mRNA_Ecto-sp13_S_contig18915.5985.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18915.5985.1
Unique NamemRNA_Ecto-sp13_S_contig18915.5985.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18915.5985.1 vs. uniprot
Match: D8LH68_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH68_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 5.710e-60
Identity = 290/294 (98.64%), Postives = 292/294 (99.32%), Query Frame = 1 
Query:    1 ADGDTALYVAAKAGHDEAVRALLEVQATKVNWQNHKGITSVSVAAHKGREEIVKMLISADADVNIDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAMLHPSKQMRLMQDAEVAERTLVLQKVFNRYTAGKLHVTETQPDVSGSASLSMLVRSLISPISSNRAVFEHIVSFL 882
            ADGDTALYVAAKAGHDEAVRALLEVQATKVNWQNHKGITSVSVAAHKGREEIVKMLISADADVNIDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAMLHPSKQMRLMQDAEVAERTLVLQKVFNRYTAGKL VTETQPDVSGSASLSML+RSLISPISSNRAVFEHI SF+
Sbjct:   46 ADGDTALYVAAKAGHDEAVRALLEVQATKVNWQNHKGITSVSVAAHKGREEIVKMLISADADVNIDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAMLHPSKQMRLMQDAEVAERTLVLQKVFNRYTAGKLLVTETQPDVSGSASLSMLIRSLISPISSNRAVFEHIASFI 339
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BLAST of mRNA_Ecto-sp13_S_contig18915.5985.1 vs. uniprot
Match: A0A835YM71_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM71_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.030e-16
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 ADGDTALYVAAKAGHDEAVRALLEVQATKVNWQNHKGITSVSVAAHKGREEIVKMLISADADV 189
            A+GDTAL++AAKAGH++AV ALL V  T+VNWQNHKGIT++S AAHKGR  IV+ LI+A ADV
Sbjct:  235 AEGDTALFIAAKAGHEDAVAALLAVPETQVNWQNHKGITALSAAAHKGRAGIVRALIAAGADV 297
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18915.5985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LH68_ECTSI5.710e-6098.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YM71_9STRA1.030e-1669.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18915contigEcto-sp13_S_contig18915:1042..3400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score210.3
Seed ortholog evalue1.2e-51
Seed eggNOG ortholog2880.D8LH68
Model size882
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0031625,GO:0032446,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1990234
Exons6
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-24_000760.1
Cds size882
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18915.5985.1prot_Ecto-sp13_S_contig18915.5985.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18915 1042..3400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462966.229961-CDS-Ecto-sp13_S_contig18915:1041..11501681462966.229961-CDS-Ecto-sp13_S_contig18915:1041..1150Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18915 1042..1150 +
1681462966.2436028-CDS-Ecto-sp13_S_contig18915:1509..16411681462966.2436028-CDS-Ecto-sp13_S_contig18915:1509..1641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18915 1510..1641 +
1681462966.267477-CDS-Ecto-sp13_S_contig18915:1785..19791681462966.267477-CDS-Ecto-sp13_S_contig18915:1785..1979Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18915 1786..1979 +
1681462966.276711-CDS-Ecto-sp13_S_contig18915:2464..25241681462966.276711-CDS-Ecto-sp13_S_contig18915:2464..2524Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18915 2465..2524 +
1681462966.2853038-CDS-Ecto-sp13_S_contig18915:2753..29511681462966.2853038-CDS-Ecto-sp13_S_contig18915:2753..2951Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18915 2754..2951 +
1681462966.2940197-CDS-Ecto-sp13_S_contig18915:3211..34001681462966.2940197-CDS-Ecto-sp13_S_contig18915:3211..3400Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18915 3212..3400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18915.5985.1

>prot_Ecto-sp13_S_contig18915.5985.1 ID=prot_Ecto-sp13_S_contig18915.5985.1|Name=mRNA_Ecto-sp13_S_contig18915.5985.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=294bp
ADGDTALYVAAKAGHDEAVRALLEVQATKVNWQNHKGITSVSVAAHKGRE
EIVKMLISADADVNIDSNNGSTPLIQASHFGHAEVVKLLVNANALVDKAN
QKGTTALMRATQEGNEEVVGILVAAGADVSKRNNERMNALMLGSQRGHAA
IVQALIHHKADIDGQTAQGSTALMLACKRGHEEVVRVLLTAGAELHQKDS
RGRTARDTASKRSHESILAMLHPSKQMRLMQDAEVAERTLVLQKVFNRYT
AGKLHVTETQPDVSGSASLSMLVRSLISPISSNRAVFEHIVSFL
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mRNA from alignment at Ecto-sp13_S_contig18915:1042..3400+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18915.5985.1 ID=mRNA_Ecto-sp13_S_contig18915.5985.1|Name=mRNA_Ecto-sp13_S_contig18915.5985.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2359bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18915:1042..3400+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGACGGAGATACCGCGCTTTACGTTGCCGCAAAAGCTGGGCACGACGA
AGCCGTGCGTGCGCTACTGGAGGTGCAGGCCACGAAGGTTAACTGGCAAA
ATCACAAAGGTGCGCGATCCAGTGGAATTTGTTGGCAGTCCGTGGTTCTA
CGTTCATGCGCGCAGGCTTTTTTGATTTGACGCTGCTGCTCGTCAACGCC
GACTCTAAGCAACGGAAAACAAAGCAAATGCAACCACTGTTGGTTCTTGT
TTGCAGCTGCTCGCAGTAAAGACGGAATCGTGGCCATACGGTATCAGGAA
GATGTTCTACTGGTTTTATGCAGTGTTGAGCGCTGGTTGTAGTTCAACAT
CCAAATTGTGTTGGCGACCGGTCCTGGGCGTCGCAAAGGCGCAAACAGCT
GCAATCGGCGGCCTTCGAGTGTAGACTCACGTCGTTTGTGGACTCGTGTT
GTACTTGTCGATTTGTAGGTATTACGTCTGTGTCGGTGGCGGCACACAAG
GGGCGCGAGGAGATTGTCAAGATGCTTATATCAGCTGACGCGGACGTGAA
CATCGACAGCAACAACGGCTCAACACCCCTTATCCAGGCGTCCCATTTCG
GTAAGTCTGCTAGTCGAGCGTGACCATCGAACGCTCTCATATTCTCCTCT
TGCATCGCTGGGTTTATGTCTTGCCCATCCCCGTTACTTCGTGAATCTGC
ACCGTCGATGTATTTAGTTACCTTTTTGGTTCATCGTTCGGCAGGGCATG
CCGAGGTGGTGAAACTCCTTGTCAACGCGAACGCGCTCGTGGACAAAGCG
AACCAAAAGGGAACAACAGCGCTAATGCGCGCGACTCAAGAGGGGAACGA
AGAGGTGGTCGGTATACTTGTTGCTGCTGGCGCGGATGTTAGCAAGCGCA
ACAACGAGCGCATGAACGCGCTGATGCTGGGATCGCAAGTGAGACATTTG
TGCTGTACTGCGGTTGGAAATATATGTCCTTCAACTGCGGTTGGCACTAT
GCTATGTGTGTCAAGTAGTTAAAGTAGGAGTTCGCTGTATTGCCAGGCCG
ACCCACAGTCAACACATGGAGAGTTTTTGGGCAACTGCCTTGCATTCGCT
CTGTTCACTGGCATATTCAAGCACGATAGCCTGAGTGTTGGGCCCGTTTG
CTGCCGTCCGTGGCAATCAGGTAAATCATGCTTCGGTTGCTCACCCCGTG
TGTGGTGGCGTGTGAACGCAAGTGCAGCATCATCTTTCGGTGTTTTGCAG
CGCCTCCTTTGCAACCGTGTGTGATGAACGAGCAGGCAGGGTGTGCTCAG
ACTACGTCGCGAAATCGTATAGGGGTGACTAGCATCGTAGCGGCCTGTCT
CACCTACACATACCATCCTTGTTACAGCCACTTACCCATCGGCTCATGTG
TCTTGTTGGGTTTGACTTCTCAGAGAGGGCATGCGGCGATAGTGCAAGCT
CTCATCCATCACAAGGCGGACATCGACGGGCAGGTATGCCACAACTTGGT
GTATTCTCAGGGTACAGGCAAAAGACCAACGGGTTGCTTGACACTCGTCC
GGCTACATGTTTCGAAGTTCATATTTTTTGTTGCTGCGCGCTTGCCTCTG
TCAACACTTCGAAAATATCGTTCCTTGGGTCGTGCACTATAATAGTATCG
ACCAGCTCGACGTTTTTTGCCACACCTTGCCCCATGTGTATCTCTCCGTT
TGGCATCGCCAGACAGCGCAAGGCAGCACGGCCCTGATGCTGGCATGTAA
ACGGGGCCACGAGGAAGTTGTTCGAGTACTACTCACGGCCGGAGCAGAAC
TGCATCAAAAGGACAGTCGCGGGAGAACAGCACGAGATACAGCATCAAAG
CGAAGTCATGAGTCAATCTTGGCCATGTTGCATCCCTCAAAGCAGATGAG
GCTCATGCAGGTGGGGTACTGAAAATTCAAGACACGAGCAGGCGGATGAC
GGACCACGTCCTGCTTTCGTGTATCGTGCACACCTCGATACGGTAAATGG
ACAGTTAAATACTCACGGCCAAGTCCCCCGATGTGCGCTCCAACATCTAT
TGGTACCATATTACGCAAGCGATACGAAGAGCTGGTCTTGCCAGGTGTCA
TGGGTTCTTCCTTTGCTACACGGTTTAACTTGAACTACAATGTCTGCTGT
CTCCTACTCTGTTGATGCAGGACGCGGAGGTTGCAGAAAGGACGCTCGTG
CTGCAGAAGGTTTTCAATCGCTACACGGCAGGAAAGCTACATGTAACGGA
GACACAACCAGACGTTTCGGGTTCGGCGTCTCTTTCAATGCTTGTCCGGA
GCCTCATCTCGCCAATATCCTCCAATCGAGCAGTTTTCGAGCACATCGTA
AGTTTTTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18915:1042..3400+

>mRNA_Ecto-sp13_S_contig18915.5985.1 ID=mRNA_Ecto-sp13_S_contig18915.5985.1|Name=mRNA_Ecto-sp13_S_contig18915.5985.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=882bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18915:1042..3400+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGACGGAGATACCGCGCTTTACGTTGCCGCAAAAGCTGGGCACGACGA
AGCCGTGCGTGCGCTACTGGAGGTGCAGGCCACGAAGGTTAACTGGCAAA
ATCACAAAGGTATTACGTCTGTGTCGGTGGCGGCACACAAGGGGCGCGAG
GAGATTGTCAAGATGCTTATATCAGCTGACGCGGACGTGAACATCGACAG
CAACAACGGCTCAACACCCCTTATCCAGGCGTCCCATTTCGGGCATGCCG
AGGTGGTGAAACTCCTTGTCAACGCGAACGCGCTCGTGGACAAAGCGAAC
CAAAAGGGAACAACAGCGCTAATGCGCGCGACTCAAGAGGGGAACGAAGA
GGTGGTCGGTATACTTGTTGCTGCTGGCGCGGATGTTAGCAAGCGCAACA
ACGAGCGCATGAACGCGCTGATGCTGGGATCGCAAAGAGGGCATGCGGCG
ATAGTGCAAGCTCTCATCCATCACAAGGCGGACATCGACGGGCAGACAGC
GCAAGGCAGCACGGCCCTGATGCTGGCATGTAAACGGGGCCACGAGGAAG
TTGTTCGAGTACTACTCACGGCCGGAGCAGAACTGCATCAAAAGGACAGT
CGCGGGAGAACAGCACGAGATACAGCATCAAAGCGAAGTCATGAGTCAAT
CTTGGCCATGTTGCATCCCTCAAAGCAGATGAGGCTCATGCAGGACGCGG
AGGTTGCAGAAAGGACGCTCGTGCTGCAGAAGGTTTTCAATCGCTACACG
GCAGGAAAGCTACATGTAACGGAGACACAACCAGACGTTTCGGGTTCGGC
GTCTCTTTCAATGCTTGTCCGGAGCCTCATCTCGCCAATATCCTCCAATC
GAGCAGTTTTCGAGCACATCGTAAGTTTTTTG
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