mRNA_Ecto-sp13_S_contig18881.5958.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18881.5958.1 vs. uniprot
Match: D7FQ22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ22_ECTSI) HSP 1 Score: 624 bits (1608), Expect = 2.080e-225 Identity = 299/312 (95.83%), Postives = 306/312 (98.08%), Query Frame = 1
Query: 1 RRRPLNALCMPKNQRPQGCGPLLPPIGTGGKQVVVVDHVAPELDKIQHVSEYKSDLPCVQTGTCPVPVFRCSKGHVWEPNGKPVCFYCPICADTRITTRMKRKRDLEAMQEIARGKGGECIAEEYLGMDEKIAFRCGDGHDWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVKHEWRCKRGHTFWNTPNNVRRAEGGRRVATFCKICTSMDRRILKAAVLGGLDKDDAKSTLDQLNAVGAMPTRRHFLKKRATGKSTLAAKRRKMIRINNRSGSGSPASTTRNISRSG 936
RRRPLNA CMPKNQRPQGCGPLLPPIGTGGKQVVVVDHVAPELDKI+H+SEYKSDLPCVQTGTCPVPVFRCSKGHVWEPNG PVCFYCPICADTRITTRMKRKRDLEAMQEIARGKGGECIAEEYLG+DEKIAFRCGDGH+WLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVKHEWRCKRGHTFWNTPNNVRRAEGGRRVATFCKICTSMDRRILKAAVLGGLDKDDAKSTLDQLNAVGAMP RRHFLKKRATGKSTLAA+RRKMIR+NNRS SGSPA+TT NIS SG
Sbjct: 17 RRRPLNASCMPKNQRPQGCGPLLPPIGTGGKQVVVVDHVAPELDKIRHLSEYKSDLPCVQTGTCPVPVFRCSKGHVWEPNGTPVCFYCPICADTRITTRMKRKRDLEAMQEIARGKGGECIAEEYLGIDEKIAFRCGDGHEWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVKHEWRCKRGHTFWNTPNNVRRAEGGRRVATFCKICTSMDRRILKAAVLGGLDKDDAKSTLDQLNAVGAMPIRRHFLKKRATGKSTLAAQRRKMIRMNNRSSSGSPANTTSNISSSG 328
BLAST of mRNA_Ecto-sp13_S_contig18881.5958.1 vs. uniprot
Match: A0A6H5JCH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH6_9PHAE) HSP 1 Score: 626 bits (1614), Expect = 1.630e-223 Identity = 301/312 (96.47%), Postives = 307/312 (98.40%), Query Frame = 1
Query: 1 RRRPLNALCMPKNQRPQGCGPLLPPIGTGGKQVVVVDHVAPELDKIQHVSEYKSDLPCVQTGTCPVPVFRCSKGHVWEPNGKPVCFYCPICADTRITTRMKRKRDLEAMQEIARGKGGECIAEEYLGMDEKIAFRCGDGHDWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVKHEWRCKRGHTFWNTPNNVRRAEGGRRVATFCKICTSMDRRILKAAVLGGLDKDDAKSTLDQLNAVGAMPTRRHFLKKRATGKSTLAAKRRKMIRINNRSGSGSPASTTRNISRSG 936
RRRPLNA CMPKNQRPQGCGPLLPPIGTGGKQVVVVDHVAPELDKI+H+SEYKSDLPCVQTGTCPVPVFRCSKGHVWEPNG PVCFYCPICADTRITTRMKRKRDLEAMQEIARGKGGECIAEEYLGMDEKIAFRCGDGH+WLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVKHEWRCKRGHTFWNTPNNVRRAEGGRRVATFCKICTSMDRRILKAAVLGGLDKDDAKSTLDQLNAVGAMPTRRHFLKKRATGKSTLAA+RRKMIR+NNRS SGSPA+TT NIS SG
Sbjct: 194 RRRPLNASCMPKNQRPQGCGPLLPPIGTGGKQVVVVDHVAPELDKIRHLSEYKSDLPCVQTGTCPVPVFRCSKGHVWEPNGTPVCFYCPICADTRITTRMKRKRDLEAMQEIARGKGGECIAEEYLGMDEKIAFRCGDGHEWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVKHEWRCKRGHTFWNTPNNVRRAEGGRRVATFCKICTSMDRRILKAAVLGGLDKDDAKSTLDQLNAVGAMPTRRHFLKKRATGKSTLAAQRRKMIRMNNRSLSGSPANTTTNISSSG 505
BLAST of mRNA_Ecto-sp13_S_contig18881.5958.1 vs. uniprot
Match: A0A836C7R5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R5_9STRA) HSP 1 Score: 200 bits (508), Expect = 1.270e-58 Identity = 100/239 (41.84%), Postives = 129/239 (53.97%), Query Frame = 1
Query: 16 NALCMPKNQRPQGCGPLL----PPIGTGGKQVVVVDHVAPELDKIQHVSEYKSDLPCVQTGTCPVPVFRCSKGHVWEP-NGKPVCFYCPICADTRITTRMKRKR-DLEAMQEIARGKGGECIAEEYLGMDEKIAFRCGDGHDWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVKHEWRCKRGHTFWNTPNNVRRAEGGRRVATFCKICTSMDRRI 714
+ALC P RP GC PLL PP T ++ + LPCV++G CP F C +GH W+ G P CF+CP C+ + R R+R L ++ E+A +GGEC++ EY G+ E F+C GH W +N+VY +WCP CA + +L+ ADMH TA QFGG FLSP Y GA KH WRC GHTF TPN +RR GG+R FC C+ R I
Sbjct: 71 SALCRPTGTRPLGCAPLLQHHFPPPRTCTDDAMM------------------TPLPCVESGVCPFVRFECPRGHTWKAVAGAPACFFCPQCSAAEVRGRRARRRLSLASLAELAAARGGECVSAEYRGLMEPHDFKCAKGHVWSALANNVVYCASWCPTCAKGQRAASNRLSAADMHATAAQFGGEFLSPTYHGADKKHLWRCSAGHTFKQTPNAIRRRVGGKRRPAFCPECSRAQRAI 291
BLAST of mRNA_Ecto-sp13_S_contig18881.5958.1 vs. uniprot
Match: UPI0007856E0F (hypothetical protein n=1 Tax=Polynucleobacter sinensis TaxID=1743157 RepID=UPI0007856E0F) HSP 1 Score: 126 bits (316), Expect = 1.170e-31 Identity = 57/149 (38.26%), Postives = 90/149 (60.40%), Query Frame = 1
Query: 205 FRCSKGHVWE--PNGKPVCFYCPICADTRITTRMKRKRDLEAMQEIARGKGGECIAEEYLGMDEKIAFRCGDGHDWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVKHEWRCKRGHTFWNTPNNV 645
+ CS+ H W PN +CPICA++ K+ +E Q IA+ +GG C+++EYLG+ +K+ +RCG+GH+W ++P + N WCPKC ++ + + ++ DM A + GGV LS EY A K +WRCK GH + +TP+ +
Sbjct: 26 WTCSERHEWSALPNTIKKGHWCPICANSGTAA----KKSIEEFQAIAKERGGVCLSDEYLGIFKKLKWRCGEGHEWESTPKTIQAGN-WCPKCGRIKVGNQLRKSIDDMQVLAYRNGGVCLSNEYLNACTKLKWRCKEGHVWESTPDTI 169
BLAST of mRNA_Ecto-sp13_S_contig18881.5958.1 vs. uniprot
Match: A0A1T1HII4_9PSED (Uncharacterized protein n=2 Tax=Pseudomonas sp. MF4836 TaxID=1960827 RepID=A0A1T1HII4_9PSED) HSP 1 Score: 115 bits (287), Expect = 8.480e-26 Identity = 60/170 (35.29%), Postives = 88/170 (51.76%), Query Frame = 1
Query: 205 FRCSKGHVWEPNGKPVC--FYCPICADTRITTRMKRKRDLEAMQEIARGKGGECIAEEYLGMDEKIAFRCGDGHDWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVKHEWRCKRGHTFWNTPNNVRRAEGGRRVATFCKICTSMDR 708
FRC++GH WE G V +CP CA R + + LE +++ A +GG+C+AE YLG+ + FRC GH+W T ++ + WC CA ++K+L++ D H +A+ GG LS Y K W C RGH++ N+R +C C SMDR
Sbjct: 181 FRCARGHEWEAQGHEVKRRTWCPECARLRKVEGYRHQDGLERLRQKAAERGGQCLAEAYLGVGSRYRFRCAKGHEWETLGRRML-RGGWCLICA----YDKKRLSIEDAHASAKARGGQCLSTSYIRVIDKLHWLCHRGHSWHAQYANIRAGH-------WCPECASMDR 338
BLAST of mRNA_Ecto-sp13_S_contig18881.5958.1 vs. uniprot
Match: A0A4Y8N5J5_9BURK (Uncharacterized protein n=1 Tax=Paraburkholderia dipogonis TaxID=1211383 RepID=A0A4Y8N5J5_9BURK) HSP 1 Score: 113 bits (283), Expect = 1.770e-25 Identity = 51/151 (33.77%), Postives = 81/151 (53.64%), Query Frame = 1
Query: 202 VFRCSKGHVWE--PNGKPVCFYCPICADTRITTRMKRKRDLEAMQEIARGKGGECIAEEYLGMDEKIAFRCGDGHDWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVKHEWRCKRGHTFWNTPNNVR 648
+++C +GH WE P+ +C +C R + + L MQ +A+ +GG+C++ Y EK+ + C GH W +P + +WCP C SVE+++LT+ADMH AR+ GG LS Y + WRC +GH + P ++R
Sbjct: 42 LWQCDQGHTWESTPSNVKAGSWCQVCGKAR-----REAQWLAEMQALAQARGGKCLSIRYTRFQEKLRWECDQGHQWDATPGGIKTSGSWCPVC----SVEKQRLTIADMHVAAREHGGECLSASYFDNLTRLRWRCAQGHEWDAKPMHIR 183
BLAST of mRNA_Ecto-sp13_S_contig18881.5958.1 vs. uniprot
Match: UPI00177ABD0A (hypothetical protein n=1 Tax=Pseudomonas sp. PDM20 TaxID=2769254 RepID=UPI00177ABD0A) HSP 1 Score: 103 bits (256), Expect = 2.670e-21 Identity = 54/149 (36.24%), Postives = 79/149 (53.02%), Query Frame = 1
Query: 205 FRCSKGHVWEPNGKPV-----CFYCPICADTRITTRMKRKRDLEAMQEIARGKGGECIAEEYLGMDEKIAFRCGDGHDWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVKHEWRCKRGHTFWNTP 636
+RCS+GH+WE + C C + + DL +Q+ A GG+C++E +LG+ K + C GH W + V K WC +CA + + LTL DM + A + GG L+ EY+GA VK++W C RGHT W+TP
Sbjct: 228 WRCSRGHIWEGQYARIRRGSWCLQC---------VKEDKAADLGPLQQAAALHGGKCLSEVFLGVSAKHRWECAKGHVW-EALFYTVRKGNWCAQCAK----DARWLTLEDMQEAAARHGGQCLAEEYRGAHVKYQWLCARGHT-WSTP 361
BLAST of mRNA_Ecto-sp13_S_contig18881.5958.1 vs. uniprot
Match: UPI001917F276 (hypothetical protein n=1 Tax=Paraburkholderia sabiae TaxID=273251 RepID=UPI001917F276) HSP 1 Score: 98.6 bits (244), Expect = 3.520e-20 Identity = 55/178 (30.90%), Postives = 89/178 (50.00%), Query Frame = 1
Query: 208 RCSKGHVWE------PNGKPVCFYCPICADTRITTRMKRKRDLEAMQEIARGKGGECIAEEYLGMDEKIAFRCGDGHDWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVKHEWRCKRGHTFWNTPNNVRRAEGGRRVATFCKICTSMDRRILKA 723
+C++GH+W NG +CP C+ + R+ ++AMQ +AR +GG C++E Y+ K+ ++C +GH+W SP ++ N WC C LR +E + L M A + GG LS Y + K W+C+ GH + TP VR A +C +C +++ A
Sbjct: 30 QCARGHIWRFGSAKLKNG----LWCPQCSHEQ------RRSGIDAMQALARRRGGRCVSETYVSSHGKLRWQCRNGHEWTMSPISVQAGN-WCAVC--LR-IEHDRTWLPLMQALALRRGGKCLSDTYVNSRTKLRWQCRHGHIWEATPAGVREA------GAWCPVCARARQKLTLA 187
BLAST of mRNA_Ecto-sp13_S_contig18881.5958.1 vs. uniprot
Match: A0A1Q9EBE5_SYMMI (Uncharacterized protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EBE5_SYMMI) HSP 1 Score: 99.8 bits (247), Expect = 1.200e-19 Identity = 49/151 (32.45%), Postives = 79/151 (52.32%), Query Frame = 1
Query: 205 FRCSKGHVWEPNGKPVCF---YCPICADTRITTRMKRKRDLEAMQEIARGKGGECIAEE-YLGMDEKIAFRCGDGHDWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVKHEWRCKRGHTFWNTPNNV 645
++C GH W+ V + +CP CA R +KR +Q+ AR +GG C++E Y +K+ + C GH W +PS ++ K +WCPKC+ + K+ +L D+ + A GG L+ Y G V W+C+ GH + + NN+
Sbjct: 116 WQCQHGHTWDARPHNVLYQKSWCPECARNRQRIPLKR------LQDHARVRGGRCLSESTYNRSGDKVMWECKLGHTWKATPSMVLSKGSWCPKCSR-KGRTYKRRSLKDLQEHAASLGGGCLTTTYAGVMVPVLWQCREGHIWSASANNI 259
BLAST of mRNA_Ecto-sp13_S_contig18881.5958.1 vs. uniprot
Match: UPI00149256AD (hypothetical protein n=1 Tax=Paenibacillus foliorum TaxID=2654974 RepID=UPI00149256AD) HSP 1 Score: 98.2 bits (243), Expect = 3.130e-19 Identity = 50/133 (37.59%), Postives = 77/133 (57.89%), Query Frame = 1
Query: 310 RDLEAMQEIARGKGGECIAEEYLGMDEKIAFRCGDGHDWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVKHEWRCKRGHTFWNTPNNVRRAEGGRRVATFCKICTSMDR 708
+ L ++E+AR GGEC+A Y+ + +RC GH+W P+++ + WC KCA + LT+ADMH+TARQ G+ LS EY + W+C++GHT+ T ++VR GR +CK C++ R
Sbjct: 311 KPLNKLRELARKHGGECLATSYINNKTPVPWRCKFGHEWNAKPNDIT-SSQWCGKCAG-----NQPLTIADMHETARQRNGLCLSNEYINSQTHLLWQCEQGHTWKATASDVR---SGR----WCKKCSTKRR 430 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18881.5958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18881.5958.1 >prot_Ecto-sp13_S_contig18881.5958.1 ID=prot_Ecto-sp13_S_contig18881.5958.1|Name=mRNA_Ecto-sp13_S_contig18881.5958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=304bp MPKNQRPQGCGPLLPPIGTGGKQVVVVDHVAPELDKIQHVSEYKSDLPCVback to top mRNA from alignment at Ecto-sp13_S_contig18881:176..2996- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18881.5958.1 ID=mRNA_Ecto-sp13_S_contig18881.5958.1|Name=mRNA_Ecto-sp13_S_contig18881.5958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2821bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18881:176..2996- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18881:176..2996- >mRNA_Ecto-sp13_S_contig18881.5958.1 ID=mRNA_Ecto-sp13_S_contig18881.5958.1|Name=mRNA_Ecto-sp13_S_contig18881.5958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18881:176..2996- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |