mRNA_Ecto-sp13_S_contig18932.5992.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18932.5992.1
Unique NamemRNA_Ecto-sp13_S_contig18932.5992.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18932.5992.1 vs. uniprot
Match: A0A6H5KEK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK5_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 3.920e-73
Identity = 241/279 (86.38%), Postives = 243/279 (87.10%), Query Frame = 1 
Query:  253 LMFDDNESSDGEGLDGHSVSRAGWLRPRTPAGATAGRGGGAGD------SSRQSLGSTWGGCSTIKRRPGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVADGVATEGSMHRGASVRDSRWGNGRKSXXXXXXXPYAVGEASVAGPVAAAIGCDGVTPLPAGRGGGPREAGAXXXXXXXXXXXXXXXXXGRGRRGGSAVGERVSGGRADYHSLCFSSXXXXXXXXATPHSSSLSASSPFPNLLDGSVDDSTSSTS 1071
            LMFD N+SSDGEGLDG+SVSRAGWLRPRTPAGATAGRG           SSRQS GSTWGGCSTIKRRP  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SVADG ATE SMH GA V DSRWGNGRKSXXXXXXXPYA GEASVA  VAAAIGCDGVTPLPA RGGGPRE G XXXXXXXXXXXXXXX  GRG RG SAVGERV GGRADYHSLCFSSXXXXXXXX   HSSSLSASSPFPNLLDG VDDSTSSTS
Sbjct:  637 LMFDGNDSSDGEGLDGYSVSRAGWLRPRTPAGATAGRGXXXXXXXXXXXSSRQSFGSTWGGCSTIKRRP-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVADGFATERSMHPGAGVGDSRWGNGRKSXXXXXXXPYAAGEASVARSVAAAIGCDGVTPLPAERGGGPREDGXXXXXXXXXXXXXXXXSAGRGGRGASAVGERVPGGRADYHSLCFSSXXXXXXXXXXXHSSSLSASSPFPNLLDGGVDDSTSSTS 914
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BLAST of mRNA_Ecto-sp13_S_contig18932.5992.1 vs. uniprot
Match: D7FZI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI8_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 3.160e-69
Identity = 191/277 (68.95%), Postives = 195/277 (70.40%), Query Frame = 1 
Query:  253 LMFDDNESSDGEGLDGHSVSRAGWLRPRTPAGATAGRGGGAGD--SSRQSLGSTWGGCSTIKRRPGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVADGVATEGSMHRGASVRDSRWGNGRKSXXXXXXXP----YAVGEASVAGPVAAAIGCDGVTPLPAGRGGGPREAGAXXXXXXXXXXXXXXXXXGRGRRGGSAVGERVSGGRADYHSLCFSSXXXXXXXXATPHSSSLSASSPFPNLLDGSVDDSTSS 1065
            LMFDDN+SSDGEGLDG+SVSRAGWLRPRTPAGAT GRG       SSRQSLGSTWGGCSTIKRRPGD                                          XXXXXXXX S  DG ATEGSM+ GA V  SRW NGRKSXXXXXXX     +AVGEASVA PVAA  GCDGVTPLPAGRGGGPREAGAXXXXXXXXXXXXXXX  GR  R G   GE VSGGRADYHSLCFSSXXXXXXXX  PHS SLSASSPF NLLDG  DDSTSS
Sbjct:   85 LMFDDNDSSDGEGLDGYSVSRAGWLRPRTPAGATNGRGXXXXXXXSSRQSLGSTWGGCSTIKRRPGDDDSGAGWSSARRRGALNTGLGHHHQDVEGEDSTRGVVGAERSXXXXXXXX-SGTDGFATEGSMYPGAGVGGSRWSNGRKSXXXXXXXXXXXSFAVGEASVARPVAATFGCDGVTPLPAGRGGGPREAGAXXXXXXXXXXXXXXXSAGREGRAGXXXGEGVSGGRADYHSLCFSSXXXXXXXXXXPHSGSLSASSPFLNLLDGG-DDSTSS 359
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18932.5992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KEK5_9PHAE3.920e-7386.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI8_ECTSI3.160e-6968.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18932contigEcto-sp13_S_contig18932:589..1662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1074
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_001570.1
Cds size1068
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462966.7687964-CDS-Ecto-sp13_S_contig18932:588..16561681462966.7687964-CDS-Ecto-sp13_S_contig18932:588..1656Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18932 589..1656 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462966.7805784-UTR-Ecto-sp13_S_contig18932:1656..16621681462966.7805784-UTR-Ecto-sp13_S_contig18932:1656..1662Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18932 1657..1662 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18932.5992.1prot_Ecto-sp13_S_contig18932.5992.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18932 589..1656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18932.5992.1

>prot_Ecto-sp13_S_contig18932.5992.1 ID=prot_Ecto-sp13_S_contig18932.5992.1|Name=mRNA_Ecto-sp13_S_contig18932.5992.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=356bp
MSAAARGGGESSGGAVMAAAPLGVSVRRKSTAAAAAGAGGLRLSRISEGG
GGENSRSTERIGGGSSGDGREDKAASDNMSSSLMFDDNESSDGEGLDGHS
VSRAGWLRPRTPAGATAGRGGGAGDSSRQSLGSTWGGCSTIKRRPGDDDS
GAGWSSARRRGAVSAGLGHHHQDEEGEGAARGVGGAERSSSGGGGGGGSV
ADGVATEGSMHRGASVRDSRWGNGRKSSSSGGGGPYAVGEASVAGPVAAA
IGCDGVTPLPAGRGGGPREAGAAARRGSSISSSGGGGSAGRGRRGGSAVG
ERVSGGRADYHSLCFSSSSSSSATTATPHSSSLSASSPFPNLLDGSVDDS
TSSTS*
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mRNA from alignment at Ecto-sp13_S_contig18932:589..1662-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18932.5992.1 ID=mRNA_Ecto-sp13_S_contig18932.5992.1|Name=mRNA_Ecto-sp13_S_contig18932.5992.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1074bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18932:589..1662- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGACGATGTCGGCGGCGGCGCGGGGAGGGGGGGAGAGTTCCGGCGGTGC
GGTGATGGCGGCAGCACCGCTGGGTGTGTCCGTGAGAAGAAAGAGCACCG
CGGCGGCGGCGGCGGGGGCCGGCGGCCTACGCCTGTCGCGCATTTCCGAG
GGAGGGGGCGGTGAAAATTCTCGCTCCACAGAGAGGATAGGCGGCGGCAG
CAGCGGTGACGGTCGGGAAGACAAAGCCGCGAGCGACAACATGTCCTCGT
CTTTGATGTTCGATGATAACGAAAGCAGCGACGGGGAAGGCCTGGACGGG
CACTCGGTATCGCGCGCGGGGTGGCTGAGGCCGCGTACGCCGGCCGGAGC
CACCGCCGGCCGCGGCGGCGGCGCGGGGGACTCCTCGCGGCAGTCGCTCG
GGAGCACGTGGGGCGGGTGCTCGACCATCAAGCGCCGACCCGGGGACGAT
GATTCTGGGGCTGGTTGGAGCTCCGCTCGCCGTCGTGGGGCGGTGAGCGC
GGGGCTCGGGCACCACCACCAAGATGAGGAGGGCGAAGGCGCCGCCCGCG
GAGTAGGAGGAGCTGAGAGAAGCAGCAGCGGTGGCGGCGGCGGAGGCGGA
AGCGTTGCGGACGGCGTCGCGACAGAGGGATCCATGCACCGGGGTGCCAG
TGTTCGCGACAGCAGGTGGGGCAACGGGAGGAAATCGTCGTCCTCTGGCG
GCGGCGGGCCGTATGCTGTGGGCGAGGCGTCCGTGGCCGGGCCTGTAGCC
GCTGCTATTGGCTGTGACGGCGTAACCCCGCTGCCTGCCGGGCGCGGTGG
GGGACCTCGGGAAGCCGGTGCGGCGGCAAGAAGAGGGAGTTCCATCTCTT
CCTCCGGCGGCGGGGGTTCCGCCGGGCGGGGGCGGAGGGGGGGCTCCGCG
GTCGGCGAGCGTGTGTCGGGAGGGCGCGCCGACTACCATTCGCTCTGCTT
CTCGAGCTCGTCCTCTAGTAGTGCCACCACCGCCACGCCGCACAGCAGCT
CGCTGTCGGCGTCGTCGCCGTTCCCGAACCTGCTGGACGGCAGCGTGGAC
GATTCGACTTCCTCTACGTCTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18932:589..1662-

>mRNA_Ecto-sp13_S_contig18932.5992.1 ID=mRNA_Ecto-sp13_S_contig18932.5992.1|Name=mRNA_Ecto-sp13_S_contig18932.5992.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1068bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18932:589..1662- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGCGGCGGCGCGGGGAGGGGGGGAGAGTTCCGGCGGTGCGGTGAT
GGCGGCAGCACCGCTGGGTGTGTCCGTGAGAAGAAAGAGCACCGCGGCGG
CGGCGGCGGGGGCCGGCGGCCTACGCCTGTCGCGCATTTCCGAGGGAGGG
GGCGGTGAAAATTCTCGCTCCACAGAGAGGATAGGCGGCGGCAGCAGCGG
TGACGGTCGGGAAGACAAAGCCGCGAGCGACAACATGTCCTCGTCTTTGA
TGTTCGATGATAACGAAAGCAGCGACGGGGAAGGCCTGGACGGGCACTCG
GTATCGCGCGCGGGGTGGCTGAGGCCGCGTACGCCGGCCGGAGCCACCGC
CGGCCGCGGCGGCGGCGCGGGGGACTCCTCGCGGCAGTCGCTCGGGAGCA
CGTGGGGCGGGTGCTCGACCATCAAGCGCCGACCCGGGGACGATGATTCT
GGGGCTGGTTGGAGCTCCGCTCGCCGTCGTGGGGCGGTGAGCGCGGGGCT
CGGGCACCACCACCAAGATGAGGAGGGCGAAGGCGCCGCCCGCGGAGTAG
GAGGAGCTGAGAGAAGCAGCAGCGGTGGCGGCGGCGGAGGCGGAAGCGTT
GCGGACGGCGTCGCGACAGAGGGATCCATGCACCGGGGTGCCAGTGTTCG
CGACAGCAGGTGGGGCAACGGGAGGAAATCGTCGTCCTCTGGCGGCGGCG
GGCCGTATGCTGTGGGCGAGGCGTCCGTGGCCGGGCCTGTAGCCGCTGCT
ATTGGCTGTGACGGCGTAACCCCGCTGCCTGCCGGGCGCGGTGGGGGACC
TCGGGAAGCCGGTGCGGCGGCAAGAAGAGGGAGTTCCATCTCTTCCTCCG
GCGGCGGGGGTTCCGCCGGGCGGGGGCGGAGGGGGGGCTCCGCGGTCGGC
GAGCGTGTGTCGGGAGGGCGCGCCGACTACCATTCGCTCTGCTTCTCGAG
CTCGTCCTCTAGTAGTGCCACCACCGCCACGCCGCACAGCAGCTCGCTGT
CGGCGTCGTCGCCGTTCCCGAACCTGCTGGACGGCAGCGTGGACGATTCG
ACTTCCTCTACGTCTTAG
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