mRNA_Ecto-sp13_S_contig18878.5955.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18878.5955.1
Unique NamemRNA_Ecto-sp13_S_contig18878.5955.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18878.5955.1 vs. uniprot
Match: A0A6H5K5Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Q8_9PHAE)

HSP 1 Score: 677 bits (1746), Expect = 8.600e-233
Identity = 396/461 (85.90%), Postives = 406/461 (88.07%), Query Frame = 1 
Query:    1 ASPFLFLLDGGTVELVSPVFEAAGQAFVAQVDPPAFPSDKGNEISHLRIVGSGGFQAAGTRPAFTGFHQNDGVNGHRTRTTAPGAKLSVVSVGGRVSLVDTAGNDDRGAGNRDGEGLTKPAAAAA-----------VDTTPFALRDLAMLGAELFLEGGSSGDERQQHRGLAVENSARFRTANVSAVASGAAAGSGHDEAAADRRRWARGSPADAAVAGVTLEAQGAAKLGEAWEPKPFFLGTSLSQRFPLPESPKPAGAGAGAVEGGGRHAARSGGVERDVGDRVSLDGVVVKLAGESEVQGGVFLAGTAMVQQVAPSGSLTLTGDATIRRQAXXXXXXXXXXXXXXXXXXAVRNAGVLSLPRGFSLAVAGGVEQGPTGETAIVLPAPLYAPSPATGGCPEGSGEEPSGVESGGGPDTWFVEGQGWGGATGHPLVVESGATRLAGAVNASVSRGGGEDER 1350
            ASPFLF+LDGGTVELVSPVFEAAGQAFVAQVDPPAFPSD  +EISHLRIVGSGG Q  G   AFTGF QNDG NG RTRTTAPGAKLSVVSVGGRVSLVDT G+DDRGAG  DGEGLTKP                VDTTPFALRDLA+LGAELFLEGG+ G ERQQHRGLAVENSARFRTANVSAV SGAAAGSGHDEAAA RRRWARGSPADAAVAGVTLEAQGAAKLGEAWEPKPFFLGTSLSQRFPLPES + AGAGA AVEGGGRHAARSGG ERD  DRVS DGVVVKLAGESEV+GGV LA TAMVQ VAPSGSLTLTGD TIRRQ XXXXXXXXXXXXXXXXXXAVRNAGVLSLPRGFSL +AGGVEQGPTGETAIVLPAPLYAPSPA GGCPEGSGEE  G ES GGP  W +EG+GWGGATGHPLVVESGATRLAGAVNASVSRGGGEDER
Sbjct:  432 ASPFLFVLDGGTVELVSPVFEAAGQAFVAQVDPPAFPSDMESEISHLRIVGSGGPQTTGAHAAFTGFLQNDGANGRRTRTTAPGAKLSVVSVGGRVSLVDTTGDDDRGAGTNDGEGLTKPPXXXXXXXXXXXXXXXVDTTPFALRDLALLGAELFLEGGNGG-ERQQHRGLAVENSARFRTANVSAVVSGAAAGSGHDEAAAGRRRWARGSPADAAVAGVTLEAQGAAKLGEAWEPKPFFLGTSLSQRFPLPESAELAGAGAEAVEGGGRHAARSGGGERDADDRVSFDGVVVKLAGESEVRGGVSLAETAMVQ-VAPSGSLTLTGDTTIRRQXXXXXXXXXXXXXXXXXXXAVRNAGVLSLPRGFSLTIAGGVEQGPTGETAIVLPAPLYAPSPAAGGCPEGSGEENFGGESAGGPGIWCMEGEGWGGATGHPLVVESGATRLAGAVNASVSRGGGEDER 890
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BLAST of mRNA_Ecto-sp13_S_contig18878.5955.1 vs. uniprot
Match: D7FTH4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH4_ECTSI)

HSP 1 Score: 688 bits (1775), Expect = 2.340e-226
Identity = 402/450 (89.33%), Postives = 410/450 (91.11%), Query Frame = 1 
Query:    1 ASPFLFLLDGGTVELVSPVFEAAGQAFVAQVDPPAFPSDKGNEISHLRIVGSGGFQAAGTRPAFTGFHQNDGVNGHRTRTTAPGAKLSVVSVGGRVSLVDTAGNDDRGAGNRDGEGLTKPAAAAAVDTTPFALRDLAMLGAELFLEGGSSGDERQQHRGLAVENSARFRTANVSAVASGAAAGSGHDEAAADRRRWARGSPADAAVAGVTLEAQGAAKLGEAWEPKPFFLGTSLSQRFPLPESPKPAGAGAGAVEGGGRHAARSGGVERDVGDRVSLDGVVVKLAGESEVQGGVFLAGTAMVQQVAPSGSLTLTGDATIRRQAXXXXXXXXXXXXXXXXXX-AVRNAGVLSLPRGFSLAVAGGVEQGPTGETAIVLPAPLYAPSPATGGCPEGSGEEPSGVESGGGPDTWFVEGQGWGGATGHPLVVESGATRLAGAVNASVSRGGGEDE 1347
