGCCTGCCAAACGCGCCAGGCCGTGAGCAAAGCGGCCA
CGATGACAGCAGAGACGGCGGCCTTTGACCTCGTTAACGAAATCTCCATG
TCACTCTACGGCACTTGTGATGGTGCTCTGCTGTTTGGCGCCGTGCCTGG
ATCGCGCGGTGCTGTGTGTCTCTGTCTCCCTGCTCCTATTCTCACACAGT
CTCTGCAGGAACGAGCACACCCCAACAGAATCCGTTCTGCGTGTGCCCTG
TAAAGACACCCCGTGTCAAGACACCAGACACACACGCACCGCCGCAACAG
CAGCAGCAGCAGGAGCGGCAGAGTAAATGGAATGTTGGACAACACTGCCG
AGGAAGACCCACTCCTCTCCATTGGAGGAAAAAGCAGAGAGGACACCGCG
AGCAGCGCAAGCACCAGTAGCATGACCAACCTCGACTCCGACGACCACAG
TCATCACCACGAGCAGCAGCAGCAGCAGCAGCAGCAGCGACGAGAGATGG
AAGTATCCTTGGAAAACGATGACGACGAAGACGACCTTCATGGAAAGCAC
ATGAACAGAACGAGAATCCCGTGCTTCTGGTCGAGGACTGGAGTCTGGGT
CAGCCATGCCAGGCTCCTCTCGCTGGTGATGGTGTTAGATCTCATGATAC
TGAGCGTTCAGGTATGTGTAATATGTAAAGTACATCAAAGAGCAGTGTTT
GAGCCGCGTGATGAGTTCCTGCTGCTGCCACTTCTTCTTTGCGCACCAAT
ACCACGCGACGAGAAGAGGTATGTACAACACAGCAGTTGTAGGGGTAACA
AGGGTCGCACCGGCCGAACGGAGAGCAACCGTTGTGCAGTCATCTCCTCC
GAACTCTGTGTGCGTATTTCGGCCTACATATGTATATGCTGCTGTTGTCC
CAGGCCGCCCGTAAGGCAAGTTTCACTTCTTCAGGTCCTTTTTGAGAGGC
GGTGCGAGTGTAAGGTCTGCAGCTATGCAACCGCAATAGGTAGCTGAAGT
GCCGCCACATCATTTATTTCATTGTGCCGCCTCTGCTGCCCCTTTTCGTG
TCCAGGTTGATCAACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18947:233..2798+

>mRNA_Ecto-sp13_S_contig18947.5999.1 ID=mRNA_Ecto-sp13_S_contig18947.5999.1|Name=mRNA_Ecto-sp13_S_contig18947.5999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18947:233..2798+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGGACAACACTGCCGAGGAAGACCCACTCCTCTCCATTGGAGGAAA
AAGCAGAGAGGACACCGCGAGCAGCGCAAGCACCAGTAGCATGACCAACC
TCGACTCCGACGACCACAGTCATCACCACGAGCAGCAGCAGCAGCAGCAG
CAGCAGCGACGAGAGATGGAAGTATCCTTGGAAAACGATGACGACGAAGA
CGACCTTCATGGAAAGCACATGAACAGAACGAGAATCCCGTGCTTCTGGT
CGAGGACTGGAGTCTGGGTCAGCCATGCCAGGCTCCTCTCGCTGGTGATG
GTGTTAGATCTCATGATACTGAGCGTTCAGGTATGTGTAATATGTAAAGT
ACATCAAAGAGCAGTGTTTGAGCCGCGTGATGAGTTCCTGCTGCTGCCAC
TTCTTCTTTGCGCACCAATACCACGCGACGAGAAGAGGTATGTACAACAC
AGCAGTTGTAGGGGTAACAAGGGTCGCACCGGCCGAACGGAGAGCAACCG
TTGTGCAGTCATCTCCTCCGAACTCTGTGTGCGTATTTCGGCCTACATAT
GTATATGCTGCTGTTGTCCCAGGCCGCCCGTAAGGCAAGTTTCACTTCTT
CAGGTCCTTTTTGAGAGGCGGTGCGAGTGTAAGGTCTGCAGCTATGCAAC
CGCAATAGGTAGCTGA
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