mRNA_Ecto-sp13_S_contig18882.5959.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18882.5959.1 vs. uniprot
Match: D7G273_ECTSI (Transmembrane protein 5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G273_ECTSI) HSP 1 Score: 459 bits (1182), Expect = 2.580e-160 Identity = 224/237 (94.51%), Postives = 228/237 (96.20%), Query Frame = 1
Query: 1 QASHLQASCEDPTETTVLIISDETCELPELPPGLPPSCRANVVRIFPFNKPRMDGLPRNAFLPLGPRDTFPFVSEDRRPLASRRSLLFNLQQVRPDTSDRRAELVNIASQYESDNPDLECATNRPHINPKEWQDLVLDSKFTVCPAGRNPGTFRLWEALEGGSIPIVSKLDFMQPALGALSTQTCGDGDVAWNIVAASPFVEAVSVNDWRELPALLDRLRQEPDDYINKLQ---VGW 702
QASHLQASCEDPTETTVL+ISDETCELPELPPGLPPSCRANVVR+FPFNKPR DGLPRNAFLPLGPRDTFPFVSEDRRPLAS RSLLFNLQ VRPDTSDRRAELV+IASQYESDNPDLECATNRPHINPKEWQDLVLDSKFT+CPAGRNPGTFRLWEALEGGSIPIVSKLDF QPALGALSTQTCGDGDVAWNIVAASPFVEAVSVNDW ELPALLDRLRQEPDDYINKLQ V W
Sbjct: 165 QASHLQASCEDPTETTVLVISDETCELPELPPGLPPSCRANVVRVFPFNKPRTDGLPRNAFLPLGPRDTFPFVSEDRRPLASSRSLLFNLQ-VRPDTSDRRAELVDIASQYESDNPDLECATNRPHINPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGGSIPIVSKLDFTQPALGALSTQTCGDGDVAWNIVAASPFVEAVSVNDWHELPALLDRLRQEPDDYINKLQEDCVAW 400
BLAST of mRNA_Ecto-sp13_S_contig18882.5959.1 vs. uniprot
Match: D7G272_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G272_ECTSI) HSP 1 Score: 351 bits (900), Expect = 2.360e-118 Identity = 172/237 (72.57%), Postives = 191/237 (80.59%), Query Frame = 1
Query: 1 QASHLQASCEDPTETTVLIISDETCELPELPPGLPPSCRANVVRIFPFNKPRMDGLPRNAFLPLGPRDTFPFVSEDRRPLASRRSLLFNLQQVRPDTSDRRAELVNIASQYESDNPDLECATNRPHINPKEWQDLVLDSKFTVCPAGRNPGTFRLWEALEGGSIPIVSKLDFMQPALGALSTQTCGDGDVAWNIVAASPFVEAVSVNDWRELPALLDRLRQEPDDYINKLQ---VGW 702
QASHLQASCEDPTETTVLIISDETC LP G+PPSCR+NVVR FPFN+ R + PR +LPLGPRDTFPFVS+DRRPLAS RSL FNLQ VRP+T RR EL+ AS Y+ NP LECATNRP I+ WQ+LVLDSKFT+CPAGRNP TFRLWEALE GSIPIVSKLDF P +G S TCGDGD+AWN VAASPF + VSVN+W ELP LLDRL++EPD+YINKLQ V W
Sbjct: 105 QASHLQASCEDPTETTVLIISDETCRTSGLPVGIPPSCRSNVVRAFPFNQDRANEEPRRPYLPLGPRDTFPFVSDDRRPLASSRSLFFNLQ-VRPETQGRRGELIETASIYQLSNPGLECATNRPSISKTAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAW 340
BLAST of mRNA_Ecto-sp13_S_contig18882.5959.1 vs. uniprot
Match: A0A6H5K309_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K309_9PHAE) HSP 1 Score: 242 bits (617), Expect = 6.450e-75 Identity = 123/234 (52.56%), Postives = 159/234 (67.95%), Query Frame = 1
