mRNA_Ecto-sp13_S_contig18889.5966.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18889.5966.1
Unique NamemRNA_Ecto-sp13_S_contig18889.5966.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18889.5966.1 vs. uniprot
Match: D8LAW6_ECTSI (TNFR-Cys domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW6_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 1.970e-71
Identity = 107/114 (93.86%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:   31 MDRGTLAVTFSEAISNAADDVDWTGVSLRTHVNGLEGSGVTLWNTQGEPGWGETDSTDAGLTLAVQIHPTDLDEMKAAFVGHNSSFTWLTLRGDSFVALDDRDGNEPLYGTQVV 372
            MDRGTLA+TFSEA+SNA DDVDWTGVSLRTHVNGLEGSGVTLWNTQGEPGWGETDS DAGLTLAV+IHPTDLDEMKAA+VGHNSSFTWLTLRGDSFVALDDRDGNEP+YGTQVV
Sbjct:    1 MDRGTLAITFSEAMSNATDDVDWTGVSLRTHVNGLEGSGVTLWNTQGEPGWGETDSKDAGLTLAVRIHPTDLDEMKAAYVGHNSSFTWLTLRGDSFVALDDRDGNEPVYGTQVV 114
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18889.5966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAW6_ECTSI1.970e-7193.86TNFR-Cys domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18889contigEcto-sp13_S_contig18889:1577..1948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score229.6
Seed ortholog evalue7.5e-58
Seed eggNOG ortholog2880.D8LAW6
Model size372
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2CZBK@1,2S9J3@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_006180.1
Cds size342
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462964.7921193-UTR-Ecto-sp13_S_contig18889:1576..16061681462964.7921193-UTR-Ecto-sp13_S_contig18889:1576..1606Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18889 1577..1606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462964.8090873-CDS-Ecto-sp13_S_contig18889:1606..19481681462964.8090873-CDS-Ecto-sp13_S_contig18889:1606..1948Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18889 1607..1948 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18889.5966.1prot_Ecto-sp13_S_contig18889.5966.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18889 1607..1948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18889.5966.1

>prot_Ecto-sp13_S_contig18889.5966.1 ID=prot_Ecto-sp13_S_contig18889.5966.1|Name=mRNA_Ecto-sp13_S_contig18889.5966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
MDRGTLAVTFSEAISNAADDVDWTGVSLRTHVNGLEGSGVTLWNTQGEPG
WGETDSTDAGLTLAVQIHPTDLDEMKAAFVGHNSSFTWLTLRGDSFVALD
DRDGNEPLYGTQVV
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mRNA from alignment at Ecto-sp13_S_contig18889:1577..1948+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18889.5966.1 ID=mRNA_Ecto-sp13_S_contig18889.5966.1|Name=mRNA_Ecto-sp13_S_contig18889.5966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18889:1577..1948+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCCAGAGTTGGAAACATTTTCTCTCGACATGGACAGAGGAACCCTGGC
CGTAACCTTCAGCGAAGCGATCTCCAATGCTGCCGACGATGTAGACTGGA
CCGGGGTGTCACTGAGGACGCACGTCAACGGACTCGAAGGCTCAGGCGTC
ACTCTTTGGAATACCCAAGGAGAGCCAGGCTGGGGCGAGACCGACTCTAC
GGATGCGGGGTTGACGCTAGCAGTGCAGATACACCCGACCGATCTCGACG
AGATGAAGGCGGCGTTTGTGGGCCACAATTCCAGCTTTACTTGGTTGACA
CTGAGGGGAGACTCGTTCGTGGCGCTGGACGATCGGGACGGTAATGAGCC
CTTGTACGGAACGCAGGTGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18889:1577..1948+

>mRNA_Ecto-sp13_S_contig18889.5966.1 ID=mRNA_Ecto-sp13_S_contig18889.5966.1|Name=mRNA_Ecto-sp13_S_contig18889.5966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18889:1577..1948+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACAGAGGAACCCTGGCCGTAACCTTCAGCGAAGCGATCTCCAATGC
TGCCGACGATGTAGACTGGACCGGGGTGTCACTGAGGACGCACGTCAACG
GACTCGAAGGCTCAGGCGTCACTCTTTGGAATACCCAAGGAGAGCCAGGC
TGGGGCGAGACCGACTCTACGGATGCGGGGTTGACGCTAGCAGTGCAGAT
ACACCCGACCGATCTCGACGAGATGAAGGCGGCGTTTGTGGGCCACAATT
CCAGCTTTACTTGGTTGACACTGAGGGGAGACTCGTTCGTGGCGCTGGAC
GATCGGGACGGTAATGAGCCCTTGTACGGAACGCAGGTGGTG
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