            ASPFLF+LDGGTVELVSPVFEA GQAFVAQVDPPAFPSD+ +EISHLRIVGSGG QA G  PAFTGFHQNDG NG R RTTA GAKLSVVSVGGRVSLVDT G+DDR AG  DGE LTKPA AA VDTTP ALRDLA+LGAELFLEGGS GDERQQHRGLAVENSARFRTANVSAVASGAA  SGHDEAAADRRRWARGSPADAAVAGVTLEAQGAAKLGEAWEPKPFFLGTSLSQRFP PES + AG GAGAVEGGGRHAARSGG  RD  DRVS DGVVVKLAGESEVQGGV LA TA+VQ VAPSGSLTLTGDATIRRQ XXXXXXXXXXXXXXXXXX AVRNAG LSLPRGFSLAVAGGVEQGPTGETAIVLPAPLYAPSPA GGCPEGSGE+P GVESGGGP TWFVEGQGWG ATGHPLVVESGATRLAGAVNASVSRGGGEDE
Sbjct:  951 ASPFLFVLDGGTVELVSPVFEAPGQAFVAQVDPPAFPSDRESEISHLRIVGSGGPQATGAHPAFTGFHQNDGANGRRPRTTASGAKLSVVSVGGRVSLVDTTGDDDRRAGINDGERLTKPAVAA-VDTTPSALRDLALLGAELFLEGGSDGDERQQHRGLAVENSARFRTANVSAVASGAAR-SGHDEAAADRRRWARGSPADAAVAGVTLEAQGAAKLGEAWEPKPFFLGTSLSQRFPSPESAELAGEGAGAVEGGGRHAARSGGGGRDADDRVSFDGVVVKLAGESEVQGGVSLAETAVVQ-VAPSGSLTLTGDATIRRQTXXXXXXXXXXXXXXXXXXXAVRNAGFLSLPRGFSLAVAGGVEQGPTGETAIVLPAPLYAPSPAAGGCPEGSGEQPFGVESGGGPGTWFVEGQGWGSATGHPLVVESGATRLAGAVNASVSRGGGEDE 1397
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BLAST of mRNA_Ecto-sp13_S_contig18878.5955.1 vs. uniprot
Match: D8LFL7_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL7_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 3.440e-92
Identity = 157/181 (86.74%), Postives = 162/181 (89.50%), Query Frame = 1 
Query:    1 ASPFLFLLDGGTVELVSPVFEAAGQAFVAQVDPPAFPSDKGNEISHLRIVGSGGFQAAGTRPAFTGFHQNDGVNGHRTRTTAPGAKLSVVSVGGRVSLVDTAGNDDRGAGNRDGEGLTKPAAAAAVDTTPFALRDLAMLGAELFLEGGSSGDERQQHRGLAVENSARFRTANVSAVASGAA 543
            ASPFLF+LDGGTVELVSPVFEA GQAFVAQVDPPAFPSD+ +EISHLRIVGSGG QA G  PAFTGFHQNDG NG R RTTA GAKLSVVSVGGRVSLVDT G+DDR AG  DGE LTKPA AA VDTTP ALRDLA+LGAELFLEGGS GDERQQHRGLAVENSARFRTANVSAVASGAA
Sbjct:  163 ASPFLFVLDGGTVELVSPVFEAPGQAFVAQVDPPAFPSDRESEISHLRIVGSGGPQATGAHPAFTGFHQNDGANGRRPRTTASGAKLSVVSVGGRVSLVDTTGDDDRRAGINDGERLTKPAVAA-VDTTPSALRDLALLGAELFLEGGSDGDERQQHRGLAVENSARFRTANVSAVASGAA 342
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18878.5955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K5Q8_9PHAE8.600e-23385.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTH4_ECTSI2.340e-22689.33Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LFL7_ECTSI3.440e-9286.74Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18878contigEcto-sp13_S_contig18878:713..3411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score693.7
Seed ortholog evalue5.6e-197
Seed eggNOG ortholog2880.D7FTH4
Model size1350
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Cds size1350