Query: 1 QASHLQASCEDPTETTVLIISDETCELPELPPGLPPSCRANVVRIFPFNKPRMDGLPRNAFLPLGPRDTFPFVSEDRRPLASRRSLLFNLQQVRPDTSDRRAELVNIASQYESDNPDLEC-ATNRPHINPKEWQDLVLDSKFTVCPAGRNPGTFRLWEALEGGSIPIVSKLDFMQPALGA-LSTQTCGDGDVAWNIVAASPFVEAVSVNDWRELPALLDRLRQEPDDYINKLQV 696
Q SHL+A+CEDPTE T+L+++DETC LP LP +C +NV R +P+N+P + RNA++PLGPRD F FVS R AS R +L N V P+TS RRA L + S Y++ + DLE A+ P +N +W+DL+L S+FTV P G NP TFR +EALE GSIPI+SK D+ PA + + CG GD AWN VAASPF +AVSVN W ELP LLDRL E D ++++LQ
Sbjct: 143 QMSHLKAACEDPTERTLLLVTDETCLNLYLPTKLPGACWSNVARNYPYNRPSAEQEQRNAYIPLGPRDNFAFVSASERSPASTRPVLLNFV-VDPETSSRRAHLAEVVSDYQALHTDLEIYASTTPDLNASQWRDLLLRSRFTVSPGGHNPETFRTFEALEAGSIPIISKSDYTDPAFHKEIRVEACGTGDAAWNTVAASPFAQAVSVNTWDELPELLDRLDAETDSFLDRLQA 375
BLAST of mRNA_Ecto-sp13_S_contig18882.5959.1 vs. uniprot
Match: D7FHD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD8_ECTSI) HSP 1 Score: 160 bits (404), Expect = 7.870e-44 Identity = 76/143 (53.15%), Postives = 99/143 (69.23%), Query Frame = 1
Query: 274 QVRPDTSDRRAELVNIASQYESDNPDLEC-ATNRPHINPKEWQDLVLDSKFTVCPAGRNPGTFRLWEALEGGSIPIVSKLDFMQPALGA-LSTQTCGDGDVAWNIVAASPFVEAVSVNDWRELPALLDRLRQEPDDYINKLQV 696
+V P+TS RRA L + S Y++ + DLE A+ P +N +W+DL+L S+FTV P G NP TFR +EALEGGSIPI+SK D+ PA + + CG GD AWN VAASPF AVSV+ W +LP LLDRL EPD ++++LQ
Sbjct: 167 EVDPETSSRRARLAEVVSDYQALHADLEIYASTAPDLNASQWRDLLLRSRFTVSPGGHNPETFRTFEALEGGSIPIISKSDYTDPAFHKEIRVEACGTGDAAWNTVAASPFARAVSVDTWEDLPELLDRLHAEPDSFLDRLQA 309
BLAST of mRNA_Ecto-sp13_S_contig18882.5959.1 vs. uniprot
Match: A0A2R5GRG6_9STRA (UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRG6_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 3.120e-13 Identity = 56/189 (29.63%), Postives = 95/189 (50.26%), Query Frame = 1
Query: 181 FLPLGPRDTFPFVSEDRRPLASRRSLLFN-------------LQQVRPDTSDRRAELVNIASQYESDNPDLECATNRPHINPKEWQDLVLDSKFTVCPAGRNPGTFRLWEALEGGSIPIVSKLDFMQPALGALSTQTCGDGDVAWNIVAASPFVEAVSVNDWRELPALLDRLRQEPDDYINKLQVGWLE 708
+LPLGPR+ F V + L R FN ++++ P +S++ V + S+++ + +I P E++ +++DS FT+CP G NP +R++EA E GSIPIV ++ + + C +G I +PFV +N W ELPA L+ + Q P+ I ++Q+ +E
Sbjct: 371 YLPLGPREEFKRVYANDVRLVRERKYKFNFMGSLTSLSRKVLVKELGP-SSEKYPSFVWVVSKWKK-----QLTRANGYITPVEYKQILVDSVFTLCPQGHNPEAYRIYEACEAGSIPIVVLDEYYR-------SHEC-EGAFLPLITQGAPFV---FLNSWTELPAYLEYILQHPE-RIQQMQMDTME 541
BLAST of mRNA_Ecto-sp13_S_contig18882.5959.1 vs. uniprot
Match: A0A7S2SIR8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIR8_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 1.010e-9 Identity = 60/202 (29.70%), Postives = 88/202 (43.56%), Query Frame = 1
Query: 181 FLPLGPRDTFPFVSEDRRPLASRRSLLFNLQQVRPDTSDRRAELVNIASQYESDNPDLE----CATNRPHI------NPKEW-------------------QDLVLDSKFTVCPAGRNPGTFRLWEALEGGSIPIVSKLDFMQPALGALSTQTCGDGDVAWNIV--AASPFVEAVSVNDWRELPALLDRLRQEPDDYINKLQ 693
+LPLGPR F V +R LFN+ V +T+ R L + + +P +E ++ P I N K W ++++LDS FT+CP G NP T+RL+EA E GSIPIV + T + GD W + +PF+ V DW + +L LR +P + +LQ
Sbjct: 296 YLPLGPRSEFQAVKAQDVKQPPKRQYLFNMM-VTLETNHNRTRLHWAVMRLKWADPGIEEVKSSSSTLPPITACFIHNAKRWSGSLPSEVSKDKAMPAGHYREVLLDSVFTLCPNGHNPETYRLFEAAEAGSIPIVEE------------TLSSGDCLNPWRPFKDSGAPFIW---VTDWSTIGEVLKELRADPS-RVQRLQ 480
BLAST of mRNA_Ecto-sp13_S_contig18882.5959.1 vs. uniprot
Match: F2UJG8_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UJG8_SALR5) HSP 1 Score: 66.6 bits (161), Expect = 4.360e-9 Identity = 52/162 (32.10%), Postives = 80/162 (49.38%), Query Frame = 1
Query: 244 SRRSLLFNLQQVRPDTSDRRAEL-VNIASQYESD---NPDLECATNRPHINPKEWQDLVLDSKFTVCPAGRNPGTFRLWEALEGGSIPIVSKLDFMQPALGALSTQTCGDGDVAWNIVAASPFVEAVSVNDWRELPALLDRLRQEPDDYINKLQVG---WLE 708
+RR L NLQ + S R L V AS D N + N +E++ ++L+S++T+ PAG N +R +EA GS PIV D +QP +TCG +A +PF+ V DWR+LPA+L+R +++ + + +V W E
Sbjct: 298 TRRKYLCNLQATIYEGSSRETLLQVLRASGLAKDCFINARTQWLPNETPETAEEYKQMLLESEYTLAPAGLNTECYRWYEAAAAGSTPIVE--DVIQP-------KTCGRDPLALLKELEAPFIY---VKDWRDLPAVLEREQRKTPQQLFQQRVALVTWYE 447
BLAST of mRNA_Ecto-sp13_S_contig18882.5959.1 vs. uniprot
Match: A0A7S2SHX6_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHX6_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 5.120e-9 Identity = 61/212 (28.77%), Postives = 97/212 (45.75%), Query Frame = 1
Query: 172 RNAFLPLGPRDTFPFVSEDRRPLASRRSLLFNLQ------QVRPDTSDRRAELVNIASQYESDNPDLECATNRPHIN--------------PKE-----------WQDLVLDSKFTVCPAGRNPGTFRLWEALEGGSIPIVSKLDFMQPALGALSTQTCGDGDVAWNI--VAASPFVEAVSVNDWRELPALLDRLRQEPDDYINKLQVGWLE 708
R +LPL PR F V+++ R + R LFN+ Q+R D D++ + + + N D + P + PKE ++ ++LDS FT+ P+G NP TFRL+EA E GSIPIV ST++ G+ W ++ +PFV V+DW ++ +L+ L +P I ++Q +E
Sbjct: 199 RVRYLPLSPRFEFEMVTDEERKPVTSRKYLFNMMMSLSTNQIRIDL-DKKVKELQVQYPGGGTNADSASGGSLPGLGQSFIHNAMTWQTNLPKEVIDGQAMPADEYRQVLLDSVFTLSPSGHNPETFRLFEAAEAGSIPIVD-----------YSTRS-GNCKNPWRPFKMSQAPFVW---VDDWTDIQHILEDLISDPARVI-QMQKDLME 393
BLAST of mRNA_Ecto-sp13_S_contig18882.5959.1 vs. uniprot
Match: UPI0018901816 (ribitol-5-phosphate xylosyltransferase 1 isoform X1 n=2 Tax=Talpa occidentalis TaxID=50954 RepID=UPI0018901816) HSP 1 Score: 65.9 bits (159), Expect = 7.720e-9 Identity = 45/160 (28.12%), Postives = 79/160 (49.38%), Query Frame = 1
Query: 208 FPFVSEDRRPLASRRSLLFNLQQVRPDTSDRRAELVNIASQYESD-----NPDLECATNRPHINPKEWQDLVLDSKFTVCPAGRNPGTFRLWEALEGGSIPIVSKLDFMQPALGALSTQTCGDGDVAWNI------VAASPFVEAVSVNDWRELPALLDR 654
FP V L + R + N + S R+A L+NI +Y++D +P + + + K +QD +L S T+CPAG N +R++EA GS+P+V A++ +CG+ V+ + +PF+ + +W+ELPA+L++
Sbjct: 255 FPVVEASWAMLYNERPYVCNFLGTVYENSSRQA-LMNILKKYQNDKLCWVSPREQWQPQETNESLKNYQDALLQSDLTLCPAGVNTECYRIYEACSCGSVPVVED---------AMTAGSCGNTSVSHSAPLRLLKAMGAPFI---FIKNWKELPAILEK 401
BLAST of mRNA_Ecto-sp13_S_contig18882.5959.1 vs. uniprot
Match: A0A2R5G5S0_9STRA (UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5S0_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 2.740e-8 Identity = 53/182 (29.12%), Postives = 89/182 (48.90%), Query Frame = 1
Query: 154 RMDGLPRNAFLPLGPRDTFPFVSEDRR-PLASRRSLLFNLQQVRPDTSDRRAELVN-IASQYESDNPDLECA-------------TNRPHINPKEWQDLVLDSKFTVCPAGRNPGTFRLWEALEGGSIPI-VSKLDFMQPALGALSTQTCGDGDVAWNIVAASPFVEAVSVNDWRELPALLD 651
++ G+ + PLGPR F V + P A +R N V TS R +L + S+ + NP + + + +I PK++++++LDSKFT+CP G NP +R++EA E GS+P+ V+K + + + Q D + +PFV ++ W +LP LL+
Sbjct: 291 KLRGIKLPLYFPLGPRAEFERVDQTTGVPAARKRQYAINF--VGSPTSIPRRKLRDYFQSETWTMNPLAKSSYIHVTDTWTQTVSVEKGYITPKQYREVLLDSKFTLCPMGHNPEAYRIYEACEAGSVPVLVTKEEEYVNHKCSNAFQPLLD--------SGAPFV---ILDSWNDLPQLLE 459 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18882.5959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18882.5959.1 >prot_Ecto-sp13_S_contig18882.5959.1 ID=prot_Ecto-sp13_S_contig18882.5959.1|Name=mRNA_Ecto-sp13_S_contig18882.5959.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=238bp QASHLQASCEDPTETTVLIISDETCELPELPPGLPPSCRANVVRIFPFNKback to top mRNA from alignment at Ecto-sp13_S_contig18882:139..2538- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18882.5959.1 ID=mRNA_Ecto-sp13_S_contig18882.5959.1|Name=mRNA_Ecto-sp13_S_contig18882.5959.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2400bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18882:139..2538- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18882:139..2538- >mRNA_Ecto-sp13_S_contig18882.5959.1 ID=mRNA_Ecto-sp13_S_contig18882.5959.1|Name=mRNA_Ecto-sp13_S_contig18882.5959.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18882:139..2538- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |