mRNA_Ecto-sp13_S_contig18912.5984.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18912.5984.1
Unique NamemRNA_Ecto-sp13_S_contig18912.5984.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18912.5984.1 vs. uniprot
Match: D8LH29_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH29_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.270e-17
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 3 
Query:  102 GLSLMSGPNWPVRRYEIIVKKGGAPLGLKLHQTKSRRG 215
            GLSLMSGPNWPVRRYEIIVKKGGAPLGLKLHQTKSRRG
Sbjct:    3 GLSLMSGPNWPVRRYEIIVKKGGAPLGLKLHQTKSRRG 40
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BLAST of mRNA_Ecto-sp13_S_contig18912.5984.1 vs. uniprot
Match: A0A6H5JHW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.110e-16
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 3 
Query:  102 GLSLMSGPNWPVRRYEIIVKKGGAPLGLKLHQTKSRRG 215
            GLSLMSGPNWPVRRYEIIVKKGGAPLGLKLHQTKS RG
Sbjct:    3 GLSLMSGPNWPVRRYEIIVKKGGAPLGLKLHQTKSTRG 40
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18912.5984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LH29_ECTSI1.270e-17100.00PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHW4_9PHAE1.110e-1697.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18912contigEcto-sp13_S_contig18912:2669..3077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size221
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size108
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462966.1849916-UTR-Ecto-sp13_S_contig18912:2668..27701681462966.1849916-UTR-Ecto-sp13_S_contig18912:2668..2770Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18912 2669..2770 +
1681462966.193841-UTR-Ecto-sp13_S_contig18912:2958..29691681462966.193841-UTR-Ecto-sp13_S_contig18912:2958..2969Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18912 2959..2969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462966.2023938-CDS-Ecto-sp13_S_contig18912:2969..30771681462966.2023938-CDS-Ecto-sp13_S_contig18912:2969..3077Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18912 2970..3077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18912.5984.1prot_Ecto-sp13_S_contig18912.5984.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18912 2970..3077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18912.5984.1

>prot_Ecto-sp13_S_contig18912.5984.1 ID=prot_Ecto-sp13_S_contig18912.5984.1|Name=mRNA_Ecto-sp13_S_contig18912.5984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=36bp
MSGPNWPVRRYEIIVKKGGAPLGLKLHQTKSRRGD*
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mRNA from alignment at Ecto-sp13_S_contig18912:2669..3077+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18912.5984.1 ID=mRNA_Ecto-sp13_S_contig18912.5984.1|Name=mRNA_Ecto-sp13_S_contig18912.5984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=409bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18912:2669..3077+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCATCCATTGTCCTTGGTGCTTGTGAGAGCAGGGTGCTCGTTCCTTGC
TTGTGAGGGCGCCAGGTCTTCTCAACACACCAACACACGTCGTTCTTTCA
AGGTAAGCACAGATCATAGTGTGGGTCATCATGGCTGCGGGCTGGAGGTG
GTAAGATTGCAATCCTGGATACCGTCTGCTGGCCTTCTTCTCTCGACGTA
GGGCCAACAACGGGGCTGATACTGCTGTTGGGGGAGCCCTCCTGAAACTC
GCTGCTCCTGTTGCCTCGCCGCTCGTGTATGGTACGGCAGGCCTGTCCCT
GATGTCCGGCCCGAATTGGCCAGTTCGGAGATATGAAATCATCGTCAAGA
AGGGTGGAGCGCCTTTGGGGCTCAAGCTGCACCAGACCAAGAGCAGAAGA
GGTGACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18912:2669..3077+

>mRNA_Ecto-sp13_S_contig18912.5984.1 ID=mRNA_Ecto-sp13_S_contig18912.5984.1|Name=mRNA_Ecto-sp13_S_contig18912.5984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18912:2669..3077+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGGCCCGAATTGGCCAGTTCGGAGATATGAAATCATCGTCAAGAA
GGGTGGAGCGCCTTTGGGGCTCAAGCTGCACCAGACCAAGAGCAGAAGAG
GTGACTGA
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