prot_Ecto-sp13_S_contig1894.5995.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig1894.5995.1
Unique Name	prot_Ecto-sp13_S_contig1894.5995.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	200

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1894.5995.1 vs. uniprot
Match: D7G736_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G736_ECTSI)

HSP 1 Score: 325 bits (833), Expect = 9.930e-110
Identity = 158/178 (88.76%), Postives = 166/178 (93.26%), Query Frame = 0

Query:    1 MGCCSVTAPDLALQAATSRFLKPGPFAAFKGLFVAYFLTWCFLWPLEYSSMYLFATYWVWYTAAAYFALSFATACTHFRRWSAATQAEAPERGSTGGGSDRPAPSWSNLAGDISTPALRTRIHPFEQAVLAMQLFTWNVACLGSVFVAIIYWSSLYTGTPITSVDMNAHTLIVFVMVS 178
            MGCCSVTAPDLAL+AATSRFLKPGPF AFKGLFVAYFL WCFLWPL+Y+SMYLFATYWVWYT  AYFALSFATAC HFRRWSAATQA AP+ GS GGGSDRP PSWSNL GD+STPALRTRIHP EQAVLA+QLFTWNVACLGS+FVAIIYWSSLYTGTPITSVDMNAHTLI FVMV+
Sbjct:    1 MGCCSVTAPDLALRAATSRFLKPGPFVAFKGLFVAYFLIWCFLWPLDYTSMYLFATYWVWYTGTAYFALSFATACAHFRRWSAATQARAPDNGSAGGGSDRPGPSWSNLTGDVSTPALRTRIHPLEQAVLAIQLFTWNVACLGSLFVAIIYWSSLYTGTPITSVDMNAHTLIAFVMVA 178

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BLAST of mRNA_Ecto-sp13_S_contig1894.5995.1 vs. uniprot
Match: A0A6H5JMZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ5_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 6.310e-22
Identity = 65/176 (36.93%), Postives = 91/176 (51.70%), Query Frame = 0

Query:    9 PDLALQAATSRFLKPGPFAAFKGLFVAYFLTWCFLWPL--EYSSMYLFATYWVWYTAAAYFALSFATACTHFRRWSAA------TQAEAPERGSTGGGSDRPAPSWSNLAGDISTPALRTRIHPFEQAVLAMQLFTWNVACLGSVFVAIIYWSSLYTGTPITSVDMNAHTLIVFVM 176
            P+  ++A TSRFL    F  +K +   YF+ WC+ WP   +    + F TYW WY AA YF +S ATA +      A+      T A AP RG      +R  P  SN                  +A+L  Q+F+WNVAC+GS+ +  ++W +L+  TP+TS D+NAH LI  VM
Sbjct:   15 PNDPVRAVTSRFLSQRSFLCYKVIATIYFVFWCYFWPFGEDIDDAHKFVTYWGWYMAAIYFLVSTATAYSFLGSPMASDGPVRGTHAVAPHRG------NRNQPLSSN-----------------RRALLGFQVFSWNVACVGSLVIVTVFWVALFDNTPLTSTDVNAHILIAPVM 167

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BLAST of mRNA_Ecto-sp13_S_contig1894.5995.1 vs. uniprot
Match: D7G735_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G735_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 3.430e-8
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 0

Query:  115 TPALRTRIHPFE---QAVLAMQLFTWNVACLGSVFVAIIYWSSLYTGTPITSVDMNAHTLIVFVM 176
            TP    R  P     +A+L  Q+F+WNVAC+GS+ +  ++W +L+  TP+TS D+NAH LI  +M
Sbjct:   14 TPHRGNRNQPLSSNRRALLGFQVFSWNVACVGSLVIVTVFWVALFDNTPLTSTDVNAHILIAPIM 78

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1894.5995.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1894.5995.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7G736_ECTSI	9.930e-110	88.76	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A6H5JMZ5_9PHAE	6.310e-22	36.93	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G735_ECTSI	3.430e-8	43.08	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039860	Protein rolling stone	PANTHER	PTHR12242:SF1	LD06593P-RELATED	coord: 23..178
None	No IPR available	PANTHER	PTHR12242	UNCHARACTERIZED	coord: 23..178
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 171..190
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 58..78
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 191..199
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 152..170
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 27..46
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 79..127
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 47..57
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..26
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 128..151
None	No IPR available	TMHMM	TMhelix		coord: 134..156
None	No IPR available	TMHMM	TMhelix		coord: 171..193
None	No IPR available	TMHMM	TMhelix		coord: 56..78
None	No IPR available	TMHMM	TMhelix		coord: 24..46

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1894	contig	Ecto-sp13_S_contig1894:175..4134 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1894.5995.1	mRNA_Ecto-sp13_S_contig1894.5995.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig1894 2..4320 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig1894.5995.1 ID=prot_Ecto-sp13_S_contig1894.5995.1|Name=mRNA_Ecto-sp13_S_contig1894.5995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp
MGCCSVTAPDLALQAATSRFLKPGPFAAFKGLFVAYFLTWCFLWPLEYSS
MYLFATYWVWYTAAAYFALSFATACTHFRRWSAATQAEAPERGSTGGGSD
RPAPSWSNLAGDISTPALRTRIHPFEQAVLAMQLFTWNVACLGSVFVAII
YWSSLYTGTPITSVDMNAHTLIVFVMVSSIFRSNVCVFYLSQLTSAPFV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR039860	Rost