mRNA_Ecto-sp13_S_contig18890.5970.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig18890.5970.1
Unique Name	mRNA_Ecto-sp13_S_contig18890.5970.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig18890.5970.1 vs. uniprot
Match: A0A6H5JCQ0_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ0_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 2.640e-44
Identity = 80/116 (68.97%), Postives = 94/116 (81.03%), Query Frame = -3

Query:  177 GPECKDRV-LVAECALYNKERDVYMTGLGKVEGRYKKMFGAWHSEDKTVAVPGHCKRVETAGREIERTARLWHTFLSHLWQSRKERLAIGDRSCGNNRPSSRQGVINDLTAKTWKT 521
            G EC+DRV +VAEC LY KER+VY+T LGK++G Y++MF AW+ E++TVAV GH + VE AGR+I R  RL  TFLSHLWQSRKERLAIGDRSCGNN PSSR  V+N LTAKT KT
Sbjct:  148 GFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKTCKT 263

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BLAST of mRNA_Ecto-sp13_S_contig18890.5970.1 vs. uniprot
Match: A0A6H5L729_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L729_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.530e-43
Identity = 84/129 (65.12%), Postives = 98/129 (75.97%), Query Frame = -3

Query:  153 GPECKDRV-LVAECALYNKERDVYMTGLGKVEGRYKKMFGAWHSEDKTVAVPGHCKRVETAGREIERTARLWHTFLSHLWQSRKERLAIGDRSCGNNRPSSRQGVINDLTAKTWKT*ENSP-----PPL 521
            G EC+DRV +VAEC LY KER+VY+T LGK++G Y++MF AW+ E++TVAV GH + VE AGR+I R  RL  TFLSHLWQSRKERLAI DRSCGNN PSSR  V+NDLTAK  KT E  P     PPL
Sbjct:  203 GFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIRDRSCGNNAPSSRARVVNDLTAKACKTEEYVPSLPNLPPL 331

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BLAST of mRNA_Ecto-sp13_S_contig18890.5970.1 vs. uniprot
Match: A0A6H5KRD0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD0_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 3.040e-42
Identity = 80/116 (68.97%), Postives = 94/116 (81.03%), Query Frame = -3

Query:  177 GPECKDRV-LVAECALYNKERDVYMTGLGKVEGRYKKMFGAWHSEDKTVAVPGHCKRVETAGREIERTARLWHTFLSHLWQSRKERLAIGDRSCGNNRPSSRQGVINDLTAKTWKT 521
            G EC+DRV +VAEC LY KER+VY+T LGK++G Y++MF AW+ E++TVAV GH + VE AGR+I R  RL  TFLSHLWQSRKERLAIGDRSCGNN PSSR  V+N LTAKT KT
Sbjct:  400 GFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVVGHRRWVEKAGRDIARIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKTCKT 515

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BLAST of mRNA_Ecto-sp13_S_contig18890.5970.1 vs. uniprot
Match: A0A6H5LRL5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRL5_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 3.240e-42
Identity = 81/122 (66.39%), Postives = 95/122 (77.87%), Query Frame = -3

Query:  159 GPECKDRV-LVAECALYNKERDVYMTGLGKVEGRYKKMFGAWHSEDKTVAVPGHCKRVETAGREIERTARLWHTFLSHLWQSRKERLAIGDRSCGNNRPSSRQGVINDLTAKTWKT*ENSPP 521
            G EC+DRV +VAEC LY KER+VY+T LGK++G Y++MF AW+ E++TVAV GH + VE AGR+I R  RL  TFLSHLWQSRKERLAIGDRSCGNN PSSR  V+N LTAK  KT    PP
Sbjct:  332 GFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTQRVRPP 453

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BLAST of mRNA_Ecto-sp13_S_contig18890.5970.1 vs. uniprot
Match: A0A6H5KMG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG6_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.830e-41
Identity = 78/116 (67.24%), Postives = 92/116 (79.31%), Query Frame = -3

Query:  177 GPECKDRV-LVAECALYNKERDVYMTGLGKVEGRYKKMFGAWHSEDKTVAVPGHCKRVETAGREIERTARLWHTFLSHLWQSRKERLAIGDRSCGNNRPSSRQGVINDLTAKTWKT 521
            G EC+DRV +VAEC LY KER+VY+T LGK++G Y++MF AW+ E++TVAV GH + VE AGR+I R  RL  TFLSHLWQSRKERLAIGDRSCGNN PSS   V+N LTAK  KT
Sbjct:  246 GFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVVGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSGGCVVNGLTAKACKT 361

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BLAST of mRNA_Ecto-sp13_S_contig18890.5970.1 vs. uniprot
Match: A0A6H5KVX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX2_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 2.380e-41
Identity = 79/116 (68.10%), Postives = 93/116 (80.17%), Query Frame = -3

