mRNA_Ecto-sp13_S_contig1894.5995.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1894.5995.1
Unique NamemRNA_Ecto-sp13_S_contig1894.5995.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1894.5995.1 vs. uniprot
Match: D7G736_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G736_ECTSI)

HSP 1 Score: 325 bits (832), Expect = 1.330e-107
Identity = 158/178 (88.76%), Postives = 166/178 (93.26%), Query Frame = 1 
Query:  187 MGCCSVTAPDLALQAATSRFLKPGPFAAFKGLFVAYFLTWCFLWPLEYSSMYLFATYWVWYTAAAYFALSFATACTHFRRWSAATQAEAPERGSTGGGSDRPAPSWSNLAGDISTPALRTRIHPFEQAVLAMQLFTWNVACLGSVFVAIIYWSSLYTGTPITSVDMNAHTLIVFVMVS 720
            MGCCSVTAPDLAL+AATSRFLKPGPF AFKGLFVAYFL WCFLWPL+Y+SMYLFATYWVWYT  AYFALSFATAC HFRRWSAATQA AP+ GS GGGSDRP PSWSNL GD+STPALRTRIHP EQAVLA+QLFTWNVACLGS+FVAIIYWSSLYTGTPITSVDMNAHTLI FVMV+
Sbjct:    1 MGCCSVTAPDLALRAATSRFLKPGPFVAFKGLFVAYFLIWCFLWPLDYTSMYLFATYWVWYTGTAYFALSFATACAHFRRWSAATQARAPDNGSAGGGSDRPGPSWSNLTGDVSTPALRTRIHPLEQAVLAIQLFTWNVACLGSLFVAIIYWSSLYTGTPITSVDMNAHTLIAFVMVA 178
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BLAST of mRNA_Ecto-sp13_S_contig1894.5995.1 vs. uniprot
Match: A0A6H5JMZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ5_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.980e-20
Identity = 65/176 (36.93%), Postives = 91/176 (51.70%), Query Frame = 1 
Query:  211 PDLALQAATSRFLKPGPFAAFKGLFVAYFLTWCFLWPL--EYSSMYLFATYWVWYTAAAYFALSFATACTHFRRWSAA------TQAEAPERGSTGGGSDRPAPSWSNLAGDISTPALRTRIHPFEQAVLAMQLFTWNVACLGSVFVAIIYWSSLYTGTPITSVDMNAHTLIVFVM 714
            P+  ++A TSRFL    F  +K +   YF+ WC+ WP   +    + F TYW WY AA YF +S ATA +      A+      T A AP RG      +R  P  SN                  +A+L  Q+F+WNVAC+GS+ +  ++W +L+  TP+TS D+NAH LI  VM
Sbjct:   15 PNDPVRAVTSRFLSQRSFLCYKVIATIYFVFWCYFWPFGEDIDDAHKFVTYWGWYMAAIYFLVSTATAYSFLGSPMASDGPVRGTHAVAPHRG------NRNQPLSSN-----------------RRALLGFQVFSWNVACVGSLVIVTVFWVALFDNTPLTSTDVNAHILIAPVM 167
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BLAST of mRNA_Ecto-sp13_S_contig1894.5995.1 vs. uniprot
Match: D7G735_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G735_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.510e-7
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:  529 TPALRTRIHPFE---QAVLAMQLFTWNVACLGSVFVAIIYWSSLYTGTPITSVDMNAHTLIVFVM 714
            TP    R  P     +A+L  Q+F+WNVAC+GS+ +  ++W +L+  TP+TS D+NAH LI  +M
Sbjct:   14 TPHRGNRNQPLSSNRRALLGFQVFSWNVACVGSLVIVTVFWVALFDNTPLTSTDVNAHILIAPIM 78
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1894.5995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G736_ECTSI1.330e-10788.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JMZ5_9PHAE1.980e-2036.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G735_ECTSI1.510e-743.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1894contigEcto-sp13_S_contig1894:2..4320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size959
