prot_Ecto-sp13_S_contig18912.5984.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18912.5984.1
Unique Nameprot_Ecto-sp13_S_contig18912.5984.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length36
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18912.5984.1 vs. uniprot
Match: D8LH29_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH29_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.540e-15
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 
Query:    1 MSGPNWPVRRYEIIVKKGGAPLGLKLHQTKSRRG 34
            MSGPNWPVRRYEIIVKKGGAPLGLKLHQTKSRRG
Sbjct:    7 MSGPNWPVRRYEIIVKKGGAPLGLKLHQTKSRRG 40
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BLAST of mRNA_Ecto-sp13_S_contig18912.5984.1 vs. uniprot
Match: A0A6H5JHW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW4_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.100e-14
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 0 
Query:    1 MSGPNWPVRRYEIIVKKGGAPLGLKLHQTKSRRG 34
            MSGPNWPVRRYEIIVKKGGAPLGLKLHQTKS RG
Sbjct:    7 MSGPNWPVRRYEIIVKKGGAPLGLKLHQTKSTRG 40
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18912.5984.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LH29_ECTSI1.540e-15100.00PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHW4_9PHAE1.100e-1497.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18912contigEcto-sp13_S_contig18912:2970..3077 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18912.5984.1mRNA_Ecto-sp13_S_contig18912.5984.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18912 2669..3077 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18912.5984.1 ID=prot_Ecto-sp13_S_contig18912.5984.1|Name=mRNA_Ecto-sp13_S_contig18912.5984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=36bp
MSGPNWPVRRYEIIVKKGGAPLGLKLHQTKSRRGD*
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