mRNA_Ecto-sp13_S_contig1891.5980.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1891.5980.1
Unique NamemRNA_Ecto-sp13_S_contig1891.5980.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1891.5980.1 vs. uniprot
Match: A0A6H5L6Y5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y5_9PHAE)

HSP 1 Score: 490 bits (1261), Expect = 1.530e-166
Identity = 303/366 (82.79%), Postives = 311/366 (84.97%), Query Frame = 3 
Query:  207 MLTRLMLLLAFLDAASSWSAXXXXXXXXXFSSPPRMLLDFSTLTSSRRHGGQKHQIEPDNSSSSSGQPWTPMRPLARERATFASRTRERSSATRMSSAPSGEGRREVNRVVGSIARGGSVVAFVTAACSAFPSCSSXXXXXXXXIVGEAGGSEMGARVDPAATTSFAAVVVAFAFLQARIRSAVRARTARRDYEVLFKGMKAKQLAGQASADEEEVKLVEERMSQLLREEQEARMVDIFGIPFNLVIPDGGAGGEPGTAAREAQQLRRLSKSTGRSSGRGELGDGGRAAGEGGLKQQQQQQLGIRESLKAKAESDLRGRKAREEEMSPGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD 1304
            MLTRLMLLLAFL  ASSWSA      XXX                      QKHQI+PDNSSSSS QPWTPMRPL R RATFASR  ERSSATRMSSAPSGEGRRE NRVVGSIARGG VVAFV AACSAFPSCS XXXXXXXXIVGEAGGSEMGARVDPAAT SFAAVVVAFAFLQ+RIR+AVRARTARR+YEVLFKGMKAKQLAGQA  DE+EVKLVEERMSQLL+EEQEAR VDIFGIPFNLVIPDGGAGGEPGTAAREAQQ        GRSSGRGELGDGGRAAGEGG   QQQQQLGIRE++KAKAESDLRGRKAREEEMS GATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD
Sbjct:    1 MLTRLMLLLAFLHTASSWSATATAATXXXXXXXXXXXXXXXXXXXXXXXXXQKHQIDPDNSSSSSRQPWTPMRPLTRGRATFASRAGERSSATRMSSAPSGEGRREGNRVVGSIARGGDVVAFVAAACSAFPSCSXXXXXXXXXIVGEAGGSEMGARVDPAATASFAAVVVAFAFLQSRIRTAVRARTARRNYEVLFKGMKAKQLAGQA--DEKEVKLVEERMSQLLQEEQEARKVDIFGIPFNLVIPDGGAGGEPGTAAREAQQ--------GRSSGRGELGDGGRAAGEGG---QQQQQLGIRETMKAKAESDLRGRKAREEEMSTGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD 353
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BLAST of mRNA_Ecto-sp13_S_contig1891.5980.1 vs. uniprot
Match: D7FXN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN2_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.120e-30
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 3 
Query: 1107 QLGIRESLKAKAESDLRGRKAREEEMSPGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD 1304
            QLGIRES+KAKAESDLR RKAREEEMSPGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD
Sbjct:   69 QLGIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD 134
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1891.5980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6Y5_9PHAE1.530e-16682.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXN2_ECTSI1.120e-3096.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1891contigEcto-sp13_S_contig1891:914..5976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2035
