mRNA_Ecto-sp13_S_contig18879.5956.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18879.5956.1
Unique NamemRNA_Ecto-sp13_S_contig18879.5956.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18879.5956.1 vs. uniprot
Match: D8LPS2_ECTSI (Bleomycin hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPS2_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 9.220e-32
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 SWGDTRGNKGYFLMTDAWFDEYLFQVVVHKSLLDKDLLPLLTDEPTMLPAWDPMGSLA 174
            SWGDTRGNKGYFLMT+AWFDEYLFQVVV+KSLLDKDLLPLLTDEPTMLPAWDPMGSLA
Sbjct:  403 SWGDTRGNKGYFLMTNAWFDEYLFQVVVNKSLLDKDLLPLLTDEPTMLPAWDPMGSLA 460
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BLAST of mRNA_Ecto-sp13_S_contig18879.5956.1 vs. uniprot
Match: UPI00189AC8E3 (bleomycin hydrolase n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI00189AC8E3)

HSP 1 Score: 87.0 bits (214), Expect = 8.760e-21
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 SWGDTRGNKGYFLMTDAWFDEYLFQVVVHKSLLDKDLLPLLTDEPTMLPAWDPMGSLA 174
            SWGD RGNKGY +MTD WF EY+++VVV K  L  D+L ++  +P +LPAWDPMGSLA
Sbjct:   56 SWGDDRGNKGYLIMTDDWFSEYVYEVVVDKKFLSSDVLDVMQRDPIVLPAWDPMGSLA 113
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BLAST of mRNA_Ecto-sp13_S_contig18879.5956.1 vs. uniprot
Match: A0A356B0J2_9FIRM (Aminopeptidase (Fragment) n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A356B0J2_9FIRM)

HSP 1 Score: 87.0 bits (214), Expect = 7.210e-20
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 SWGDTRGNKGYFLMTDAWFDEYLFQVVVHKSLLDKDLLPLLTDEPTMLPAWDPMGSLA 174
            SWG+ RG+KG+ +M+D WFDEY++QVVVHK  LDK +L L+  EP +L  WDPMGSLA
Sbjct:  144 SWGEDRGHKGFLVMSDKWFDEYMYQVVVHKKYLDKKILDLVKQEPIVLKPWDPMGSLA 201
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BLAST of mRNA_Ecto-sp13_S_contig18879.5956.1 vs. uniprot
Match: A0A5C6PGI2_9TELE (Bleomycin hydrolase n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6PGI2_9TELE)

HSP 1 Score: 89.7 bits (221), Expect = 1.560e-19
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 SWGDTRGNKGYFLMTDAWFDEYLFQVVVHKSLLDKDLLPLLTDEPTMLPAWDPMGSLA 174
            SWGD RGNKGY +MTD WF E++++VVV K  L  D+L ++  EPT+LPAWDPMGSLA
Sbjct: 1827 SWGDDRGNKGYLIMTDDWFSEFVYEVVVDKKFLSSDVLDVMQQEPTVLPAWDPMGSLA 1884
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BLAST of mRNA_Ecto-sp13_S_contig18879.5956.1 vs. uniprot
Match: A0A674MGN6_TAKRU (Bleomycin hydrolase n=11 Tax=Tetraodontidae TaxID=31031 RepID=A0A674MGN6_TAKRU)

HSP 1 Score: 89.4 bits (220), Expect = 1.730e-19
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 SWGDTRGNKGYFLMTDAWFDEYLFQVVVHKSLLDKDLLPLLTDEPTMLPAWDPMGSLA 174
            SWGD RGNKGY +MTD WF E++++VVV K  L  D+L ++  EPT+LPAWDPMGSLA
Sbjct:  397 SWGDDRGNKGYLIMTDDWFSEFVYEVVVDKKFLSPDVLDVMQQEPTVLPAWDPMGSLA 454
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BLAST of mRNA_Ecto-sp13_S_contig18879.5956.1 vs. uniprot
Match: H2MFY8_ORYLA (Bleomycin hydrolase n=97 Tax=Clupeocephala TaxID=186625 RepID=H2MFY8_ORYLA)

HSP 1 Score: 88.2 bits (217), Expect = 4.440e-19
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 SWGDTRGNKGYFLMTDAWFDEYLFQVVVHKSLLDKDLLPLLTDEPTMLPAWDPMGSLA 174
            SWGD RGNKGY +MTD WF EY+++VVV K  L  D+L ++  EP +LPAWDPMGSLA
Sbjct:  395 SWGDDRGNKGYLIMTDDWFSEYVYEVVVDKKFLPPDVLEVMQQEPIILPAWDPMGSLA 452
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BLAST of mRNA_Ecto-sp13_S_contig18879.5956.1 vs. uniprot
Match: A0A7N6BHC6_ANATE (Bleomycin hydrolase n=7 Tax=Teleostei TaxID=32443 RepID=A0A7N6BHC6_ANATE)

HSP 1 Score: 87.8 bits (216), Expect = 6.630e-19
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 SWGDTRGNKGYFLMTDAWFDEYLFQVVVHKSLLDKDLLPLLTDEPTMLPAWDPMGSLA 174
            SWGD RGNKGY +MTD WF EY+++VVV K  L  D+L ++  EP +LPAWDPMGSLA
Sbjct:  427 SWGDDRGNKGYLIMTDDWFSEYVYEVVVDKKFLPVDVLDVMQQEPIILPAWDPMGSLA 484
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BLAST of mRNA_Ecto-sp13_S_contig18879.5956.1 vs. uniprot
Match: A0A6I9PUS8_9TELE (bleomycin hydrolase n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9PUS8_9TELE)

HSP 1 Score: 86.3 bits (212), Expect = 7.840e-19
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 SWGDTRGNKGYFLMTDAWFDEYLFQVVVHKSLLDKDLLPLLTDEPTMLPAWDPMGSLA 174
            SWGD RGNKGY +MTD WF EY+++VVV K  L  ++L ++  EP +LPAWDPMG+LA
Sbjct:  250 SWGDDRGNKGYLIMTDEWFSEYVYEVVVDKKYLSTEVLDVMQQEPVVLPAWDPMGALA 307
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18879.5956.1 vs. uniprot
Match: A0A2N7XTT0_9PSED (Aminopeptidase (Fragment) n=1 Tax=Pseudomonas sp. GP01-A4 TaxID=2070571 RepID=A0A2N7XTT0_9PSED)

HSP 1 Score: 80.9 bits (198), Expect = 8.120e-19
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 SWGDTRGNKGYFLMTDAWFDEYLFQVVVHKSLLDKDLLPLLTDEPTMLPAWDPMGSLA 174
            SWGD  G KG++ MTDAWFDE+ ++VVVH+  L +D+L LL  EP  L  WDPMGSLA
Sbjct:   20 SWGDKGGEKGFYEMTDAWFDEFNYEVVVHRKYLPEDILALLNREPVGLEPWDPMGSLA 77
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18879.5956.1 vs. uniprot
Match: A0A1A7XEQ4_9TELE (Bleomycin hydrolase n=1 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7XEQ4_9TELE)

HSP 1 Score: 85.9 bits (211), Expect = 9.780e-19
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 SWGDTRGNKGYFLMTDAWFDEYLFQVVVHKSLLDKDLLPLLTDEPTMLPAWDPMGSLA 174
            SWGD RGNKGY +MTD WF EY+++VVV K  L  ++L ++  EP +LPAWDPMG+LA
Sbjct:  241 SWGDDRGNKGYLIMTDDWFSEYVYEVVVDKKFLPSEVLDVMQQEPIVLPAWDPMGALA 298
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18879.5956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPS2_ECTSI9.220e-3296.55Bleomycin hydrolase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
UPI00189AC8E38.760e-2162.07bleomycin hydrolase n=1 Tax=Nematolebias whitei Ta... [more]
A0A356B0J2_9FIRM7.210e-2062.07Aminopeptidase (Fragment) n=1 Tax=Clostridiales ba... [more]
A0A5C6PGI2_9TELE1.560e-1963.79Bleomycin hydrolase n=1 Tax=Takifugu flavidus TaxI... [more]
A0A674MGN6_TAKRU1.730e-1963.79Bleomycin hydrolase n=11 Tax=Tetraodontidae TaxID=... [more]
H2MFY8_ORYLA4.440e-1963.79Bleomycin hydrolase n=97 Tax=Clupeocephala TaxID=1... [more]
A0A7N6BHC6_ANATE6.630e-1963.79Bleomycin hydrolase n=7 Tax=Teleostei TaxID=32443 ... [more]
A0A6I9PUS8_9TELE7.840e-1960.34bleomycin hydrolase n=1 Tax=Notothenia coriiceps T... [more]
A0A2N7XTT0_9PSED8.120e-1960.34Aminopeptidase (Fragment) n=1 Tax=Pseudomonas sp. ... [more]
A0A1A7XEQ4_9TELE9.780e-1960.34Bleomycin hydrolase n=1 Tax=Iconisemion striatum T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18879contigEcto-sp13_S_contig18879:44..667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score123.2
Seed ortholog evalue3.9e-26
Seed eggNOG ortholog2880.D8LPS2
Preferred nameBLMH
Model size174
KEGG koko:K01372
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000096,GO:0000098,GO:0000122,GO:0000209,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003723,GO:0003729,GO:0003824,GO:0004175,GO:0004177,GO:0004180,GO:0004197,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006082,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006520,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008238,GO:0009056,GO:0009063,GO:0009636,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016054,GO:0016567,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032446,GO:0036211,GO:0042221,GO:0042493,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043418,GO:0043436,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044273,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046395,GO:0046677,GO:0048519,GO:0048523,GO:0050667,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0070011,GO:0070647,GO:0071704,GO:0080090,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141
Exons2
EggNOG free text desc.homocysteine catabolic process
EggNOG OGsCOG3579@1,KOG4128@2759
EC3.4.22.40
Cds size174
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462963.9554224-CDS-Ecto-sp13_S_contig18879:43..1421681462963.9554224-CDS-Ecto-sp13_S_contig18879:43..142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18879 44..142 -
1681462963.9685168-CDS-Ecto-sp13_S_contig18879:592..6671681462963.9685168-CDS-Ecto-sp13_S_contig18879:592..667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18879 593..667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18879.5956.1prot_Ecto-sp13_S_contig18879.5956.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18879 44..667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18879.5956.1

>prot_Ecto-sp13_S_contig18879.5956.1 ID=prot_Ecto-sp13_S_contig18879.5956.1|Name=mRNA_Ecto-sp13_S_contig18879.5956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
SWGDTRGNKGYFLMTDAWFDEYLFQVVVHKSLLDKDLLPLLTDEPTMLPA
WDPMGSLA
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mRNA from alignment at Ecto-sp13_S_contig18879:44..667-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18879.5956.1 ID=mRNA_Ecto-sp13_S_contig18879.5956.1|Name=mRNA_Ecto-sp13_S_contig18879.5956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18879:44..667- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTGGGGTGACACGAGGGGTAACAAGGGCTACTTCCTCATGACGGACGC
GTGGTTCGACGAGTATCTTTTCCAGGTGAACGAACGAACGGAATGCATGA
TCCGCAACGAAACCCTTATTACGCTTTACTTTCCGCCCGGGCGGCATTGT
ACTACTACGTGTTAGACTGCAGGAGAAGAAAGGACATGTACGACGTGTTC
GACGTGCACGAGGAGAGACCACGCTACCGACTCCCCCGTATATCTCACCC
AATCACACAACACATGATAATTTCTTCGCCGAGAAATATTTCCTGGAAAG
TCTGGATCGCAGCAGGTGCATAGAAGCATTTTGTTCTGAAAATACCCCCA
TCAGTCTACCAGACGGTAGCGTGCCAAATCAAGCGCTGAACCAACTGCAC
CGTTGCTCCCTCATTTGTTGATTTGCTTTAACTAAACTGCGCCAATGCCG
CTGTCGGATTACGCCCGCGCGCTGCACGGGGCGTTGTCGGACAATGACTC
GTAACTGCAACGGTGGAAATGGCAGGTGGTGGTGCACAAGAGTCTTTTGG
ATAAAGACCTGCTGCCACTGCTTACAGACGAGCCCACCATGCTGCCCGCG
TGGGATCCGATGGGCAGCCTCGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18879:44..667-

>mRNA_Ecto-sp13_S_contig18879.5956.1 ID=mRNA_Ecto-sp13_S_contig18879.5956.1|Name=mRNA_Ecto-sp13_S_contig18879.5956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18879:44..667- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTGGGGTGACACGAGGGGTAACAAGGGCTACTTCCTCATGACGGACGC
GTGGTTCGACGAGTATCTTTTCCAGGTGGTGGTGCACAAGAGTCTTTTGG
ATAAAGACCTGCTGCCACTGCTTACAGACGAGCCCACCATGCTGCCCGCG
TGGGATCCGATGGGCAGCCTCGCG
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