mRNA_Ecto-sp13_S_contig18911.5983.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18911.5983.1
Unique NamemRNA_Ecto-sp13_S_contig18911.5983.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18911.5983.1 vs. uniprot
Match: A0A6H5JSF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF1_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 6.460e-18
Identity = 37/56 (66.07%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   82 MAEADREALVAIYNATGGPDWRQSGRWNTDADLSEWHRIKTNDQGRVVGLVLQYNN 249
            MA+ DREAL A YNATGGP+W  +  WN DAD SEW  I+TNDQGRVV L L  NN
Sbjct:   53 MAQTDREALGAFYNATGGPNWEHNNNWNADADPSEWLGIETNDQGRVVRLSLGSNN 108
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BLAST of mRNA_Ecto-sp13_S_contig18911.5983.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.210e-17
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:   82 MAEADREALVAIYNATGGPDWRQSGRWNTDADLSEWHRIKTNDQGRVVGLVLQYNN 249
            MA+ DR+ALVA+Y ATGG +WR+S  W+TDADL  WH +  NDQGRVV L L+ NN
Sbjct:    1 MAQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNN 56
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BLAST of mRNA_Ecto-sp13_S_contig18911.5983.1 vs. uniprot
Match: A0A6H5K3C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C2_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 6.110e-17
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   82 MAEADREALVAIYNATGGPDWRQSGRWNTDADLSEWHRIKTNDQGRVVGLVLQYNN 249
            MA+ DR+ALVA+Y ATGG  W  S  W+TD+DL  WH +  NDQGRVV L L +NN
Sbjct:    1 MAQTDRDALVAMYRATGGEKWSTSQNWDTDSDLKTWHGVNVNDQGRVVKLELGFNN 56
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BLAST of mRNA_Ecto-sp13_S_contig18911.5983.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.060e-16
Identity = 30/52 (57.69%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:   94 DREALVAIYNATGGPDWRQSGRWNTDADLSEWHRIKTNDQGRVVGLVLQYNN 249
            DR ALVA++NATGG +W+++ +WNTDA L +W+ ++ ND GRVV L L+YNN
Sbjct:   12 DRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNN 63
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BLAST of mRNA_Ecto-sp13_S_contig18911.5983.1 vs. uniprot
Match: A0A6H5JX36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX36_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.270e-15
Identity = 33/56 (58.93%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   82 MAEADREALVAIYNATGGPDWRQSGRWNTDADLSEWHRIKTNDQGRVVGLVLQYNN 249
            MA  DR+ALVA+YNAT G  W  +  WNT A LS+WH +  NDQGRVV L L  NN
Sbjct:    1 MASTDRDALVALYNATEGGRWSTNRNWNTGAPLSQWHGVHVNDQGRVVALELAENN 56
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BLAST of mRNA_Ecto-sp13_S_contig18911.5983.1 vs. uniprot
Match: D8LL09_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL09_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.670e-15
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   76 SIMAEADREALVAIYNATGGPDWRQSGRWNTDADLSEWHRIKTNDQGRVVGLVLQYNN 249
            S M + DR+ALVA+Y+A GG +W+ +G WN DADLS+WH I  NDQGRVV + L  NN
Sbjct:   49 STMPQTDRDALVALYDAAGGFNWKNNGNWNADADLSKWHGININDQGRVVEVHLAANN 106
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BLAST of mRNA_Ecto-sp13_S_contig18911.5983.1 vs. uniprot
Match: D8LBY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY3_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 5.080e-15
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   82 MAEADREALVAIYNATGGPDWRQSGRWNTDADLSEWHRIKTNDQGRVVGLVLQYNN 249
            MA+ DR+ALV +Y ATGG +WR+   W+TDADL  WH +  NDQGRVV L L+ NN
Sbjct:    1 MAQTDRDALVVLYRATGGENWRERQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNN 56
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18911.5983.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.030e-14
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   82 MAEADREALVAIYNATGGPDWRQSGRWNTDADLSEWHRIKTNDQGRVVGLVLQYNN 249
            MA+ DR+ALVA+YNATGG +W+ +  W T A LS+WH ++ N QGRVV L L +NN
Sbjct:   71 MAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNN 126
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18911.5983.1 vs. uniprot
Match: D7G496_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G496_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.280e-14
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   82 MAEADREALVAIYNATGGPDWRQSGRWNTDADLSEWHRIKTNDQGRVVGLVLQYNN 249
            MA+ DR+ALVA+YNATGG  W+ +  WNT A LS+W+R++ N QGRVV L L  NN
Sbjct:  125 MAQTDRKALVALYNATGGVKWKNNQNWNTSAALSQWYRVEVNSQGRVVKLSLWNNN 180
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18911.5983.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.300e-14