Query:  177 GPECKDRV-LVAECALYNKERDVYMTGLGKVEGRYKKMFGAWHSEDKTVAVPGHCKRVETAGREIERTARLWHTFLSHLWQSRKERLAIGDRSCGNNRPSSRQGVINDLTAKTWKT 521
            G EC+DRV +VAEC LY KER+VY+T LGK++G Y++MF AW+ E++TVAV GH + VE AGR+I R  RL  TFLSHLWQSRKERLAIGDRSCGNN PSSR  V+N LTAK  KT
Sbjct:  383 GFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 498

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BLAST of mRNA_Ecto-sp13_S_contig18890.5970.1 vs. uniprot
Match: A0A6H5J590_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J590_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 9.040e-41
Identity = 77/116 (66.38%), Postives = 91/116 (78.45%), Query Frame = -3

Query:  177 GPECKDRV-LVAECALYNKERDVYMTGLGKVEGRYKKMFGAWHSEDKTVAVPGHCKRVETAGREIERTARLWHTFLSHLWQSRKERLAIGDRSCGNNRPSSRQGVINDLTAKTWKT 521
            G EC+DRV +VAEC LY KER++YMT LGK++G Y++MF AW+ E++TVAV GH + VE AGR+I R  RL  TFLSHLWQSRKERLAIGDRSCGNN PSSR  V+N  TA   KT
Sbjct:  257 GFECEDRVHVVAECPLYKKERELYMTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGQTAMACKT 372

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BLAST of mRNA_Ecto-sp13_S_contig18890.5970.1 vs. uniprot
Match: A0A6H5JUI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI9_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.140e-40
Identity = 80/116 (68.97%), Postives = 94/116 (81.03%), Query Frame = -3

Query:  177 GPECKDRV-LVAECALYNKERDVYMTGLGKVEGRYKKMFGAWHSEDKTVAVPGHCKRVETAGREIERTARLWHTFLSHLWQSRKERLAIGDRSCGNNRPSSRQGVINDLTAKTWKT 521
            G EC+DRV +VAEC LY KER+VY+T LGK++G Y++MF AW+ E++TVAV GH + VE AGR+I R  RL  TFLSHLWQSRKERLAIGDRSCGNN PSSR  V+N LTAKT KT
Sbjct: 1239 GFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKTCKT 1354

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BLAST of mRNA_Ecto-sp13_S_contig18890.5970.1 vs. uniprot
Match: A0A6H5L5C9_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C9_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.170e-40
Identity = 80/116 (68.97%), Postives = 94/116 (81.03%), Query Frame = -3

Query:  177 GPECKDRV-LVAECALYNKERDVYMTGLGKVEGRYKKMFGAWHSEDKTVAVPGHCKRVETAGREIERTARLWHTFLSHLWQSRKERLAIGDRSCGNNRPSSRQGVINDLTAKTWKT 521
            G EC+DRV +VAEC LY KER+VY+T LGK++G Y++MF AW+ E++TVAV GH + VE AGR+I R  RL  TFLSHLWQSRKERLAIGDRSCGNN PSSR  V+N LTAKT KT
Sbjct: 1468 GFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKTCKT 1583

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BLAST of mRNA_Ecto-sp13_S_contig18890.5970.1 vs. uniprot
Match: A0A6H5JD24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD24_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.710e-40
Identity = 80/118 (67.80%), Postives = 94/118 (79.66%), Query Frame = -3

Query:  171 GPECKDRV-LVAECALYNKERDVYMTGLGKVEGRYKKMFGAWHSEDKTVAVPGHCKRVETAGREIERTARLWHTFLSHLWQSRKERLAIGDRSCGNNRPSSRQGVINDLTAKTWKT*E 521
            G EC+DRV +VAEC LY KER+VY+T LGK++G Y++MF AW+ E++TVAV GH + VE AGR+I R  RL  TFLSHLWQSRKERLAIGDRSCGNN PSSR  V+N LTAK  KT E
Sbjct:  405 GFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTLE 522

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig18890.5970.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig18890.5970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JCQ0_9PHAE	2.640e-44	68.97	Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L729_9PHAE	1.530e-43	65.12	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KRD0_9PHAE	3.040e-42	68.97	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5LRL5_9PHAE	3.240e-42	66.39	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KMG6_9PHAE	1.830e-41	67.24	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KVX2_9PHAE	2.380e-41	68.10	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J590_9PHAE	9.040e-41	66.38	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUI9_9PHAE	1.140e-40	68.97	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L5C9_9PHAE	1.170e-40	68.97	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JD24_9PHAE	1.710e-40	67.80	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig18890	contig	Ecto-sp13_S_contig18890:1428..2265 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	838
Hectar predicted targeting category	other localisation
Exons	1
Cds size	450