Hectar predicted targeting categorychloroplast
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_002390.1
Cds size1101
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1891.5980.1prot_Ecto-sp13_S_contig1891.5980.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1891 1120..5248 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462965.89133-UTR-Ecto-sp13_S_contig1891:913..11191681462965.89133-UTR-Ecto-sp13_S_contig1891:913..1119Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1891 914..1119 +
1681462965.9656734-UTR-Ecto-sp13_S_contig1891:5248..59761681462965.9656734-UTR-Ecto-sp13_S_contig1891:5248..5976Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1891 5249..5976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462965.9038887-CDS-Ecto-sp13_S_contig1891:1119..16501681462965.9038887-CDS-Ecto-sp13_S_contig1891:1119..1650Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1891 1120..1650 +
1681462965.9121177-CDS-Ecto-sp13_S_contig1891:1900..19991681462965.9121177-CDS-Ecto-sp13_S_contig1891:1900..1999Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1891 1901..1999 +
1681462965.9211354-CDS-Ecto-sp13_S_contig1891:2459..25041681462965.9211354-CDS-Ecto-sp13_S_contig1891:2459..2504Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1891 2460..2504 +
1681462965.938391-CDS-Ecto-sp13_S_contig1891:3699..38431681462965.938391-CDS-Ecto-sp13_S_contig1891:3699..3843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1891 3700..3843 +
1681462965.9489136-CDS-Ecto-sp13_S_contig1891:4533..47461681462965.9489136-CDS-Ecto-sp13_S_contig1891:4533..4746Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1891 4534..4746 +
1681462965.9573064-CDS-Ecto-sp13_S_contig1891:5179..52481681462965.9573064-CDS-Ecto-sp13_S_contig1891:5179..5248Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1891 5180..5248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1891.5980.1

>prot_Ecto-sp13_S_contig1891.5980.1 ID=prot_Ecto-sp13_S_contig1891.5980.1|Name=mRNA_Ecto-sp13_S_contig1891.5980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=367bp
MLTRLMLLLAFLDAASSWSATATATTTVAFSSPPRMLLDFSTLTSSRRHG
GQKHQIEPDNSSSSSGQPWTPMRPLARERATFASRTRERSSATRMSSAPS
GEGRREVNRVVGSIARGGSVVAFVTAACSAFPSCSSAAAAAAAAIVGEAG
GSEMGARVDPAATTSFAAVVVAFAFLQARIRSAVRARTARRDYEVLFKGM
