mRNA_Ecto-sp13_S_contig1891.5982.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1891.5982.1
Unique NamemRNA_Ecto-sp13_S_contig1891.5982.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1891.5982.1 vs. uniprot
Match: D7FXN4_ECTSI (Sar1A, Ras superfamily GTPase n=4 Tax=PX clade TaxID=569578 RepID=D7FXN4_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 4.290e-64
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:   34 GFYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTLHPNQDELIVGKVRFKTFDLGGHETARKLWKDYFTTVDGVVFLVDALDRQRFPEAKKELD 324
            GFYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTLHPNQDELIVGKVRFKTFDLGGHETARKLWKDYFTTVDGVVFLVDALDRQRFPEAKKELD
Sbjct:   15 GFYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTLHPNQDELIVGKVRFKTFDLGGHETARKLWKDYFTTVDGVVFLVDALDRQRFPEAKKELD 111
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BLAST of mRNA_Ecto-sp13_S_contig1891.5982.1 vs. uniprot
Match: A0A7S2V1B9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1B9_9STRA)

HSP 1 Score: 196 bits (497), Expect = 8.480e-62
Identity = 93/97 (95.88%), Postives = 96/97 (98.97%), Query Frame = 1 
Query:   34 GFYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTLHPNQDELIVGKVRFKTFDLGGHETARKLWKDYFTTVDGVVFLVDALDRQRFPEAKKELD 324
            G YHKSAKILFLGLDNAGKTTLLHMLKENRVQVH+PTLHPNQDELIVGKVRFKTFDLGGHETARKLW+DYFTTVDGVVFLVDALDR+RFPEAKKELD
Sbjct:   15 GLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHEPTLHPNQDELIVGKVRFKTFDLGGHETARKLWRDYFTTVDGVVFLVDALDRERFPEAKKELD 111
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BLAST of mRNA_Ecto-sp13_S_contig1891.5982.1 vs. uniprot
Match: K8YVP7_NANGC (GTP-binding protein SAR1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YVP7_NANGC)

HSP 1 Score: 188 bits (478), Expect = 9.010e-59
Identity = 86/99 (86.87%), Postives = 96/99 (96.97%), Query Frame = 1 
Query:   28 MSGFYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTLHPNQDELIVGKVRFKTFDLGGHETARKLWKDYFTTVDGVVFLVDALDRQRFPEAKKELD 324
            ++G YHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPT+HPN DELI+GK+RFKTFDLGGHETAR+LWKDY TTVDGVVF+VDALD++RFPEAK+ELD
Sbjct:   23 LAGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELD 121
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BLAST of mRNA_Ecto-sp13_S_contig1891.5982.1 vs. uniprot
Match: F0YAQ6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAQ6_AURAN)

HSP 1 Score: 184 bits (467), Expect = 3.290e-57
Identity = 90/116 (77.59%), Postives = 102/116 (87.93%), Query Frame = 1 
Query:    1 FHAILNLSSMSGFYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTLHPNQDELIVGKVRFKTFDLGGHETARKLWKDYFTTVDGVVFLVDALDRQRFPEAKKELDVRPFLLYC 348
            F+ + NL + +G    SAKILFLGLDNAGKTTLLHMLKENRVQ+HQPTLHPNQDELI+G +RFKTFDLGGHETAR+LWKDYFTTVDGVV++VDALDR RFPEAK+ELD   +LL C
Sbjct:    8 FNVLANLGASAG----SAKILFLGLDNAGKTTLLHMLKENRVQIHQPTLHPNQDELIIGNIRFKTFDLGGHETARRLWKDYFTTVDGVVYMVDALDRGRFPEAKRELD---YLLTC 116
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BLAST of mRNA_Ecto-sp13_S_contig1891.5982.1 vs. uniprot
Match: A0A7S1U8E4_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8E4_9STRA)

HSP 1 Score: 183 bits (465), Expect = 1.400e-56
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:   34 GFYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTLHPNQDELIVGKVRFKTFDLGGHETARKLWKDYFTTVDGVVFLVDALDRQRFPEAKKELD 324
            G YHKSAKILFLGLDNAGKTTLLHMLKENRVQVH+PTLHPNQDELIV  +RFKTFDLGGHETAR+LW+DYF TVDG+VFLVDA DR RFPEAK+ELD
Sbjct:   42 GLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHEPTLHPNQDELIVNNIRFKTFDLGGHETARRLWQDYFATVDGIVFLVDAFDRDRFPEAKEELD 138
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BLAST of mRNA_Ecto-sp13_S_contig1891.5982.1 vs. uniprot
Match: B7FXX2_PHATC (Predicted protein n=7 Tax=Bacillariophyta TaxID=2836 RepID=B7FXX2_PHATC)

HSP 1 Score: 182 bits (461), Expect = 2.520e-56
Identity = 84/97 (86.60%), Postives = 92/97 (94.85%), Query Frame = 1 
Query:   34 GFYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTLHPNQDELIVGKVRFKTFDLGGHETARKLWKDYFTTVDGVVFLVDALDRQRFPEAKKELD 324
            G YHK+AKILFLGLDNAGKTTLLHMLKENRVQVH PTLHPN DELI+G ++FKTFDLGGHETAR+LW+DYFTTVDGVV+LVDA+DR RFPEAKKELD
Sbjct:   15 GLYHKNAKILFLGLDNAGKTTLLHMLKENRVQVHVPTLHPNTDELIIGNIKFKTFDLGGHETARRLWQDYFTTVDGVVYLVDAIDRGRFPEAKKELD 111
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BLAST of mRNA_Ecto-sp13_S_contig1891.5982.1 vs. uniprot
Match: A0A7S2LHQ1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LHQ1_9STRA)

HSP 1 Score: 182 bits (461), Expect = 4.850e-56
Identity = 84/97 (86.60%), Postives = 93/97 (95.88%), Query Frame = 1 
Query:   34 GFYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTLHPNQDELIVGKVRFKTFDLGGHETARKLWKDYFTTVDGVVFLVDALDRQRFPEAKKELD 324
            G +HK+AKILFLGLDNAGKTTLLHMLKENRVQVH PTLHPN DELI+GK++FKTFDLGGHETAR+LW+DYFTTVDGVV+LVDA+DR RFPEAKKELD
Sbjct:   35 GLHHKNAKILFLGLDNAGKTTLLHMLKENRVQVHVPTLHPNTDELIIGKIKFKTFDLGGHETARRLWQDYFTTVDGVVYLVDAIDRGRFPEAKKELD 131
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BLAST of mRNA_Ecto-sp13_S_contig1891.5982.1 vs. uniprot
Match: A0A7R9ZN47_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZN47_9STRA)

HSP 1 Score: 182 bits (462), Expect = 5.920e-56
Identity = 84/98 (85.71%), Postives = 93/98 (94.90%), Query Frame = 1 
Query:   31 SGFYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTLHPNQDELIVGKVRFKTFDLGGHETARKLWKDYFTTVDGVVFLVDALDRQRFPEAKKELD 324
            +G YHK+AKILFLGLDNAGKTTLLHMLKENRVQVH PTLHPN DELI+G ++FKTFDLGGHETAR+LW+DYFTTVDGVV+LVDA+DR RFPEAKKELD
Sbjct:   54 AGLYHKNAKILFLGLDNAGKTTLLHMLKENRVQVHVPTLHPNTDELIIGNIKFKTFDLGGHETARRLWQDYFTTVDGVVYLVDAIDRGRFPEAKKELD 151
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BLAST of mRNA_Ecto-sp13_S_contig1891.5982.1 vs. uniprot
Match: A0A1E7FLB6_9STRA (Small GTP-binding protein sar1 n=3 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FLB6_9STRA)

HSP 1 Score: 179 bits (454), Expect = 3.020e-55
Identity = 82/97 (84.54%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:   34 GFYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTLHPNQDELIVGKVRFKTFDLGGHETARKLWKDYFTTVDGVVFLVDALDRQRFPEAKKELD 324
            G YHK+AKILFLGLDNAGKTTLLHMLKENRVQVH PTLHPN DELI+G ++FKTFDLGGHETAR+LW DYFTTVDGVV++VD++DR RFPEAKKELD
Sbjct:   17 GLYHKNAKILFLGLDNAGKTTLLHMLKENRVQVHVPTLHPNTDELIIGNIKFKTFDLGGHETARRLWADYFTTVDGVVYIVDSIDRGRFPEAKKELD 113
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BLAST of mRNA_Ecto-sp13_S_contig1891.5982.1 vs. uniprot
Match: B8BUA4_THAPS (Arf-type small G protein n=5 Tax=Bacillariophyta TaxID=2836 RepID=B8BUA4_THAPS)

HSP 1 Score: 177 bits (448), Expect = 2.390e-54
Identity = 82/97 (84.54%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:   34 GFYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTLHPNQDELIVGKVRFKTFDLGGHETARKLWKDYFTTVDGVVFLVDALDRQRFPEAKKELD 324
            G YHK+AKILFLGLDNAGKTTLLHMLKENRVQ H PTLHPN DELIVG+++ KTFDLGGHETAR+LW+DYFTTVDGVV+LVDA+DR RFPEAK+ELD
Sbjct:   15 GLYHKNAKILFLGLDNAGKTTLLHMLKENRVQAHVPTLHPNTDELIVGQLKLKTFDLGGHETARRLWQDYFTTVDGVVYLVDAIDRGRFPEAKRELD 111
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1891.5982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXN4_ECTSI4.290e-64100.00Sar1A, Ras superfamily GTPase n=4 Tax=PX clade Tax... [more]
A0A7S2V1B9_9STRA8.480e-6295.88Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K8YVP7_NANGC9.010e-5986.87GTP-binding protein SAR1 n=3 Tax=Monodopsidaceae T... [more]
F0YAQ6_AURAN3.290e-5777.59Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1U8E4_9STRA1.400e-5687.63Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
B7FXX2_PHATC2.520e-5686.60Predicted protein n=7 Tax=Bacillariophyta TaxID=28... [more]
A0A7S2LHQ1_9STRA4.850e-5686.60Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7R9ZN47_9STRA5.920e-5685.71Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
A0A1E7FLB6_9STRA3.020e-5584.54Small GTP-binding protein sar1 n=3 Tax=Bacillariac... [more]
B8BUA4_THAPS2.390e-5484.54Arf-type small G protein n=5 Tax=Bacillariophyta T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1891contigEcto-sp13_S_contig1891:14143..14847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score202.2
Seed ortholog evalue1.2e-49
Seed eggNOG ortholog2880.D7FXN4
Model size348
KEGG koko:K07953
KEGG Pathwayko04141,ko05134,map04141,map05134
KEGG ModuleM00404
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0006810,GO:0006888,GO:0006900,GO:0006996,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0012507,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0022607,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0034622,GO:0035459,GO:0043226,GO:0043227,GO:0043229,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0048194,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051668,GO:0061024,GO:0065003,GO:0071840,GO:0090110,GO:0090114,GO:0097708,GO:0098588,GO:0098796,GO:0098805
Exons2
EggNOG free text desc.intracellular protein transport
EggNOG OGsKOG0077@1,KOG0077@2759
Cds size321
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04031,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462966.052502-UTR-Ecto-sp13_S_contig1891:14142..141691681462966.052502-UTR-Ecto-sp13_S_contig1891:14142..14169Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1891 14143..14169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462966.0647824-CDS-Ecto-sp13_S_contig1891:14169..143221681462966.0647824-CDS-Ecto-sp13_S_contig1891:14169..14322Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1891 14170..14322 +
1681462966.0755234-CDS-Ecto-sp13_S_contig1891:14679..148471681462966.0755234-CDS-Ecto-sp13_S_contig1891:14679..14847Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1891 14680..14847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1891.5982.1prot_Ecto-sp13_S_contig1891.5982.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1891 14170..14847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1891.5982.1

>prot_Ecto-sp13_S_contig1891.5982.1 ID=prot_Ecto-sp13_S_contig1891.5982.1|Name=mRNA_Ecto-sp13_S_contig1891.5982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
MSGFYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTLHPNQDELIVG
KVRFKTFDLGGHETARKLWKDYFTTVDGVVFLVDALDRQRFPEAKKELDV
RPFLLYC
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mRNA from alignment at Ecto-sp13_S_contig1891:14143..14847+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1891.5982.1 ID=mRNA_Ecto-sp13_S_contig1891.5982.1|Name=mRNA_Ecto-sp13_S_contig1891.5982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=705bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1891:14143..14847+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCACGCAATTTTAAATTTATCGTCAATGTCAGGGTTTTACCACAAGAG
CGCCAAGATCCTCTTCTTGGGGCTCGACAACGCGGGAAAGACAACCCTCC
TGCACATGTTGAAGGAGAACAGGGTACAGGTGCACCAGCCCACGCTGCAC
CCAAACCAGGACGAGCTCATCGTGGGGAAGGTGTGTTCGTGTTCTCTGCT
TTTGTCCTTAGCATCGGCCGGCCGCGCTAACCGGCTGACCAATGAAGCGA
CGCTCTTCTTGAAGATAGCGGAATAGAGAACACGATCAACATTCTCTCTT
TGTGTGCGTGTCTTTTGTCATTCATGTCGACCGCGCTAACCGACTGACCA
ATGGAAAGACGCCAGTCTCGTAGATAGCGGGATAGAAAACACGATCGACG
TTCTTTCTGTGTGCGCGTGTCTTGGTCATTAGCATGGGCTGCGCTTACCC
GCTGACCACCATTGTGCATGTGTGCGCTCTTCTCCGTCTCATGCACTTCT
TGCTGTTGTTGCTGCGACGCGTCGTTTCGAACTTCAGGTTCGCTTCAAGA
CGTTCGACCTCGGAGGCCACGAGACGGCGCGAAAGCTGTGGAAGGACTAC
TTCACCACGGTGGACGGCGTTGTCTTTCTCGTCGATGCGCTGGACCGGCA
GCGGTTCCCGGAGGCGAAGAAGGAGCTTGACGTGAGGCCGTTTTTGCTCT
ATTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1891:14143..14847+

>mRNA_Ecto-sp13_S_contig1891.5982.1 ID=mRNA_Ecto-sp13_S_contig1891.5982.1|Name=mRNA_Ecto-sp13_S_contig1891.5982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1891:14143..14847+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCAGGGTTTTACCACAAGAGCGCCAAGATCCTCTTCTTGGGGCTCGA
CAACGCGGGAAAGACAACCCTCCTGCACATGTTGAAGGAGAACAGGGTAC
AGGTGCACCAGCCCACGCTGCACCCAAACCAGGACGAGCTCATCGTGGGG
AAGGTTCGCTTCAAGACGTTCGACCTCGGAGGCCACGAGACGGCGCGAAA
GCTGTGGAAGGACTACTTCACCACGGTGGACGGCGTTGTCTTTCTCGTCG
ATGCGCTGGACCGGCAGCGGTTCCCGGAGGCGAAGAAGGAGCTTGACGTG
AGGCCGTTTTTGCTCTATTGT
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