prot_Ecto-sp13_S_contig18889.5966.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18889.5966.1
Unique Nameprot_Ecto-sp13_S_contig18889.5966.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length114
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18889.5966.1 vs. uniprot
Match: D8LAW6_ECTSI (TNFR-Cys domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW6_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 9.230e-72
Identity = 107/114 (93.86%), Postives = 112/114 (98.25%), Query Frame = 0 
Query:    1 MDRGTLAVTFSEAISNAADDVDWTGVSLRTHVNGLEGSGVTLWNTQGEPGWGETDSTDAGLTLAVQIHPTDLDEMKAAFVGHNSSFTWLTLRGDSFVALDDRDGNEPLYGTQVV 114
            MDRGTLA+TFSEA+SNA DDVDWTGVSLRTHVNGLEGSGVTLWNTQGEPGWGETDS DAGLTLAV+IHPTDLDEMKAA+VGHNSSFTWLTLRGDSFVALDDRDGNEP+YGTQVV
Sbjct:    1 MDRGTLAITFSEAMSNATDDVDWTGVSLRTHVNGLEGSGVTLWNTQGEPGWGETDSKDAGLTLAVRIHPTDLDEMKAAYVGHNSSFTWLTLRGDSFVALDDRDGNEPVYGTQVV 114
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18889.5966.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAW6_ECTSI9.230e-7293.86TNFR-Cys domain-containing protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18889contigEcto-sp13_S_contig18889:1607..1948 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18889.5966.1mRNA_Ecto-sp13_S_contig18889.5966.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18889 1577..1948 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18889.5966.1 ID=prot_Ecto-sp13_S_contig18889.5966.1|Name=mRNA_Ecto-sp13_S_contig18889.5966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
MDRGTLAVTFSEAISNAADDVDWTGVSLRTHVNGLEGSGVTLWNTQGEPG
WGETDSTDAGLTLAVQIHPTDLDEMKAAFVGHNSSFTWLTLRGDSFVALD
DRDGNEPLYGTQVV
back to top