KAKQLAGQASADEEEVKLVEERMSQLLREEQEARMVDIFGIPFNLVIPDG
GAGGEPGTAAREAQQLRRLSKSTGRSSGRGELGDGGRAAGEGGLKQQQQQ
QLGIRESLKAKAESDLRGRKAREEEMSPGATLKVAALWLVLISQLWLLVV
LWNDPMGPASSTFLQD*
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mRNA from alignment at Ecto-sp13_S_contig1891:914..5976+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1891.5980.1 ID=mRNA_Ecto-sp13_S_contig1891.5980.1|Name=mRNA_Ecto-sp13_S_contig1891.5980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5063bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1891:914..5976+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCTGCCCTCCTGTTTCCTCGCTGTCCCCTGCGGCGTCCTAGCCCGCGT
GTGTGAACAGCAAGGGAATCTCACAGAGGCAAGAACCGAGCTGCCCGTTT
GCTCTATCCTGAGAGTCACGCGGGCGTCTGCACACTCGCTGTTGACACAG
CCTCCAACATCGTCAGATCATTTTTGTGATTTCAAATTCGGGAAGCGACG
ACGACGATGTTGACGAGGTTGATGCTGTTGCTGGCGTTCCTCGACGCCGC
TTCTTCCTGGAGCGCGACGGCTACCGCTACCACCACCGTTGCCTTCAGTA
GCCCCCCCCGGATGTTGCTCGACTTCTCAACGCTGACAAGCTCTCGAAGA
CACGGCGGTCAGAAGCATCAAATCGAACCTGACAACAGCAGCAGCAGCAG
CGGACAGCCTTGGACACCGATGCGGCCTCTGGCTCGAGAGAGGGCAACAT
TCGCGTCGCGCACGAGGGAGCGAAGCTCAGCGACGCGCATGAGCAGTGCT
CCTTCAGGTGAAGGGCGGCGTGAGGTAAATCGCGTCGTGGGCAGTATCGC
TCGGGGCGGCAGCGTGGTAGCCTTCGTCACGGCGGCGTGCTCAGCTTTCC
CCAGTTGCTCCTCCGCAGCAGCAGCGGCAGCAGCAGCCATCGTTGGGGAA
GCGGGCGGGTCGGAAATGGGTGCGAGGGTGGACCCCGCTGCTACGACATC
TTTCGCCGCTGTTGTGGTGGCCTTCGCGTTTCTCCAGGTAAATGTCGGTT
CATCCAAATCCCGGACACTCGAGACATGTACTGTAGATACATGTTACCCT
CCGTGTGAAGTGACAGAGACGGGGCTCACGAACCCCACGACCTAACTTTT
CAGAACCTACATCACCCATTTCGACAGCCCTGACTTGTAGTCTAACGGTT
TTGATTTCGCGCATATAGAGATTGGAAACCTTGATCTCGGAGCTCAACAA
GAGCCCTGACTCGCTGCTGCGTGTGCTTCCCATACAGGCGCGGATTCGAT
CCGCTGTAAGAGCGCGAACGGCACGGAGGGACTACGAAGTTCTCTTCAAA
GGGATGAAAGCAAAGCAACTCGCCGGACAGGCAAGCGTGCATTGGCAACA
AACGAAAGCGAAATTCGTGTGTACGGTATACTTCTGAAAGGGCAGGAGCG
AACGTAGCACAAACGTTCCGCCCGATACTTGTGTTCCACTCCAGGAGTAA
GAGGAGGAGAGATTACACCCCCTTGAACCATTTTCAAAAATCGATTTCTC
CACAACCAAGCTTGTGCCATCACCGAAAATGGCGGTTTCGGAAACATCTC
GCCGAGGGGTTTCCGTAGACGCATCGGGCAATTTCCGCACCCGCTTTGTT
GCGGATAGATCGAGCTTTGATATTCGGCCTGAAGGGGGTCGCGTCTTAAC
AGTACTGTAGATGTCATGCTTTGTCGAGTCCCCTCGCGAACGCGATCTCT
CGTGTTTTGTGCACGAACAATCTCCGGAGTACGAACTGAGCCCAGCTTGC
CGTGCTTTGGAGTAACCGTGGTTCTGGTTTCAACGACTCCACGCAGGCGG
ACGAGGAGGAAGTGAAGCTGGTGGAGGAACGCATGTCGCAGGTGTGTGGG
TGGATACCAGCACATGGCACATGTTCCTGCCTTATGGTTCCGCACTGCGA
TGTAACCTTCCTCTTGTGTGACCCCGGCTATCATGTATCTTCGCCGAAAG
GCATGTAAACCGGCGCCAGAATAGATTGGGGCGAATACACACACTGACCT
GAAGGACCGCACAGAATGAGAGGAGTAGATGTTTTCCGCGTGTGGTTGGC
