mRNA_Ecto-sp13_S_contig18921.5988.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18921.5988.1
Unique NamemRNA_Ecto-sp13_S_contig18921.5988.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18921.5988.1 vs. uniprot
Match: D7FJN7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJN7_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 1.900e-63
Identity = 92/97 (94.85%), Postives = 96/97 (98.97%), Query Frame = 1 
Query:    1 VDLYIKSTRDCTAAQGPSCSLDAPCTPCGLDTLQGYIKASGGDANSNNATDGVSRCRSCGAGNSGACSFVLGEGPYCWKEPGSREVEPCSVCCTEPE 291
            V+LYIKSTRDCTAAQGPSCSL APCTPCGLDTL+GYIKASGGDANSNNATDGVSRCRSCGAGNSGAC+FV+GEGPYCWKEPGSREVEPCSVCCTEPE
Sbjct:  139 VNLYIKSTRDCTAAQGPSCSLAAPCTPCGLDTLEGYIKASGGDANSNNATDGVSRCRSCGAGNSGACNFVIGEGPYCWKEPGSREVEPCSVCCTEPE 235
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BLAST of mRNA_Ecto-sp13_S_contig18921.5988.1 vs. uniprot
Match: A0A836CP84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP84_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 9.170e-21
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:    1 VDLYIKSTRDCTAAQGPSCSLDAPCTPCGLDTLQGYIKASGGDANSNNATDGVSRCRSCGAGNSGACSFVLGEGPYCWKEPGSREVEPCSVCCTEP 288
            ++  + + RDC+A QG  CS  +PC PC    LQ +  A G DA          RCR CG+ N+G C F  GEGPYCW  PGS EV+PC++CC++P
Sbjct:  105 INRLLSAERDCSAGQGRVCSQRSPCLPCEPSKLQQWALA-GLDA---------PRCRRCGSSNAGNCRFREGEGPYCWVRPGSNEVQPCALCCSDP 190
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18921.5988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJN7_ECTSI1.900e-6394.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CP84_9STRA9.170e-2145.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18921contigEcto-sp13_S_contig18921:123..2192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score204.9
Seed ortholog evalue1.8e-50
Seed eggNOG ortholog2880.D7FJN7
Model size309
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2CAJ7@1,2STMA@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_000510.1
Cds size309
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462966.470001-CDS-Ecto-sp13_S_contig18921:122..3291681462966.470001-CDS-Ecto-sp13_S_contig18921:122..329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18921 123..329 -
1681462966.4838767-CDS-Ecto-sp13_S_contig18921:2090..21921681462966.4838767-CDS-Ecto-sp13_S_contig18921:2090..2192Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18921 2091..2192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18921.5988.1prot_Ecto-sp13_S_contig18921.5988.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18921 123..2192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18921.5988.1

>prot_Ecto-sp13_S_contig18921.5988.1 ID=prot_Ecto-sp13_S_contig18921.5988.1|Name=mRNA_Ecto-sp13_S_contig18921.5988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
VDLYIKSTRDCTAAQGPSCSLDAPCTPCGLDTLQGYIKASGGDANSNNAT
DGVSRCRSCGAGNSGACSFVLGEGPYCWKEPGSREVEPCSVCCTEPEVPI
YT*
