prot_Ecto-sp13_S_contig1891.5980.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1891.5980.1
Unique Nameprot_Ecto-sp13_S_contig1891.5980.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length367
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1891.5980.1 vs. uniprot
Match: A0A6H5L6Y5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y5_9PHAE)

HSP 1 Score: 493 bits (1270), Expect = 1.080e-172
Identity = 305/366 (83.33%), Postives = 313/366 (85.52%), Query Frame = 0 
Query:    1 MLTRLMLLLAFLDAASSWSATATATTTVAFSSPPRMLLDFSTLTSSRRHGGQKHQIEPDNSSSSSGQPWTPMRPLARERATFASRTRERSSATRMSSAPSGEGRREVNRVVGSIARGGSVVAFVTAACSAFPSCSSXXXXXXXXIVGEAGGSEMGARVDPAATTSFAAVVVAFAFLQARIRSAVRARTARRDYEVLFKGMKAKQLAGQASADEEEVKLVEERMSQLLREEQEARMVDIFGIPFNLVIPDGGAGGEPGTAAREAQQLRRLSKSTGRSSGRGELGDGGRAAGEGGLKQQQQQQLGIRESLKAKAESDLRGRKAREEEMSPGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD 366
            MLTRLMLLLAFL  ASSWSATATA T                         QKHQI+PDNSSSSS QPWTPMRPL R RATFASR  ERSSATRMSSAPSGEGRRE NRVVGSIARGG VVAFV AACSAFPSCS XXXXXXXXIVGEAGGSEMGARVDPAAT SFAAVVVAFAFLQ+RIR+AVRARTARR+YEVLFKGMKAKQLAGQA  DE+EVKLVEERMSQLL+EEQEAR VDIFGIPFNLVIPDGGAGGEPGTAAREAQQ        GRSSGRGELGDGGRAAGEGG   QQQQQLGIRE++KAKAESDLRGRKAREEEMS GATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD
Sbjct:    1 MLTRLMLLLAFLHTASSWSATATAATXXXXXXXXXXXXXXXXXXXXXXXXXQKHQIDPDNSSSSSRQPWTPMRPLTRGRATFASRAGERSSATRMSSAPSGEGRREGNRVVGSIARGGDVVAFVAAACSAFPSCSXXXXXXXXXIVGEAGGSEMGARVDPAATASFAAVVVAFAFLQSRIRTAVRARTARRNYEVLFKGMKAKQLAGQA--DEKEVKLVEERMSQLLQEEQEARKVDIFGIPFNLVIPDGGAGGEPGTAAREAQQ--------GRSSGRGELGDGGRAAGEGG---QQQQQLGIRETMKAKAESDLRGRKAREEEMSTGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD 353
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BLAST of mRNA_Ecto-sp13_S_contig1891.5980.1 vs. uniprot
Match: D7FXN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN2_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 7.070e-32
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0 
Query:  301 QLGIRESLKAKAESDLRGRKAREEEMSPGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD 366
            QLGIRES+KAKAESDLR RKAREEEMSPGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD
Sbjct:   69 QLGIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD 134
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1891.5980.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6Y5_9PHAE1.080e-17283.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXN2_ECTSI7.070e-3296.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 202..229
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..12
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 181..329
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..160
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 330..352
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 353..366
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..24
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 161..180
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.827
NoneNo IPR availableTMHMMTMhelixcoord: 161..183
NoneNo IPR availableTMHMMTMhelixcoord: 330..352

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1891contigEcto-sp13_S_contig1891:1120..5248 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1891.5980.1mRNA_Ecto-sp13_S_contig1891.5980.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1891 914..5976 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1891.5980.1 ID=prot_Ecto-sp13_S_contig1891.5980.1|Name=mRNA_Ecto-sp13_S_contig1891.5980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=367bp
MLTRLMLLLAFLDAASSWSATATATTTVAFSSPPRMLLDFSTLTSSRRHG
GQKHQIEPDNSSSSSGQPWTPMRPLARERATFASRTRERSSATRMSSAPS
GEGRREVNRVVGSIARGGSVVAFVTAACSAFPSCSSAAAAAAAAIVGEAG
GSEMGARVDPAATTSFAAVVVAFAFLQARIRSAVRARTARRDYEVLFKGM
KAKQLAGQASADEEEVKLVEERMSQLLREEQEARMVDIFGIPFNLVIPDG
GAGGEPGTAAREAQQLRRLSKSTGRSSGRGELGDGGRAAGEGGLKQQQQQ
QLGIRESLKAKAESDLRGRKAREEEMSPGATLKVAALWLVLISQLWLLVV
LWNDPMGPASSTFLQD*
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