GGAGGGACAATCCACAGACGACAACTTGTCCACTTCTCACGACGGTGTGC
TATCCAAGATGTGGGCGTCCGAGCTTGTTTATTCCTCACATGAATTGTGG
CTTGGAGCATTCACACGCGCCGACTACAGGCAGCTTCACCACCGGCAATA
AACGAGTGATGAGCTCATGGGACATTGCGCATTAGTTTCAGTCTATTCCG
GGGTCGCACAGAGTCCGGTGAACTCACCGCGTGTCAAACGATAAATAGTT
GCACGCCGACAAGGGATTCTGTCTGGGTTGCGTTCCGTTCTTGGGTACCG
TAGGTTGCAAAAGATATCACACCCCTTGGACCGATTTTCAAAGCTCGATT
ATTCCGCGACGAAGAGGATGCCGAACTTGAAGTAAACGTTTTCGGAAAGC
TCTAGACCAGACGGTTCCAACGCCGCCTTTTTCGACACGGTCACTACTTT
TGCTGCCGAGACATCGAGTTGGTCCCGGAGGTGCGATATCGTATGCAACC
TACGGTAGCCCGAACATTGACTTTTGAAGGTCAACTAGCCATCTTTAACA
TGTTGATGCGAACAGGTTCCACGCAAAAACTCACACACGTCTGCGTGGAG
CAAGCGTCGTGAGCAGGCAGGCAGCAAAACCATTTCCCCGAAGCCTGTGT
CGCAACACACTCGAAGCTGTTATTACGGTGACGAAAATCTCGTGTGTTCA
TTGCGAAAACTCGTCTCGGTGACGGTCCCTCTTCATCGTGTTATCCTCAC
CAGATCCCAATCCCCATCTCCCTCCCTACAGAAATGCCAGCTTCGGTTTA
GGTGCCAACGCCAGGCATCGTGGTTGTAGAGACGCAAGTGCTTACCCTCC
TGGAATTCCCCCCCTGTTGCGACTGCCTCGTCCTCTCGAGGAAGCGGGGT
TGATGGTCTCTACGGCATGTAAATCATAGGAGAACGCTCCCTCCCCCCTC
AGCCGACTGGTTTACCTTCTCTGCATGCTTTCGTAGCTCCTCCGGGAGGA
ACAAGAGGCGAGAATGGTGGACATCTTCGGCATCCCGTTCAACTTGGTCA
TCCCCGACGGCGGGGCGGGAGGGGAGCCGGGGACAGCCGCCAGAGAAGCG
CAACAGTTGCGGAGGCTGAGTAAGTCTACCGTAAGAATGCGAGAGATCGC
TTGGGGGTGTAATCGATCTTGAAATGGTTTCGTTCTGGACTTCTTGAGAA
GTATATGTACACACAATCAAAGAGAGACGAACCGTTCGAGATAAAAAATT
CACATTCAAAGGAGGTGGTTATCCAACGGTGGTGTGATATCACCGGTACG
TGCGATATCATCGATCCCCGTGCGATAATCGAATCAAAATCAGTTACCCG
AATGTTTATTGCACGGGGGTGCGATATCACCGGTACTTGTGATGCAACCG
GAACGTGCTTTCTCTCGCATCCTCAGGGTACTACCACCGATCAAAGTCCC
TAAATATTTTTTACCATGTTAACCCAATACTTGCCGGTCAGTCTCGATTT
CCGGGGAAATAGCCTCTTCGGAATGTCCACCCGAGTTTCTTCAAGTCCCA
GAATCGATGCCGCCGTCACCAATGCTTGTTTTTCCAATCAAGCAGAGAGT
AATACCGCGTTCCCGCTCATTTTACCCATCGCGGCGCTCACTTTGTTTCA
CCCTTTCCGTGGAAGCGTTGAGTGTTGGCGGTAGGATAGTTACGCAAAAC
GCAGGGGGAGGGTGTCATGGACCATCCGTACCCACCGGCGCTCTTGAACC
CGGGCTCTCATCGTGCGGGAGCGAGGGCTTTTCGTTCACGGCTTTCCATC
TTGTTATTTTCCAAACGCAGGGTAGGAGCTCTGGCAGGGGGGAGCTGGGG
GATGGTGGTCGTGCTGCCGGGGAGGGAGGTCTGAAGCAGCAGCAGCAGCA
GCAGCTGGGGATTCGCGAATCTTTGAAGGCGAAAGCCGAATCGGACTTAC
GAGGTAGGAAGGCGAGGGAGGAGGAGATGTCGCCGGGGGCAACGCTCAAG
GTGGCCGCGCTGTGGCTCGTCCTGATATCCCAGGTAAAGTCTTCAGTCGA
CCGGTCTCTTTTTTGCTTTCCCCGCCCTCTTTCTGGCCCCCTCTTACCGT
AGGTTGCATAAGATATTACACACCCTGGGCCGATTTGTCAAAGCCCGGGA
ACTCCACAACGAGGTATTCCACAACGAGGGTAATGCCTACATCAAATTGT
GCGTTTTCGGAAAGCTCTCGACGTAAAGGCTCCGACATCACCATTCTGGG
CACAGTCCATGGTTGTGCTGCGGAGTAATCGAGCTTTGAAAATAGGTCCA
GGGGGGGGGCTTATGCAACCTTTGGCACACGCACACCTCGTCATGGCACC
CGCCATCTGGTTTCTCTACCTCCGCTTGTTCGCTCAGAAGCACGACCCCC
CGCGTCGGTGCCAGCTCTCCCGCCATGCCCTCTTATCAATCCTTCCCCCC
CCCTCCCCGTCTGCAGCTGTGGCTACTGGTGGTGCTGTGGAACGACCCAA
TGGGTCCCGCATCGTCGACATTTCTGCAAGACTGAGAAGGGCACGTTTGG
TTTTGTCTGTCGGTGTGAATAAGCAGAGCTGTACCAGGTTCGTCAGGCAG
GTATTAGGTCGGATCAGAGTTGCGCGTGGTGTGATATGGAACGTTTGTCC
ATGGAGGGGGGTTGACGAAGATTGCAGGGTAGGGATTCATGGTATGGTGC
GCGTGTGTGTTCTCCAGGTTGGTTCAGTGCCGGATAAGTCGATTATTCAT
GCCGTTCGGCTGCATCGAGATTTTTTTGCAGTGCGAGCATTATTTTAGGT
TCGCATTCGACACACTTCAATTGCGAGTGCGTCTGAGACAACGCGAATGC
GATTCCCCGTGCGTGCAAGTTGTCGACATAGATGTGACAGTCTTTCTGCC
AGACATGAATCATCGGCACAAAGGAAGAGGCGTCACAAAGGCTGTGTTTC
GCGGGACCGATCGTCCTGTGTACAATCACTTCAGATCGAATGTGACAACG
AGAGGCGGAGATAGGCGGTTGTAGATACATGTCGTTTCTCTGCGCAGAAC
TTATTCGGCAAAGCGTGGAGACGCGCGTCTCCTCGGGGTGTACGTTGCTG
TTGAAAACGAGAGGCAGCAAGAGCCTCAACTTAGAGAGGGCGAATAGCTT
CGCTTGTGCATGTTGCGCTTCTTCCTGGAATCACGCCTCAAGAGTAGCTT
GAGTGTTGTGTGAGATCAAGACGTGAAAAGAACTCTTAACAGCCTAGTGT
GTGAGGAGCGACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1891:914..5976+

>mRNA_Ecto-sp13_S_contig1891.5980.1 ID=mRNA_Ecto-sp13_S_contig1891.5980.1|Name=mRNA_Ecto-sp13_S_contig1891.5980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1101bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1891:914..5976+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGACGAGGTTGATGCTGTTGCTGGCGTTCCTCGACGCCGCTTCTTC
CTGGAGCGCGACGGCTACCGCTACCACCACCGTTGCCTTCAGTAGCCCCC
CCCGGATGTTGCTCGACTTCTCAACGCTGACAAGCTCTCGAAGACACGGC
GGTCAGAAGCATCAAATCGAACCTGACAACAGCAGCAGCAGCAGCGGACA
GCCTTGGACACCGATGCGGCCTCTGGCTCGAGAGAGGGCAACATTCGCGT
CGCGCACGAGGGAGCGAAGCTCAGCGACGCGCATGAGCAGTGCTCCTTCA
GGTGAAGGGCGGCGTGAGGTAAATCGCGTCGTGGGCAGTATCGCTCGGGG
CGGCAGCGTGGTAGCCTTCGTCACGGCGGCGTGCTCAGCTTTCCCCAGTT
GCTCCTCCGCAGCAGCAGCGGCAGCAGCAGCCATCGTTGGGGAAGCGGGC
GGGTCGGAAATGGGTGCGAGGGTGGACCCCGCTGCTACGACATCTTTCGC
CGCTGTTGTGGTGGCCTTCGCGTTTCTCCAGGCGCGGATTCGATCCGCTG
TAAGAGCGCGAACGGCACGGAGGGACTACGAAGTTCTCTTCAAAGGGATG
AAAGCAAAGCAACTCGCCGGACAGGCAAGCGCGGACGAGGAGGAAGTGAA
GCTGGTGGAGGAACGCATGTCGCAGCTCCTCCGGGAGGAACAAGAGGCGA
GAATGGTGGACATCTTCGGCATCCCGTTCAACTTGGTCATCCCCGACGGC
GGGGCGGGAGGGGAGCCGGGGACAGCCGCCAGAGAAGCGCAACAGTTGCG
GAGGCTGAGTAAGTCTACCGGTAGGAGCTCTGGCAGGGGGGAGCTGGGGG
ATGGTGGTCGTGCTGCCGGGGAGGGAGGTCTGAAGCAGCAGCAGCAGCAG
CAGCTGGGGATTCGCGAATCTTTGAAGGCGAAAGCCGAATCGGACTTACG
AGGTAGGAAGGCGAGGGAGGAGGAGATGTCGCCGGGGGCAACGCTCAAGG
TGGCCGCGCTGTGGCTCGTCCTGATATCCCAGCTGTGGCTACTGGTGGTG
CTGTGGAACGACCCAATGGGTCCCGCATCGTCGACATTTCTGCAAGACTG
A
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