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_011180.1
Cds size600
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1894.5995.1prot_Ecto-sp13_S_contig1894.5995.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1894 175..4134 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462966.9131517-UTR-Ecto-sp13_S_contig1894:1..1741681462966.9131517-UTR-Ecto-sp13_S_contig1894:1..174Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1894 2..174 -
1681462966.9725308-UTR-Ecto-sp13_S_contig1894:4134..43201681462966.9725308-UTR-Ecto-sp13_S_contig1894:4134..4320Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1894 4135..4320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462966.92483-CDS-Ecto-sp13_S_contig1894:174..3091681462966.92483-CDS-Ecto-sp13_S_contig1894:174..309Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1894 175..309 -
1681462966.9339435-CDS-Ecto-sp13_S_contig1894:1277..15461681462966.9339435-CDS-Ecto-sp13_S_contig1894:1277..1546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1894 1278..1546 -
1681462966.94298-CDS-Ecto-sp13_S_contig1894:2201..23071681462966.94298-CDS-Ecto-sp13_S_contig1894:2201..2307Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1894 2202..2307 -
1681462966.9529479-CDS-Ecto-sp13_S_contig1894:2901..29611681462966.9529479-CDS-Ecto-sp13_S_contig1894:2901..2961Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1894 2902..2961 -
1681462966.9626687-CDS-Ecto-sp13_S_contig1894:4104..41341681462966.9626687-CDS-Ecto-sp13_S_contig1894:4104..4134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1894 4105..4134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1894.5995.1

>prot_Ecto-sp13_S_contig1894.5995.1 ID=prot_Ecto-sp13_S_contig1894.5995.1|Name=mRNA_Ecto-sp13_S_contig1894.5995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp
MGCCSVTAPDLALQAATSRFLKPGPFAAFKGLFVAYFLTWCFLWPLEYSS
MYLFATYWVWYTAAAYFALSFATACTHFRRWSAATQAEAPERGSTGGGSD
RPAPSWSNLAGDISTPALRTRIHPFEQAVLAMQLFTWNVACLGSVFVAII
YWSSLYTGTPITSVDMNAHTLIVFVMVSSIFRSNVCVFYLSQLTSAPFV*
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mRNA from alignment at Ecto-sp13_S_contig1894:2..4320-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1894.5995.1 ID=mRNA_Ecto-sp13_S_contig1894.5995.1|Name=mRNA_Ecto-sp13_S_contig1894.5995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4319bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1894:2..4320- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGAAGCGATCACATCCATTCGAATATGCGGAGCCCCTTAACAGAGTGA
GCCACAGCTGTATGGTTTATCCCTCGGTGCATGACTGACGATCTTCACTT
TTGGCTGTCTTCAGAGAGGCGTGCGCACCACGTGTGGAGAGCGGAGGATT
CGCTAGAGTGCCGTGCAGGAGCAGCGTTCCTGCATTATGGGATGCTGCTC
GGTTACTGCGCCGGATGTGAGTCGAACGTGCGCAAAGGAGGACAGAAGTA
GCGGGCCGCCAGACAACAGAGTGCGCCAGGCTCGTTTATCGTCTTTGCAG
CGAAACAATGAACAAACCGATGTCGCGTATAGATACCTTGCATCTCTGTG
AAGTCAACAGCAAACGCGTTTCTTCGACGTCTTGATTTTCACAGGTGGAC
TCGTGACCTAAAAAACGGAAACTCAAGAGAGTGGTGTGTAGGACGGTTTT
GTCGCATCACGTATAACATGCGTGCTTGTGACCATGCCTTCTCTGCCGTT
TTTATGGGAAAGCAGTAATGTAGATGCCCAGCACTGCTGTCCTGTCTACC
TTCTACAAGGCGAGCTACAGCAGCAGCATCCGTGTATTCCACTCCTCCGC
TGGCGTGCGAACGGTACAATAGAAAGGCGGTCAAGCGACGCGTGTGAAAT
GCTTGCTGCTGCTCGGTGTTCTCCCTTCATACCATATCCGTGCCAAGATG
GAGAAGCTCCGCCTGCTGCCTCGTCGCGCGTGTTGAGAAAGAAAGCCTAC
GACCTCTTTCCGAGCCATCTGTAGAGGCGCTGACCTTGCCTTTTTGCGCA
GGAGGCGTTGGTTTTGCGTTCTCGGCGCACGCTCTCTACTGCTGTCGTTG
TAAGAGCGCACGCAAGGCGCCTACTCGCGACTTGAAAGCAGTCCGGCCCT
GCGACTCTGGACGACACTGCTGTTGTCCGTTTTTAGACTAAATGGAAAAG
CGCTACTGGACCGGTTTTAGAAGCTTGAGAGTTCTCCACCGCAGTAGTGA
AGAAGATGCCAAATTCAAATGATACGTCAAGTGATACGTCTTTGGAATGT
TCTCGACGAGACAGTTCCAACGCCGCCATTTGCGACACCGTCATGTATGC
TGCTCCAGAGTGATCCAGCTTTTACAAGATTGGCCCCACAAGGGGTGGTA
TCTTGTGCAACATTTCTGCGGAATTTTCTCGCAGCCACAAGCATCGCGAA
CAACCCTTCTTTCATTCTTAATATGTGGTGCACCAATACTGCCGTAGTTT
CGTTGTGCCTTCTCTTCTCGCGTTCGGCAGTAGGCTACCTCAAGTTTTGC
TTACAAATGGTCTTATACAAAACGTTTTTTGCTCGTTCTACCCGTCGCCT
CTGCTGAAGCTGGCTCTCCAAGCCGCGACGTCGCGATTCCTCAAGCCAGG
CCCCTTTGCAGCATTCAAGGTACGTGCTACATCGTGGGGAGGAACTTTCT
GCTGTGTCTACCTTACAGACCAATTTGAGGATTGGAGACGGTCGACGCAC
ATGTCAAAAGGGAGGAGCAAGTTCATGTGTCCTCGTACGTCGAGCCTGGC
GTGAAATAAAGTCGTGCTTCGTTCCTCGTTCCCTGCACCCTGCACTGACG
GCCACAGCAGCGTTTCGTGCGGTACAGTAGCACTACACAGCTAGTTGTGT
ACCCGGCACTGATCACTCCTTCAGCGGGTCCTAGACCCAGATAGGTTTAA
CAACAATGCGGAATTTTACTTGTCCATCTACCGCAGATCGGGTTTTCGGG
TCTCGGAGTTTTTGCCCCACTGCTGTTGTACGGGGCAAGAACTCTCAAGC
TCTACCCATACCTGAGGGTTGGAAGGGAAAACGATACAGTAGCTGGAGCC
CAGCCCAAGGGACTCTTAGCTGTACAGCAACCGAGTAACGTCTTCGATTA
GGTCCTTCTTTCTGTTGAAACTGGAAACCCATTCTGCATCCCCCCCTCCC
CCTCCCGCACCCTGCGGAATCCGATGTCGTCCTTGCCCGGCCCGGCGACG
CTCCTGTGTGCAGGGACTGTTCGTGGCTTATTTCCTAACTTGGTGCTTCC
TGTGGCCTTTGGAATACAGCAGCATGTACTTGTTCGCCACTTACTGGGTG
TGGTACACGGCAGCTGCATGTAAGTGCGATGCTGCTGTTGACTCTCTCTT
TTACCTATAGCTGTACGGCGATTGCTTTCCGGTTTTTAGTTTACACTTCA
GCCCCATTTGGGTTTCTTGACGTCTGCCTGTCTGTGCGTCCCGTCCGTCT
TGTCCCTGTGTTGGGTTCTTTCGAATAGTCAGCGTTTTCGCCCGTTTTTT
TAACAGATGGTCGGGTACCAACCCAGCGTAGAGGAACCTCACTTCTCCCT
TCATACGTTTTGGGTAGCACCGAGACAAAAGGCGGTGTCAGCAACAGAGG
GCGAACGAGAGCGAACATTCCTCTTGGTTGCTGTTTCACCTCAAACATTT
TCGCCCGGCTTAGAGGCCGAGAAAAGTGGGTCTCCAATGTGGCCTTGTTT
CCGCGGGGAGCGGACCAGTGGCGACAAAGGATGATGCTTCCCCCTGATGA
CACTCATCGACGACGCGACAGAGATGTGGCCAACATCATCTAACAAGATT
TGGCCAGAAGCACCATCTGCAGCGTTGATCAGATCAGCGACTGTCTTTGT
GCACCCCGCAGACCGATTTCACTACAATTTTGCAGCAGTGACACTCACGA
TGATCCGCTCACCGTACCCGCCACTGACCAACGAGGGCGAACCCGACCCA
TCTTTTTGTCCCCCCCGCTCGCAGACTTCGCCCTTTCGTTCGCCACCGCG
TGCACACACTTCAGACGATGGTCCGCGGCCACACAAGCAGAGGCGCCCGA
GCGCGGGAGTACGGGGGGAGGAAGTGACCGGCCCGCGCCTTCGTGGAGCA
ACCTTGCCGGGGATATTTCGACGCCGGCGCTGCGCACGCGGATTCACCCC
TTCGAGCAGGCAGTGTTAGCGATGCAGCTTTTTACCTGGAACGTCGCTTG
CCTTGGGTCGGTGTTCGTCGCTATCATATACTGGAGCTCTCTGGTGAGAT
GAGAAGCCAACCGAAATCGCAACTCTCACGGTCCCGGGAAGGCGGGAGGC
GTTTCCTAACGCGGAGTACAAGAGATGGCCTCCCATGAGTTTGGACCCAG
TCGAGGATGGCGTACTGTAGATCGACTCTTGCACCGAGGAAGTAAAGTAC
CAAAGCAAGTGACGCGTCAGCGCGAACAAGTCCGCGTTCCACTAACCCCA
GCACCTAGAGGTTTGAACCTTGGGCTAAATATACCACGAGTGGATTTTTT
CTCTACCCTTGTCTTTGTGCCCTCTGATTTTGTGGTTCTCCCCGCCAATG
GGGCGCCCGTGTGGGTGGGCGGCTGCAGGCCCGATTTGTTTTGTGTTTCT
CTCAATGAGACGTTTGGGATTGGGCGTTCGGGGTCGAAGGGGGTACTGTA
TGACAGGGGGGATCAAATACAGATGGCCAAGGCACACTACAATAGACTGA
CTGGCAGACAGGCGGAAAGGCCACAGGGTTAGGCGACTCCTTTTGAGTTT
TGAAGCCACACGCTCGCTGCAGAGCGCAACCATCGAGAATGCGCCTTCGG
GGAATCTTCGATCACTAGAGGAGCACGACAGCAGTAGTGGAGCGTAGATG
CTGTCCTTGTCAAGAGCGTGGTGGGCGCAATTCGAGCGCCCGTCTTGTCG
CAGTGCAACGACACTGGTCTGATGGTATGCATTCTCCCAACGTTGCTCAC
TAGTTTTTGGGACCCCCATGACCGGTGTCGAAACGCCTGGCGTGGGGAGG
ATGACAGCGTTTGTTATTCCGTCAAGATTTCGTGTACCCACCTGGCTGAG
GGTCGTGCTTTGTCACGATTGTGTCAACGCCCCCGATTGCAACGAGATAC
GTAAGCAATGAGTCCCCTCCGCGATTCATGGTTTTTTCGTCGGTCCCTGA
TCCTTCTTAACCTTGTTTCCGCGATCGTGCGTGGCGTTGCCTGCTTTGTA
TGTTGCCGCAGTACACCGGGACACCTATCACATCAGTGGACATGAACGCA
CACACCCTCATTGTTTTCGTCATGGTGAGCTCAATTTTCCGTTCGAACGT
TTGTGTCTTTTACCTTTCCCAGCTGACATCGGCGCCGTTTGTGTGATTTA
GTTGCCCATGTATGTCTCGCCGCGGAAGTACACGCGGCGGCAGGCCCCAT
CACATGTGGTACAGTCGTCCCTCAGTGAAGGACACACATTGTTTTTCGGT
ATAACAGGTTTCCTTTAGCCGGGGAAGTGTCCTTGAGATTGATGCACCCT
CTTCCGTTACACATGTTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1894:2..4320-

>mRNA_Ecto-sp13_S_contig1894.5995.1 ID=mRNA_Ecto-sp13_S_contig1894.5995.1|Name=mRNA_Ecto-sp13_S_contig1894.5995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1894:2..4320- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGATGCTGCTCGGTTACTGCGCCGGATCTGGCTCTCCAAGCCGCGAC
GTCGCGATTCCTCAAGCCAGGCCCCTTTGCAGCATTCAAGGGACTGTTCG
TGGCTTATTTCCTAACTTGGTGCTTCCTGTGGCCTTTGGAATACAGCAGC
ATGTACTTGTTCGCCACTTACTGGGTGTGGTACACGGCAGCTGCATACTT
CGCCCTTTCGTTCGCCACCGCGTGCACACACTTCAGACGATGGTCCGCGG
CCACACAAGCAGAGGCGCCCGAGCGCGGGAGTACGGGGGGAGGAAGTGAC
CGGCCCGCGCCTTCGTGGAGCAACCTTGCCGGGGATATTTCGACGCCGGC
GCTGCGCACGCGGATTCACCCCTTCGAGCAGGCAGTGTTAGCGATGCAGC
TTTTTACCTGGAACGTCGCTTGCCTTGGGTCGGTGTTCGTCGCTATCATA
TACTGGAGCTCTCTGTACACCGGGACACCTATCACATCAGTGGACATGAA
CGCACACACCCTCATTGTTTTCGTCATGGTGAGCTCAATTTTCCGTTCGA
ACGTTTGTGTCTTTTACCTTTCCCAGCTGACATCGGCGCCGTTTGTGTGA
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