mRNA_Ecto-sp13_S_contig18894.5971.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18894.5971.1
Unique NamemRNA_Ecto-sp13_S_contig18894.5971.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18894.5971.1 vs. uniprot
Match: D8LM18_ECTSI (Eukaryotic translation initiation factor 3 subunit C n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM18_ECTSI)

HSP 1 Score: 629 bits (1622), Expect = 3.050e-217
Identity = 311/320 (97.19%), Postives = 311/320 (97.19%), Query Frame = 1
Query:    4 QAEHLYYQHESIARAVHKAQSFTNKFGKTEDLHPACTVASASAPSDGALDVTKGHPGAFLGQPSVDHEYADYTEQLKNLCVTVYQHGDDRCRTRAMLCHITHHALHDRFHPARDLLLMSHLQDNISQADISTQILYNRMMVTLGLCAFRKGLIHDAHDCLRDVCSSRVKELLAQGVQMNRFQDKNPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTELRRRVMSKHFRRYIDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILGLDVWNLIPGEGCAELVKAMVKEKIQVITRRRTLVQY 963
            QAEHLYYQHESIARAVHKAQSFTNKFGKTEDLHPACTVASASAPSDGALDVTK HPGAFLGQPSVDHEYADYTEQLKNLCVTVYQHGDDRCRTRAMLCHITHHALHDRFHPARDLLLMSHLQDNISQADISTQILYNRMMVTLGLCAFRKGLIHDAHDCLRDVCSSRVKELLAQGVQMNRFQDKNPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTELRRRVMSKHFRRYIDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILGLDVWNLIPGEGCAELVK MVKEKIQV   R  L  Y
Sbjct:  535 QAEHLYYQHESIARAVHKAQSFTNKFGKTEDLHPACTVASASAPSDGALDVTKAHPGAFLGQPSVDHEYADYTEQLKNLCVTVYQHGDDRCRTRAMLCHITHHALHDRFHPARDLLLMSHLQDNISQADISTQILYNRMMVTLGLCAFRKGLIHDAHDCLRDVCSSRVKELLAQGVQMNRFQDKNPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTELRRRVMSKHFRRYIDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILGLDVWNLIPGEGCAELVKVMVKEKIQVEALRTYLFTY 854          
BLAST of mRNA_Ecto-sp13_S_contig18894.5971.1 vs. uniprot
Match: A0A835YUE3_9STRA (Eukaryotic translation initiation factor 3 subunit C n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUE3_9STRA)

HSP 1 Score: 444 bits (1143), Expect = 5.350e-145
Identity = 221/320 (69.06%), Postives = 256/320 (80.00%), Query Frame = 1
Query:    4 QAEHLYYQHESIARAVHKAQSFTNKFGKTEDLHPACTVASASAPSDGALDVTKGHPGAFLGQPSVDHEYADYTEQLKNLCVTVYQHGDDRCRTRAMLCHITHHALHDRFHPARDLLLMSHLQDNISQADISTQILYNRMMVTLGLCAFRKGLIHDAHDCLRDVCSSRVKELLAQGVQMNRFQDKNPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTELRRRVMSKHFRRYIDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILGLDVWNLIPGEGCAELVKAMVKEKIQVITRRRTLVQY 963
            Q EHLYY+H+SIA AVH++Q+FT  +G    LHPAC     + P+  + D    HP A LG P+V+    DY   +++LCV +Y+HG DR +TRAMLCHITHHALH RFH ARDLLLMSHLQDNIS  D+ TQILYNRMMVTLGLCAFR GLI DAHDCLRDVCSSRVKELLAQG+Q NRFQ+KNPEQEKAERRRQ PYHMHINLDLLECCHLT+AML EVP MA+E  E+RRR +SK FRR++D F+ QVFTGPPENIRDHVIA AK LM+GDW++C+D+ILGLDVWNLIPGEG  E VK M++EKIQ+   R  L  Y