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   82 MAEADREALVAIYNATGGPDWRQSGRWNTDADLSEWHRIKTNDQGRVVGLVLQYN 246
            MA  DR+ LVA+YNAT GP+W+    W+T+ADLS+WH +K +DQGRVV L L  N
Sbjct:    1 MAPTDRDVLVALYNATDGPNWKNKTNWDTNADLSDWHGVKADDQGRVVKLSLSAN 55
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18911.5983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSF1_9PHAE6.460e-1866.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK91_9PHAE1.210e-1762.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3C2_9PHAE6.110e-1758.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3D6_9PHAE3.060e-1657.69Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JX36_9PHAE1.270e-1558.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL09_ECTSI1.670e-1558.62Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LBY3_ECTSI5.080e-1558.93Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LFK2_ECTSI1.030e-1457.14Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7G496_ECTSI1.280e-1458.93Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LKS5_ECTSI1.300e-1458.18LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18911contigEcto-sp13_S_contig18911:1463..2525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score77.4
Seed ortholog evalue3.5e-12
Seed eggNOG ortholog2880.D8LL09
Model size250
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.regulation of response to stimulus
EggNOG OGs2R960@2759,COG4886@1
Cds size249
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462966.1059642-CDS-Ecto-sp13_S_contig18911:1462..15311681462966.1059642-CDS-Ecto-sp13_S_contig18911:1462..1531Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18911 1463..1531 +
1681462966.1183689-CDS-Ecto-sp13_S_contig18911:2345..25251681462966.1183689-CDS-Ecto-sp13_S_contig18911:2345..2525Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18911 2346..2525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18911.5983.1prot_Ecto-sp13_S_contig18911.5983.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18911 1463..2525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18911.5983.1

>prot_Ecto-sp13_S_contig18911.5983.1 ID=prot_Ecto-sp13_S_contig18911.5983.1|Name=mRNA_Ecto-sp13_S_contig18911.5983.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
QRERKYRTRRPTGSSFSLLQSAKALSIMAEADREALVAIYNATGGPDWRQ
SGRWNTDADLSEWHRIKTNDQGRVVGLVLQYNN
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mRNA from alignment at Ecto-sp13_S_contig18911:1463..2525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18911.5983.1 ID=mRNA_Ecto-sp13_S_contig18911.5983.1|Name=mRNA_Ecto-sp13_S_contig18911.5983.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1063bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18911:1463..2525+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAAGAGAGAGAAAGTACCGAACGAGAAGGCCAACAGGATCCAGCTTCAG
TCTCCTGCAAAGTGCAAAGGTGAGAGCATGCCAGGGAGACCCTCCCACGC
CGTGCAGACATAGACAGGTAGGTGGGTTCGGTGTTCTCTTTTCTTACTTT
TCAGTAATTCACACGCAGACCCAAAAAGGTGAGCGTGTGTTCCCCGGCCG
CAGCGCCTTGTGGCATGGGTGCGCGCCGCAGAAACGTCGAGAGATCACGA
TTTTGCGAGATGGAACGCACGCAGCGACCCCGTAGAAGTTCGGCGCATTG
CCTGGCGAGATGGCTTCTTTGCCCGTGCCTGTTGCCCCGTGCCACTGCTC
TGTTGTTTCCATGTGTAGAACACACCCTGCAGATGCCCTCTTATGAGGGA
ACGGTGAGAATGAGCAAAACTCACAGATTATTTACGGCGGATATGGACCC
TGGCAAGTGTCGGAGACAGAGGCTGGTGCCTTGACAGTGTTATCCCACTG
CAAGCGGAAGGCTATTTCCTCTCGTGATATGTAAACGAGGAGAAGAGGGA
GAGTAGCCAGAGAGCGCAGAGGGAGAGGAGAGTCGAAGACTCTCCGCTTC
CACTCTGGCAAATGGCCCGGGACTTCGGAAGAGACAAATCTCCGACGGTG
CGTTTCTTTTCGCTTGGAGCATCACAAGATACCCGGATGGAGCTATCTTC
CTACACGTTGTATGTGTACACATGGTTGGTTATACTCCCGACAGGTGTCC
TCAACGCGGATGTCAAATGAAACACCACCGCGCTGAAGAGACGGCCGACT
TCGAGCTACCTTGCCTGCCACGTCGACATCATTTTTCGCAATTGTCCCGC
AACCCTCCGTTCATTATCTCCTGCACACCCTAGGCCCTGTCTATAATGGC
GGAGGCGGACCGTGAGGCACTAGTTGCCATCTACAACGCAACCGGTGGGC
CTGACTGGAGGCAAAGCGGACGCTGGAACACGGATGCTGACCTCTCGGAA
TGGCACAGAATCAAAACCAACGACCAGGGCCGTGTTGTGGGTCTAGTTCT
GCAATACAACAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18911:1463..2525+

>mRNA_Ecto-sp13_S_contig18911.5983.1 ID=mRNA_Ecto-sp13_S_contig18911.5983.1|Name=mRNA_Ecto-sp13_S_contig18911.5983.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18911:1463..2525+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAAGAGAGAGAAAGTACCGAACGAGAAGGCCAACAGGATCCAGCTTCAG
TCTCCTGCAAAGTGCAAAGGCCCTGTCTATAATGGCGGAGGCGGACCGTG
AGGCACTAGTTGCCATCTACAACGCAACCGGTGGGCCTGACTGGAGGCAA
AGCGGACGCTGGAACACGGATGCTGACCTCTCGGAATGGCACAGAATCAA
AACCAACGACCAGGGCCGTGTTGTGGGTCTAGTTCTGCAATACAACAAC
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