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462964.9957845-UTR-Ecto-sp13_S_contig18890:1427..1565	1681462964.9957845-UTR-Ecto-sp13_S_contig18890:1427..1565	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig18890 1428..1565 +
1681462965.0161595-UTR-Ecto-sp13_S_contig18890:2015..2265	1681462965.0161595-UTR-Ecto-sp13_S_contig18890:2015..2265	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig18890 2016..2265 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462965.005939-CDS-Ecto-sp13_S_contig18890:1565..2015	1681462965.005939-CDS-Ecto-sp13_S_contig18890:1565..2015	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig18890 1566..2015 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig18890.5970.1	prot_Ecto-sp13_S_contig18890.5970.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig18890 1566..2015 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig18890:1428..2265+
coding sequence from alignment at Ecto-sp13_S_contig18890:1428..2265+

protein sequence of mRNA_Ecto-sp13_S_contig18890.5970.1

>prot_Ecto-sp13_S_contig18890.5970.1 ID=prot_Ecto-sp13_S_contig18890.5970.1|Name=mRNA_Ecto-sp13_S_contig18890.5970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=150bp
MRRPDKGGGEFSYVFHVFAVRSLITPCREDGRLFPQDRSPMANRSFLLCQ
RWLKKVCHSLAVLSISLPAVSTRLQCPGTATVLSSLCHAPNIFLYLPSTF
PSPVMYTSLSLLYNAHSATKTRSLHSGPDKGGRHKSEKIFLGIAEVFYG*

mRNA from alignment at Ecto-sp13_S_contig18890:1428..2265+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig18890.5970.1 ID=mRNA_Ecto-sp13_S_contig18890.5970.1|Name=mRNA_Ecto-sp13_S_contig18890.5970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=838bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18890:1428..2265+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCCGATTGGTATCACATGTTGTCAACGTCATTTTCCCAATAACAGACG
ATCTTAAAATGAAGGCGCTTGCTCAACCTTATGCTGACGAGGGATAGAGA
GTTGCCAGACTTTGAATGATGGAACAACAGAGTAAAGCATGCGTCGACCG
GATAAGGGGGGAGGAGAGTTCTCTTATGTTTTCCATGTCTTCGCGGTTAG
ATCATTGATAACGCCTTGTCGAGAGGACGGGCGATTGTTCCCGCAGGACC
GATCACCGATGGCCAATCGTTCCTTCCTACTCTGCCAAAGGTGGCTCAAA
AAAGTATGCCATAGTCTAGCTGTTCTTTCGATTTCCCTTCCCGCCGTTTC
TACCCGCTTACAATGCCCCGGTACAGCTACCGTCTTGTCCTCGCTATGCC
ATGCCCCAAACATCTTCTTGTACCTTCCTTCTACCTTTCCCAGCCCAGTC
ATGTACACGTCCCTCTCCTTATTGTACAACGCACATTCCGCAACTAAAAC
ACGGTCTTTGCACTCAGGGCCGGATAAGGGGGGCCGTCACAAATCTGAGA
AAATATTTTTGGGTATAGCCGAGGTATTTTACGGCTAGGCCGCCGAATCT
GCAGCAGTTTAATGCCATGTCGTATCATGGGGTAGAGCAACCGACCTAAC
ACTGCGCAATTCACACCTGCAAAGGCAGGCGAGGAAACCATGTCACGAGG
CATAACGCTTACCTCGTACCTGCGCTTGCCCAAGGGGAACACGTCGCCTT
TATTCAGGTACACGTGGCTGATCGCATCCCATCGCTCAACCAGTCGCAAC
AGCATCTTGCAGAGGCTGACCCAGCGCTGGATAACAGC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18890:1428..2265+

>mRNA_Ecto-sp13_S_contig18890.5970.1 ID=mRNA_Ecto-sp13_S_contig18890.5970.1|Name=mRNA_Ecto-sp13_S_contig18890.5970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18890:1428..2265+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTCGACCGGATAAGGGGGGAGGAGAGTTCTCTTATGTTTTCCATGT
CTTCGCGGTTAGATCATTGATAACGCCTTGTCGAGAGGACGGGCGATTGT
TCCCGCAGGACCGATCACCGATGGCCAATCGTTCCTTCCTACTCTGCCAA
AGGTGGCTCAAAAAAGTATGCCATAGTCTAGCTGTTCTTTCGATTTCCCT
TCCCGCCGTTTCTACCCGCTTACAATGCCCCGGTACAGCTACCGTCTTGT
CCTCGCTATGCCATGCCCCAAACATCTTCTTGTACCTTCCTTCTACCTTT
CCCAGCCCAGTCATGTACACGTCCCTCTCCTTATTGTACAACGCACATTC
CGCAACTAAAACACGGTCTTTGCACTCAGGGCCGGATAAGGGGGGCCGTC
ACAAATCTGAGAAAATATTTTTGGGTATAGCCGAGGTATTTTACGGCTAG