Sbjct:  546 QVEHLYYKHDSIALAVHRSQAFTAVYGSPAMLHPACL---GTGPAATSADYAVVHPAAALGAPTVEVVPMDYAALMRDLCVFLYKHGGDRAKTRAMLCHITHHALHGRFHAARDLLLMSHLQDNISMVDVDTQILYNRMMVTLGLCAFRLGLIADAHDCLRDVCSSRVKELLAQGIQQNRFQEKNPEQEKAERRRQMPYHMHINLDLLECCHLTAAMLREVPTMARERGEIRRRHISKLFRRHMDNFDHQVFTGPPENIRDHVIAGAKSLMQGDWRKCADMILGLDVWNLIPGEGQGEKVKVMLREKIQLEALRTYLFTY 862          
BLAST of mRNA_Ecto-sp13_S_contig18894.5971.1 vs. uniprot
Match: A0A7S2BS49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BS49_9STRA)

HSP 1 Score: 408 bits (1049), Expect = 1.090e-134
Identity = 206/320 (64.38%), Postives = 244/320 (76.25%), Query Frame = 1
Query:   10 EHLYYQHESIARAVHKAQSFTNKFGKTEDLHPACTVASASAPSDGALDVTKGHPGAFLGQPSVDHEYADYTEQLKNLCV-TVYQHGDDRCRTRAMLCHITHHALHDRFHPARDLLLMSHLQDNISQADISTQILYNRMMVTLGLCAFRKGLIHDAHDCLRDVCSSRVKELLAQGVQMNRFQDKNPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTELRRRVMSKHFRRYIDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILG-LDVWNLIPGEGCAELVKAMVKEKIQVITRRRTLVQY 963
            EH YY+H+SIA AV KAQ F  K+G+  DLHPAC   +A+  S+   +    HP A  G+P++D  + D    +K LC   VY+HGDDR RTRAMLCHI HHALHDRF+ ARDLLLMSHLQ+NI   D++TQIL+NR MV LGLCAFR GLI +AH CL D+CSSR KELLAQGVQ  R+ DKNPEQEKAERRRQTPYHMHINL+LLE CHLT+AMLLEVPNMA E    R RV+S+HFR+Y+D F+RQVFTGPPEN+RDHV+ AAK L  GDWKRC+DLIL  +D+WNLIPGE  A+ VK M+K+KI+    R  L  Y
Sbjct:  295 EHTYYKHDSIAEAVFKAQKFAEKWGQYADLHPACLSPTAALSSEVKPETL--HPAAMGGKPAIDAVFEDQAVLIKELCHRVVYKHGDDRTRTRAMLCHIAHHALHDRFYDARDLLLMSHLQENIGHTDVTTQILFNRAMVMLGLCAFRLGLIFEAHQCLSDICSSRYKELLAQGVQSMRYSDKNPEQEKAERRRQTPYHMHINLELLEGCHLTAAMLLEVPNMATEELSERPRVISRHFRKYMDFFDRQVFTGPPENVRDHVLTAAKSLTTGDWKRCADLILDKMDIWNLIPGENAAQKVKDMLKDKIKCEALRTYLFAY 612          
BLAST of mRNA_Ecto-sp13_S_contig18894.5971.1 vs. uniprot
Match: A0A7S2SSJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSJ9_9STRA)

HSP 1 Score: 394 bits (1012), Expect = 1.320e-132
Identity = 202/320 (63.12%), Postives = 239/320 (74.69%), Query Frame = 1
Query:   10 EHLYYQHESIARAVHKAQSFTNKFGKTEDLHPACTVASASAPSDGALDVTKGHPGAFLGQPSVDHEYADYTEQLKNLC-VTVYQHGDDRCRTRAMLCHITHHALHDRFHPARDLLLMSHLQDNISQADISTQILYNRMMVTLGLCAFRKGLIHDAHDCLRDVCSSRVKELLAQGVQMNRFQDKNPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTELRRRVMSKHFRRYIDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILG-LDVWNLIPGEGCAELVKAMVKEKIQVITRRRTLVQY 963
            EHLYY+H+SIA AV KAQ F + +G   DLHPAC  AS S   DG ++    HP A  GQP V+++  D+   +  L    +++HGD R RTRAMLC + HHALHDRF+ ARDLLLMSH+QDNI   D+ TQIL+NR MV LGLCAFR GLI DAH CL DVCSSRV+ELLAQG+Q  RF DKNPEQE+AERRRQTPYHMHINLDLLE CHL SAMLLEVPNMA E    R R +S+HFR+++DI  RQVFTGPPEN RDHV+ AA+ LM GDWKRC+ L+L  L+VWNLI GEGCA+ VK M+++KI+    R  L  Y
Sbjct:   32 EHLYYKHDSIAYAVGKAQLFADTYGSVGDLHPACKGASKS--EDGPVNSGTVHPAAAAGQPVVEYDMEDWASVIAALNNQIIFKHGDVRTRTRAMLCQVAHHALHDRFYEARDLLLMSHIQDNIMNTDVHTQILFNRTMVMLGLCAFRAGLIWDAHQCLTDVCSSRVRELLAQGMQSARFSDKNPEQERAERRRQTPYHMHINLDLLEACHLISAMLLEVPNMATEEVGERGRTLSRHFRKHMDIMKRQVFTGPPENTRDHVLVAARALMHGDWKRCASLVLDDLEVWNLIVGEGCAQAVKDMLRKKIKSEALRTFLFAY 349          
BLAST of mRNA_Ecto-sp13_S_contig18894.5971.1 vs. uniprot
Match: A0A7S2HV13_9STRA (Eukaryotic translation initiation factor 3 subunit C n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HV13_9STRA)

HSP 1 Score: 395 bits (1016), Expect = 8.190e-127
Identity = 199/320 (62.19%), Postives = 238/320 (74.38%), Query Frame = 1
Query:   10 EHLYYQHESIARAVHKAQSFTNKFGKTEDLHPACTVASASAPSDGALDVTKGHPGAFLGQPSVDHEYADYTEQLKNLCVTV-YQHGDDRCRTRAMLCHITHHALHDRFHPARDLLLMSHLQDNISQADISTQILYNRMMVTLGLCAFRKGLIHDAHDCLRDVCSSRVKELLAQGVQMNRFQDKNPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTELRRRVMSKHFRRYIDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILG-LDVWNLIPGEGCAELVKAMVKEKIQVITRRRTLVQY 963
            EH+YY H+SIA AV KAQ F  K+G   DLHPAC  + A +  DG  D    HP +  G+P++  +  D    ++  C  V Y+HGDDR RTRAMLCHI HHA HDRF+ ARDLLLMSHLQ++I  AD+ TQIL+NR MV LGLCAFR GLI DAH CL D+CSSRVKELLAQG+Q  R+ +KNPEQE AERRRQTPYHMHINLDLLE CHLT+AMLLEVPNMA E    R RV+S+HFR+++D + RQVFTGPPEN+RDHV+AAAK L  G+WK+C++LIL  +D+WNLIPGE   E VK M+ EKI+    R  L  Y
Sbjct:  503 EHVYYMHDSIAAAVFKAQKFAEKWGAYSDLHPACMSSDAGS-EDGKFDAASVHPASIGGKPTITDKLEDVGAFIQEQCHRVIYKHGDDRTRTRAMLCHIAHHAAHDRFYEARDLLLMSHLQEHIGHADVHTQILFNRAMVMLGLCAFRAGLIWDAHQCLSDICSSRVKELLAQGLQSMRYSEKNPEQENAERRRQTPYHMHINLDLLEGCHLTAAMLLEVPNMATEDVSERPRVISRHFRKHMDFYERQVFTGPPENVRDHVLAAAKALTTGEWKKCTELILDDMDIWNLIPGEKSGEAVKKMLLEKIKAEALRTYLFAY 821          
BLAST of mRNA_Ecto-sp13_S_contig18894.5971.1 vs. uniprot
Match: A0A7S4E4E4_9STRA (Eukaryotic translation initiation factor 3 subunit C n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E4E4_9STRA)

HSP 1 Score: 393 bits (1009), Expect = 5.210e-126
Identity = 201/324 (62.04%), Postives = 237/324 (73.15%), Query Frame = 1
Query:   10 EHLYYQHESIARAVHKAQSFTNKFGKTEDLHPACTVASASAPSDGALDVTKGHPGAFLGQPSVDH-EYADYTEQLKNLCVTVYQHGDDRCRTRAMLCHITHHALHDRFHPARDLLLMSHLQDNISQADISTQILYNRMMVTLGLCAFRKGLIHDAHDCLRDVCSSRVKELLAQGVQMNRFQDKNPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTEL--------RRRVMSKHFRRYIDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILGLDVWNLIPGEGCAELVKAMVKEKIQVITRRRTL 954
            EH+YY+H+SIA AV  AQ+F   +G  +D+H A   A+A     G   V K HPG++LG P+    +  D  + LK LC  VY HGDDRCRTRA+LCH+ HHALH RFH ARDLLLMSHLQ+    ADI TQILYNR MV LGLCAFR GL+HDAH CL ++CSSRVKELLAQGVQ  R+ DK+ EQEKAERRRQTPYHMH+NLDLLECCHLTSAMLLEVP M  E            R RV S+HFR+++DIF+RQVFTGPPEN RDH++ AAK L  GDW+ C+ L++ LDVW+LIPG G AE VKAMV+EKI+    R  L
Sbjct:  504 EHMYYKHDSIAEAVRDAQAFRAAWGSRDDVHAASRKATA-----GVSTVEKSHPGSWLGAPTTPSTDSCDTAKSLKELCGYVYDHGDDRCRTRALLCHVAHHALHGRFHAARDLLLMSHLQEVAHDADIETQILYNRAMVLLGLCAFRSGLVHDAHSCLAEICSSRVKELLAQGVQSARWSDKSDEQEKAERRRQTPYHMHVNLDLLECCHLTSAMLLEVPAMVVEEARNKQLRGAPPRTRVTSRHFRKHMDIFSRQVFTGPPENTRDHILCAAKALALGDWRECARLVVELDVWDLIPGTGEAEKVKAMVREKIKAEALRTYL 822          
BLAST of mRNA_Ecto-sp13_S_contig18894.5971.1 vs. uniprot
Match: A0A7S2UU87_9STRA (Eukaryotic translation initiation factor 3 subunit C n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU87_9STRA)

HSP 1 Score: 382 bits (981), Expect = 1.920e-121
Identity = 190/319 (59.56%), Postives = 239/319 (74.92%), Query Frame = 1
Query:   10 EHLYYQHESIARAVHKAQSFTNKFGKTEDLHPACTVASASAPSDGALDVTKGHPGAFLGQPSVDHE-YADYTEQLKNLCVTVYQHGDDRCRTRAMLCHITHHALHDRFHPARDLLLMSHLQDNISQADISTQILYNRMMVTLGLCAFRKGLIHDAHDCLRDVCSSRVKELLAQGVQMNRFQDKNPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTELRRRVMSKHFRRYIDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILGLDVWNLIPGEGCAELVKAMVKEKIQVITRRRTLVQY 963
            EH YY+H+SIA AV +AQSFT  +G    LHP C    A    +G LD    HP + LG P+ D     D  +++ ++ + +Y+HGDDR RTRAMLCHITHHA+HDRFH ARDLL MSHLQD I   D+STQIL+NR MV LGLCAFR G+I + H C+ +VCS R KELLAQGVQ +R+ ++NPE+EKAE+RRQ PYHMHINLDLLECCHLT+AMLLEVPN+A +    R++V+S+HFR+  DI++RQVFTGPPEN RDHV+A+A+ L EG W++ + L+LGLDVWNLIPGEG A  VK M++EK++V   R  L  Y
Sbjct:  546 EHTYYKHDSIALAVQRAQSFTALWGDRALLHPGCV---ACTKMEGKLDAETCHPASALGTPTCDFSSLPDMAQEVSDMALFIYRHGDDRLRTRAMLCHITHHAMHDRFHQARDLLFMSHLQDTIGHTDVSTQILFNRAMVLLGLCAFRAGMILEGHYCMTEVCSGRTKELLAQGVQQSRYHERNPEKEKAEKRRQMPYHMHINLDLLECCHLTAAMLLEVPNIALDPG--RKKVISRHFRKCRDIYSRQVFTGPPENTRDHVMASAQALEEGQWRQAAKLLLGLDVWNLIPGEGSAAKVKVMLEEKLKVEALRTYLFTY 859          
BLAST of mRNA_Ecto-sp13_S_contig18894.5971.1 vs. uniprot
Match: F0Y6I4_AURAN (PCI domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6I4_AURAN)

HSP 1 Score: 377 bits (968), Expect = 8.250e-121
Identity = 194/326 (59.51%), Postives = 230/326 (70.55%), Query Frame = 1
Query:   10 EHLYYQHESIARAVHKAQSFTNKFGKTEDLHPACTVASASAPSDGALDVTKGHPGAFLGQPSV------DHEYADYTEQLKNLCVTVYQHGDDRCRTRAMLCHITHHALHDRFHPARDLLLMSHLQDNISQADISTQILYNRMMVTLGLCAFRKGLIHDAHDCLRDVCSSRVKELLAQGVQMNRFQDKNPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTEL--RRRVMSKHFRRYIDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILGLDVWNLIPGEGCAELVKAMVKEKIQVITRRRTLVQY 963
            EH+YY+HESIA AV  AQ++                           D +K HPGA+LG  +       D    D +  ++ LC  VY HGDDRCRTRA+LCH+ HHALH RF+ ARDLLLMSHLQD    +D+ TQILYNR MV LGLCAFR GLIHDAH CL ++CSSRVKELLAQG+Q  RF DKNPEQEKAERRRQTPYHMHINLDLLECCHLT+AMLLEVPNM+ E+      +R +S+HFR+++DIFNRQVFTGPPEN RDHV+ AAK L  GDWK C+DL+L LDVW L+PG G  + VKAM+++KI+    R  L  Y
Sbjct:  431 EHMYYKHESIASAVRDAQAYRAN----------------------ERDSSKSHPGAWLGAATAAATAPDDEVVGDASASVRKLCEYVYAHGDDRCRTRALLCHVAHHALHGRFYVARDLLLMSHLQDTAYMSDVETQILYNRSMVMLGLCAFRNGLIHDAHACLAEICSSRVKELLAQGMQSARFSDKNPEQEKAERRRQTPYHMHINLDLLECCHLTAAMLLEVPNMSVEAGGAGGHKRPISRHFRKHLDIFNRQVFTGPPENTRDHVLCAAKALGVGDWKTCADLVLRLDVWALVPGAGEGDRVKAMIEDKIKAEALRTYLFAY 734          
BLAST of mRNA_Ecto-sp13_S_contig18894.5971.1 vs. uniprot
Match: A0A7R9W1A8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W1A8_9STRA)

HSP 1 Score: 368 bits (945), Expect = 7.750e-120
Identity = 197/328 (60.06%), Postives = 234/328 (71.34%), Query Frame = 1
Query:   10 EHLYYQHESIARAVHKAQSFTNKFGKTEDLHPACTVASASAPSDGALDVTKGHPGAFLGQPSVDHEYA--DYTEQLKNLCVTVYQHGDDRCRTRAMLCHITHHALHDRFHPARDLLLMSHLQDNISQA-DISTQILYNRMMVTLGLCAFRKGLIHDAHDCLRDVCSSRVKELLAQGVQMNRFQDKNPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTE-------LRRRVMSKHFRRYIDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILGLDVWNLIPGEGCAELVKAMVKEKIQVITRRRTLVQY 963
            EHLYY+H++IA  V +A  F   +G+   LHPAC  A A     G  D  K HP A LG+PSV       D ++ + +LC  VY+HG DR +TRAMLCHI HHALHDRF  ARDLLLMSHLQD IS A D+ST IL+NRMMVTLGL AFR G I DAH CL DVCS RV+ELLAQGV   RF DK  EQEKAE+RRQTPYHMH+NLDLLE CHL+SAMLLEVPNMA    +        R RV+S+ FR++ DI++RQVFTGPPE  RD V+ A++ L+ GDWKRCSDL+ GL+VW L+PGEG AE +K+M+ EKI+V   R  L  Y
Sbjct:  195 EHLYYRHDTIAEGVDRAALFHETYGEAGLLHPACVSADADD-FKGNGDAEKCHPAASLGRPSVAEASVTVDSSKVINDLCTYVYRHGSDRSKTRAMLCHIFHHALHDRFLEARDLLLMSHLQDTISNAGDVSTMILFNRMMVTLGLSAFRLGRIWDAHQCLSDVCSGRVRELLAQGVSTGRFSDKTAEQEKAEKRRQTPYHMHVNLDLLEACHLSSAMLLEVPNMAAAGVDGENAPNNRRARVISRTFRKHHDIYDRQVFTGPPEQTRDFVMVASRALLRGDWKRCSDLLGGLEVWALVPGEGSAEKIKSMLAEKIKVEGLRTYLFAY 521          
BLAST of mRNA_Ecto-sp13_S_contig18894.5971.1 vs. uniprot
Match: A0A7S1ZGV2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZGV2_TRICV)

HSP 1 Score: 357 bits (916), Expect = 9.290e-118
Identity = 184/323 (56.97%), Postives = 229/323 (70.90%), Query Frame = 1
Query:   10 EHLYYQHESIARAVHKAQSFTNKFGKTEDLHPACTVASASAPSDGALDVTKGHPGAFLGQPSVDHEY--------ADYTEQLKNLCVTVYQHGDDRCRTRAMLCHITHHALHDRFHPARDLLLMSHLQDNISQA-DISTQILYNRMMVTLGLCAFRKGLIHDAHDCLRDVCSSRVKELLAQGVQMNRFQDKNPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTE-------LRRRVMSKHFRRYIDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILGLDVWNLIPGEGCAELVKAMVKEKIQ 930
            EH+YY+H++IA  V +A +F  K+G+   +HPA      S   +G  D +  HP A  G+P+V+            D  +Q+++LC  VY HG DR RTRAMLCHI HHALHDRF  ARDLLLMSHLQD I+ A D+ST IL+NRMMV LGL AFR G + D H CL DVCS RV+ELLAQGV   RF DK+ EQEKAE+RRQ PYH H+NLDLLE CHL SAMLLEVPNMAQ+  +        R RV+S+ FR++ DI++RQVFTGPPE  RD V+ AAK L +GDWKRC+DL+ GLD WNL+PGEG A+ +++M+ EKI+
Sbjct:   63 EHVYYRHDTIAEQVDRAAAFYGKYGEASLIHPASI---GSEEGEGKTDYSVTHPAAASGRPTVEKAMEESPADIVVDSEKQMQDLCSFVYAHGSDRSRTRAMLCHIYHHALHDRFLQARDLLLMSHLQDTIANAGDVSTMILFNRMMVALGLSAFRLGRVWDTHQCLSDVCSGRVRELLAQGVSAGRFNDKSAEQEKAEKRRQVPYHQHVNLDLLEACHLISAMLLEVPNMAQQGADGAAEGSGRRVRVVSRQFRKHHDIYDRQVFTGPPEQTRDFVMTAAKALAKGDWKRCADLLTGLDAWNLVPGEGSADAIRSMLVEKIK 382          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18894.5971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM18_ECTSI3.050e-21797.19Eukaryotic translation initiation factor 3 subunit... [more]
A0A835YUE3_9STRA5.350e-14569.06Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2BS49_9STRA1.090e-13464.38Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2SSJ9_9STRA1.320e-13263.13Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2HV13_9STRA8.190e-12762.19Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S4E4E4_9STRA5.210e-12662.04Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2UU87_9STRA1.920e-12159.56Eukaryotic translation initiation factor 3 subunit... [more]
F0Y6I4_AURAN8.250e-12159.51PCI domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A7R9W1A8_9STRA7.750e-12060.06Hypothetical protein (Fragment) n=2 Tax=Pseudictyo... [more]
A0A7S1ZGV2_TRICV9.290e-11856.97Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18894contigEcto-sp13_S_contig18894:243..3146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score632.5
Seed ortholog evalue1.1e-178
Seed eggNOG ortholog2880.D8LM18
Preferred nameEIF3C
Model size963
KEGG koko:K03252,ko:K08597
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0031369,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons5
EggNOG free text desc.Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
EggNOG OGsKOG1076@1,KOG1076@2759
Ec32 ortholog descriptionEIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3 subunit c)
Ec32 orthologEc-14_002510.1
EC3.4.22.68
Cds size963
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03012,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462965.0490248-CDS-Ecto-sp13_S_contig18894:242..4521681462965.0490248-CDS-Ecto-sp13_S_contig18894:242..452Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18894 243..452 +
1681462965.060254-CDS-Ecto-sp13_S_contig18894:1040..13791681462965.060254-CDS-Ecto-sp13_S_contig18894:1040..1379Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18894 1041..1379 +
1681462965.0695722-CDS-Ecto-sp13_S_contig18894:1754..19581681462965.0695722-CDS-Ecto-sp13_S_contig18894:1754..1958Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18894 1755..1958 +
1681462965.0865786-CDS-Ecto-sp13_S_contig18894:2308..24091681462965.0865786-CDS-Ecto-sp13_S_contig18894:2308..2409Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18894 2309..2409 +
1681462965.0986216-CDS-Ecto-sp13_S_contig18894:3037..31461681462965.0986216-CDS-Ecto-sp13_S_contig18894:3037..3146Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18894 3038..3146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18894.5971.1prot_Ecto-sp13_S_contig18894.5971.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18894 243..3146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18894.5971.1

>prot_Ecto-sp13_S_contig18894.5971.1 ID=prot_Ecto-sp13_S_contig18894.5971.1|Name=mRNA_Ecto-sp13_S_contig18894.5971.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=321bp
TQAEHLYYQHESIARAVHKAQSFTNKFGKTEDLHPACTVASASAPSDGAL
DVTKGHPGAFLGQPSVDHEYADYTEQLKNLCVTVYQHGDDRCRTRAMLCH
ITHHALHDRFHPARDLLLMSHLQDNISQADISTQILYNRMMVTLGLCAFR
KGLIHDAHDCLRDVCSSRVKELLAQGVQMNRFQDKNPEQEKAERRRQTPY
HMHINLDLLECCHLTSAMLLEVPNMAQESTELRRRVMSKHFRRYIDIFNR
QVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILGLDVWNLIPGEGCAEL
VKAMVKEKIQVITRRRTLVQY
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mRNA from alignment at Ecto-sp13_S_contig18894:243..3146+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18894.5971.1 ID=mRNA_Ecto-sp13_S_contig18894.5971.1|Name=mRNA_Ecto-sp13_S_contig18894.5971.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2904bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18894:243..3146+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCAGGCCGAGCACCTGTACTACCAGCACGAGTCCATCGCCCGCGCGGT GCACAAGGCGCAGTCTTTCACCAACAAGTTCGGGAAGACGGAGGACCTTC ACCCGGCCTGCACGGTCGCCTCGGCCTCCGCCCCCTCCGACGGCGCCCTC GACGTGACCAAGGGCCACCCCGGGGCTTTCCTCGGACAGCCGTCTGTGGA CCATGAATACGTGCGTTTGTTTCCCCCGTGGCCGTTTGCGTTTTGTTGTG TCTTCCTGGGTAACGTGTCGTTTTTGGCTTCCACGTTTCTTTGGTCTTTT GAGCTTCAAGTTTGTTGTTAACGGCGGACATGATAGTTTTGTGCATCGTT TTTTTTTTTTTAAGATGACGTCTTTTTCCGTCCGGCTTGCTTGCTGTTGC TCCATGAATGCGTGCCTTTCCCCTTGTCTTGTCTCTCTCTCTCTGTCTCT GGCTTTTCTCGAGATAAGTCGAATACCATCATTTTTGTTTTTTTTTTCCT TTTCGTCTTTTTGAATTCGTTGAAGTTTGTTGACGGTGGACAAGAGAGCC TCTTGTGGGTCACCAAACATAACGATTTTGGTCGTGCATTTTGTTGCTTT TATTGGCGTGTCGATGCTCCTTGTTGCGTCCCCAAGGGCCACGACCCTCT TTAGTAGTCCACCCAGACGCCTCGCCCGCGTCCGCCTTTTTTTTTCCGAT TTTTTGTGTCCGTTTTGTTTGTCACCACTACTTGAAATGCTTCCTGGGCA AACTTTTGATCCCTGTACCCCTTCACCGCTGTTGCTACTACTACACAGGC GGACTACACGGAGCAGCTCAAGAACCTGTGCGTGACCGTGTACCAGCACG GCGACGACCGCTGCCGCACGCGCGCCATGCTCTGCCACATCACCCACCAC GCGCTCCACGACCGCTTCCACCCGGCCCGGGACCTGCTGCTGATGAGCCA CCTGCAGGACAACATCAGCCAGGCTGACATCTCGACGCAGATTCTCTACA ACCGGATGATGGTGACGCTGGGGCTGTGCGCGTTCCGCAAGGGGCTCATC CACGACGCGCACGACTGCCTGAGGGACGTCTGCTCCTCGAGAGTCAAGGA ACTGCTGGCTCAGGGCGTGCAGATGAACCGCTTCCAGGTGAGAGAAATGA TACGACGGAGTGGCTTGGGGGCGGGGAGGGGGGGCGTAGAGTTGGTGTTC TTTTTCGCATTGTTGTCGTCGTGCCGCAGTCGAAGAGGTTGGGGCACCGT ACGTCGGAATTGGTCGTTTTTAAAATCGAAAAGTTCGTGTTTGTACACGT CCTTGATTCCCCTCAATCCAAGTTGCTTCGTCTAGGAGGTCCAAATACAC AAGAGATATACAAGCAGCGGACTCCCCCCGCCCCATTAGCGTGCGCCGTA GGCGCCCGGCCCGGCCCCTTTTTGTGAGCACCCCCTGCTCAATGACTCTG GCGCGCCTCTCGTTTCGTTACTCGTGATACAATGTTCGGGACTACAATAA AAATACGTTCAGGACAAGAACCCTGAGCAGGAGAAGGCCGAGCGCCGAAG GCAGACTCCGTACCACATGCACATCAACCTCGACCTCCTTGAGTGCTGCC ACCTCACGAGCGCCATGCTCCTGGAGGTGCCTAATATGGCGCAGGAGTCG ACGGAGCTGCGCCGGCGGGTCATGTCCAAGCACTTCCGCCGCTACATCGA CATCTTTAACCGCCAGGTTTAATGTTTTATGGTGTTCTTGCTCTCTATTT TGAGTATTGCTTGGGGCATGTGTTGTTCTTATCGTTGTCGTTGTTGCCTT CACATTAAGGACCGTTCCGGTTTCTGCTCAGCACCTTCTAATGTCCGTAC ATGTGTAGCCTAGGGTTTTGATTGGCGTGTTTTTTAACACTAAGGCTGTA CGCTGTCAGCTTTTCTGTCGAGGCCCGACTGTACGCTGGAAGCTTTTCCC TCTCTGGTATGTTCCTGGCTGTCACTGTATTCATACCCGGTAGTGGTTCA TCCTCTGGTGAGATACACACTAACATACATCCCCCCCCTCCCCCCCCCTT CCTCTGCCCTGAAAAGGTGTTCACTGGCCCCCCGGAGAACATCCGCGACC ACGTGATCGCCGCCGCGAAGAGGTTGATGGAGGGCGACTGGAAGCGTTGC TCAGACCTTATCTTGGGGTAAGTAGAGCACTCTCTTGTCGGTGCCGGCGT TTCTTATTTTTTCTTTCCTCTGTTGTCTTTTCCCTTATAAACGTTCTCAC CTGGAAGACCCTACTTCCCCGTTCGCTGCCTCTCAGAGTGCACTCGTTCT GGAAAGGTTTTGTGCGTTTCGTATACGCATCGGGTACTTACCCTGTAACA ACAGACCTGGTTTTTGTTTCTGTCACCCATTTTACGGAGCAGGGGTTGTG CCGATCCTTGCTTTTAATAGGGAGCTCATTTGTTGTGGATCCGTGTGTTG CGTGGCGCTGCTGCTGGTGTTGTGCGTCGCACACACGGAGTTCAAATTCG CGTTGGGTCCGATATCACCTCATGGGATGTTTTCTCGTGTCTGTCGTTTA TTCGTTATGCACTCGAAAGGAAAGCTTTCGTTTTTTTCCGACGCGTTCGT CTCTCCGCTCTGAGCCACGGGCTTATAGATTGGTCCTACGTTGACTTGCC GTATGCGTAGGAAAGCTGTGTACGCATACATGCCCAAGACGGAGCCGGTG ATTCTTGGCTCAAGCTTAGTACCATGCCGCGTTTGACAATCGTTTCTTTT TTTTGTCTTCCGTGTCGGTCGAAAATTTTGTCCTCTTTCGTGCAGGCTGG ACGTCTGGAACTTGATCCCCGGGGAAGGCTGCGCCGAGCTCGTCAAGGCT ATGGTGAAGGAGAAGATCCAGGTAATCACACGCCGCCGTACTCTTGTACA ATAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18894:243..3146+

>mRNA_Ecto-sp13_S_contig18894.5971.1 ID=mRNA_Ecto-sp13_S_contig18894.5971.1|Name=mRNA_Ecto-sp13_S_contig18894.5971.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18894:243..3146+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCAGGCCGAGCACCTGTACTACCAGCACGAGTCCATCGCCCGCGCGGT
GCACAAGGCGCAGTCTTTCACCAACAAGTTCGGGAAGACGGAGGACCTTC
ACCCGGCCTGCACGGTCGCCTCGGCCTCCGCCCCCTCCGACGGCGCCCTC
GACGTGACCAAGGGCCACCCCGGGGCTTTCCTCGGACAGCCGTCTGTGGA
CCATGAATACGCGGACTACACGGAGCAGCTCAAGAACCTGTGCGTGACCG
TGTACCAGCACGGCGACGACCGCTGCCGCACGCGCGCCATGCTCTGCCAC
ATCACCCACCACGCGCTCCACGACCGCTTCCACCCGGCCCGGGACCTGCT
GCTGATGAGCCACCTGCAGGACAACATCAGCCAGGCTGACATCTCGACGC
AGATTCTCTACAACCGGATGATGGTGACGCTGGGGCTGTGCGCGTTCCGC
AAGGGGCTCATCCACGACGCGCACGACTGCCTGAGGGACGTCTGCTCCTC
GAGAGTCAAGGAACTGCTGGCTCAGGGCGTGCAGATGAACCGCTTCCAGG
ACAAGAACCCTGAGCAGGAGAAGGCCGAGCGCCGAAGGCAGACTCCGTAC
CACATGCACATCAACCTCGACCTCCTTGAGTGCTGCCACCTCACGAGCGC
CATGCTCCTGGAGGTGCCTAATATGGCGCAGGAGTCGACGGAGCTGCGCC
GGCGGGTCATGTCCAAGCACTTCCGCCGCTACATCGACATCTTTAACCGC
CAGGTGTTCACTGGCCCCCCGGAGAACATCCGCGACCACGTGATCGCCGC
CGCGAAGAGGTTGATGGAGGGCGACTGGAAGCGTTGCTCAGACCTTATCT
TGGGGCTGGACGTCTGGAACTTGATCCCCGGGGAAGGCTGCGCCGAGCTC
GTCAAGGCTATGGTGAAGGAGAAGATCCAGGTAATCACACGCCGCCGTAC
TCTTGTACAATAC
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