mRNA_Ecto-sp13_S_contig18932.5993.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18932.5993.1
Unique NamemRNA_Ecto-sp13_S_contig18932.5993.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18932.5993.1 vs. uniprot
Match: A0A6H5KEK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK5_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 3.640e-50
Identity = 120/149 (80.54%), Postives = 127/149 (85.23%), Query Frame = -2 
Query:    3 RDRGGNGCEDDCSGSXXXXXXXXXXXGGFPQSTRLAGQAPGFTGAETKLPDAVVTSFGRGPVPPGDDAAGAAPAIAAGTAAASSLPFPVFVDANPLPPAGNPRNRGTTAAFSTPAEQALEEELPXXXXXXXXGAVVVSPSSRRRGGELS 449
            RDRGG+  +DDCSG XXXXXXXXXXX GFP+S  +AG APGF  AE KLP AVV  FGRGP PPGDDAAGA P +AAGTAAASSLPFPVFVDANP PPAG PRNRG TAAFS PAE+ALEEELPXXXXXXXX  VV+SPSSRRRGGELS
Sbjct:  309 RDRGGDRSKDDCSGXXXXXXXXXXXXXGFPRSMPMAGHAPGFARAEKKLPGAVVRVFGRGPAPPGDDAAGATPEVAAGTAAASSLPFPVFVDANP-PPAGKPRNRGATAAFSAPAEKALEEELPXXXXXXXXXXVVMSPSSRRRGGELS 456
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18932.5993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KEK5_9PHAE3.640e-5080.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18932contigEcto-sp13_S_contig18932:1952..2401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size450
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_001580.1
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462966.8051376-CDS-Ecto-sp13_S_contig18932:1951..23111681462966.8051376-CDS-Ecto-sp13_S_contig18932:1951..2311Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18932 1952..2311 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462966.8150923-UTR-Ecto-sp13_S_contig18932:2311..24011681462966.8150923-UTR-Ecto-sp13_S_contig18932:2311..2401Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18932 2312..2401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18932.5993.1prot_Ecto-sp13_S_contig18932.5993.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18932 1952..2311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18932.5993.1

>prot_Ecto-sp13_S_contig18932.5993.1 ID=prot_Ecto-sp13_S_contig18932.5993.1|Name=mRNA_Ecto-sp13_S_contig18932.5993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp
MESSPPRLREDGDTTTAPAAGAGSGSGSSSSSACSAGVEKAAVVPRFRGF
PAGGSGLASTNTGNGNDDAAAVPAAIAGAAPAASSPGGTGPRPKDVTTAS
GSFVSAPVNPGACPANRVD*
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mRNA from alignment at Ecto-sp13_S_contig18932:1952..2401+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18932.5993.1 ID=mRNA_Ecto-sp13_S_contig18932.5993.1|Name=mRNA_Ecto-sp13_S_contig18932.5993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18932:1952..2401+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAAGCTCTCCTCCGCGCCTGCGCGAGGACGGCGACACAACAACCGC
CCCCGCTGCGGGCGCAGGCAGCGGCAGCGGGAGCTCCTCCTCTAGCGCTT
GCTCTGCGGGTGTCGAGAAAGCGGCAGTTGTGCCGCGGTTCCGGGGGTTT
CCGGCGGGAGGAAGCGGGTTGGCGTCTACGAACACCGGGAACGGCAACGA
CGATGCCGCCGCCGTGCCTGCCGCTATTGCCGGCGCGGCACCAGCGGCAT
CATCTCCCGGAGGCACAGGACCACGCCCGAAAGACGTCACGACGGCATCT
GGCAGTTTCGTCTCCGCTCCGGTGAACCCCGGAGCTTGTCCCGCCAATCG
CGTCGACTGAGGAAAGCCACCGCCGCCACCAGCAGACGCATCATCGCTGC
CGCCGCTGCCGCTGCAGTCGTCCTCGCACCCATTACCGCCGCGGTCCCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18932:1952..2401+

>mRNA_Ecto-sp13_S_contig18932.5993.1 ID=mRNA_Ecto-sp13_S_contig18932.5993.1|Name=mRNA_Ecto-sp13_S_contig18932.5993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18932:1952..2401+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAAGCTCTCCTCCGCGCCTGCGCGAGGACGGCGACACAACAACCGC
CCCCGCTGCGGGCGCAGGCAGCGGCAGCGGGAGCTCCTCCTCTAGCGCTT
GCTCTGCGGGTGTCGAGAAAGCGGCAGTTGTGCCGCGGTTCCGGGGGTTT
CCGGCGGGAGGAAGCGGGTTGGCGTCTACGAACACCGGGAACGGCAACGA
CGATGCCGCCGCCGTGCCTGCCGCTATTGCCGGCGCGGCACCAGCGGCAT
CATCTCCCGGAGGCACAGGACCACGCCCGAAAGACGTCACGACGGCATCT
GGCAGTTTCGTCTCCGCTCCGGTGAACCCCGGAGCTTGTCCCGCCAATCG
CGTCGACTGA
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