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mRNA from alignment at Ecto-sp13_S_contig18921:123..2192-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18921.5988.1 ID=mRNA_Ecto-sp13_S_contig18921.5988.1|Name=mRNA_Ecto-sp13_S_contig18921.5988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2070bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18921:123..2192- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGACTTGTACATAAAGAGCACACGGGATTGCACCGCCGCTCAGGGTCC
GAGTTGCTCCTTGGACGCGCCATGCACCCCTTGCGGTCTCGACACGTTAC
AGGTAGGGGGTGTGGGGGGCGGGGTCGGGTGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGTTGGGCTTCCGTCGGGGGCACCACAGTTACGGCAACCGGT
GGGTGGGGGTTGTCGCCCACGTCGAAAGCGCTCCTGTTGCGTTACCCTCT
CTCTCTCTCTTTCTCTTTTTCTCTCTCTCTCTCTTACTCTGTCCCGCTCG
TTCTTTCTTTCTCTCTCTTTCTGTTCTCTATCTTATTGTTTCTCTCTCTC
TCTTTCTCTCTTTTTTTCTCTTTCTCTCTTATTTTCTCTTTCTCTCGCTA
TTCCTCTCTCCATATCCCTGTCTTGTTTATTTTGTCATCCCATTTGTCTA
GCCGTCGGTCTTTTGCAGCCGAAAATAGACCATTGTTGGTGTTGACAGGG
TAGCCTGCCATTTGATTCCGGCTCCTATATTATGTGTTTCAGTACAGCTT
CTGCATACCCTTGTAAAAGGCGAAGTCAGGGGGAAGGCCACACCGCAGAT
TTTACTTCGTCTTCCTTCTGCTGTGCTTGCCCTAGGTGACATGGGAGTGT
ACTCCTAGTGCCGCATACGGTACACACATCTCTCCAACTGCTGTCTATGT
CTCTTGCCTGTCGATCTGGCGCTTTCCTCGCCACGGAGGCCAACTCCTGC
GAGTGACTACAGAACGGGCCTGTCAACTATCAAGCATCAACTAGCATCAT
CCGGATTGGTCGAGACTCGATTTCTTATTCCGCAGATACCGTGGAGCACA
CCTTGCTGTTGTATGTATTCAATGGTTAGAGTTAGCTGCTGGAATCTACC
GCTGAGGTTTAGACTGCTAACCTCTGTTTCTTGGCAGATTTTCTCATATT
TTTACATGTTCGAGCCTCTTTTCGTCAACGGAGGGAATGTCTCTTTGTCG
CGGGCCCGTTCCGTCCAAGGTTTCGTGCAAGATTGAGCCCCTTACCTAAT
TCTTACCGTCAAGTAGTATGTTCATGGTTGCAGGGCCGGTTCCGAAGAAA
GCTCGTTTTGCAACGAAAAGCCGGAGGAGAAGACGAGGCCGTGATAGTCG
CGGAATCACAGCCGAAAACAGTCCATTCAAACCCAAAAGCACAACCTAGT
CTAGCCTAGCCTGTTGTTCACCTCGGCGCGCGGTGGGTCCTACACGACAC
ATCAACCGAGGACCTGCCGCCTGTGGTGTTGTTGGTCTCCACCCTGGGGC
ACGGGGACACACTACTTGCTGTATGACCACACGAACACGAGTCTCAGGAC
GCTACAAAAAATATTGGGTTTCATAGTGCAGAAGGAAGGGGGGTGGTTGC
TGACCCCTTTTGAAGATTCGAGGCAAAGCACAGCAGTCGTAGAGGAGAAG
TGGAGTCGGACACGAAGAAAGCACTCGTCGTGTGTTTATTTACCCTTCGC
TCCCCCTCTTTGTCTCAGCTGGCGCCTCAAATCGTACCAATCTTGTTATT
GTGCCGTATAGTCTATGCTACCGAAACGTGAAGATCGGAGCCCAAAACAC
ACGGACGGGAACAACTCGCGACGTCTTTTCCTTGCCAGCCACCTGTTGCA
GTAGCACCCGTGTTTGGTGCGGAGTTAATGACGCACGCAAGCACGAAACA
CACGAGGCAAACATGTTTCCCTCTCTTTGCCCTTCCCTTCACACCCAGCC
CGTCTCTCAGTTTGCCTGCGGGCACTCGTCCATCTCTCTGTATACCGTAT
ACATACCCGCCCTCCCGCCCCAACCCCACACTACCTTTAACCCTAACCCC
TTCTGACCAAAAGGGGTATATCAAGGCGAGCGGGGGTGACGCGAACAGCA
ACAATGCTACCGATGGGGTGTCGAGGTGTCGCAGCTGCGGCGCGGGCAAC
AGCGGCGCCTGCAGCTTCGTTCTCGGGGAGGGGCCCTACTGCTGGAAGGA
GCCGGGTTCCCGGGAGGTTGAGCCGTGCTCGGTCTGCTGCACAGAGCCGG
AGGTACCTATTTACACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18921:123..2192-

>mRNA_Ecto-sp13_S_contig18921.5988.1 ID=mRNA_Ecto-sp13_S_contig18921.5988.1|Name=mRNA_Ecto-sp13_S_contig18921.5988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18921:123..2192- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGACTTGTACATAAAGAGCACACGGGATTGCACCGCCGCTCAGGGTCC
GAGTTGCTCCTTGGACGCGCCATGCACCCCTTGCGGTCTCGACACGTTAC
AGGGGTATATCAAGGCGAGCGGGGGTGACGCGAACAGCAACAATGCTACC
GATGGGGTGTCGAGGTGTCGCAGCTGCGGCGCGGGCAACAGCGGCGCCTG
CAGCTTCGTTCTCGGGGAGGGGCCCTACTGCTGGAAGGAGCCGGGTTCCC
GGGAGGTTGAGCCGTGCTCGGTCTGCTGCACAGAGCCGGAGGTACCTATT
TACACGTGA
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