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462963.9062123-CDS-Ecto-sp13_S_contig18878:712..11531681462963.9062123-CDS-Ecto-sp13_S_contig18878:712..1153Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18878 713..1153 -
1681462963.916379-CDS-Ecto-sp13_S_contig18878:1707..25261681462963.916379-CDS-Ecto-sp13_S_contig18878:1707..2526Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18878 1708..2526 -
1681462963.9251118-CDS-Ecto-sp13_S_contig18878:3321..34111681462963.9251118-CDS-Ecto-sp13_S_contig18878:3321..3411Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18878 3322..3411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18878.5955.1prot_Ecto-sp13_S_contig18878.5955.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18878 713..3411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18878.5955.1

>prot_Ecto-sp13_S_contig18878.5955.1 ID=prot_Ecto-sp13_S_contig18878.5955.1|Name=mRNA_Ecto-sp13_S_contig18878.5955.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=450bp
ASPFLFLLDGGTVELVSPVFEAAGQAFVAQVDPPAFPSDKGNEISHLRIV
GSGGFQAAGTRPAFTGFHQNDGVNGHRTRTTAPGAKLSVVSVGGRVSLVD
TAGNDDRGAGNRDGEGLTKPAAAAAVDTTPFALRDLAMLGAELFLEGGSS
GDERQQHRGLAVENSARFRTANVSAVASGAAAGSGHDEAAADRRRWARGS
PADAAVAGVTLEAQGAAKLGEAWEPKPFFLGTSLSQRFPLPESPKPAGAG
AGAVEGGGRHAARSGGVERDVGDRVSLDGVVVKLAGESEVQGGVFLAGTA
MVQQVAPSGSLTLTGDATIRRQASSSSSSTPPTAAAASPPPAVRNAGVLS
LPRGFSLAVAGGVEQGPTGETAIVLPAPLYAPSPATGGCPEGSGEEPSGV
ESGGGPDTWFVEGQGWGGATGHPLVVESGATRLAGAVNASVSRGGGEDER
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mRNA from alignment at Ecto-sp13_S_contig18878:713..3411-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18878.5955.1 ID=mRNA_Ecto-sp13_S_contig18878.5955.1|Name=mRNA_Ecto-sp13_S_contig18878.5955.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18878:713..3411- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTCGCCGTTCCTGTTTCTGCTGGACGGGGGAACGGTGGAGCTAGTGTC
CCCGGTGTTCGAGGCCGCGGGGCAGGCGTTTGTGGCGCAGGTGCGCGGGT
GCTTTTGCTTCTTCTTTGGATTTCTTGTTTTTTTGGTTTATTCCTTGTTT
GTTTTAGAGACTTCTTTTTCCGTTTTTTTCTCCCATTTTTTGACTCTGTC
GACTGCCCCTCTGGCCCCCATCTTCCACTTCTACTAGCTAGAGGTCCCAA
CCGGGGCCACATAGGAGGGGGGGGCTGGACCCTCTCCTGCGGTTCCTGCC
TGAGATATTTTTATCGCGAGAAGGGTATAACAATCCCTTCCCTCGCGACT
AATGGAATCGATCAAGTTACTAACAGCGAGCTTTGCAGCGCGTCACTTCC
GACGTGAAACAGGATTTATTTAGTGAAGAAAAACTCAATCTACCGGGACT
CGCACCCATGACCTGGGGTTAGCTGGGCTGCAAGGGTACCCACTAGTCCA
GCGGGGCGACCGGAAACTGTGTGGTTTACGTCACCCGTCTTTCGGCCTAT
TATGATGCTAGTCTCGCGGGGTAGCTCGCACGGCGGTGTCGATTAAGGCT
ATATACCCATGGAGTCCTGCATACCCTTGCACACCTATGTCACCCGCTGA
GGAATCCAAGCATTTGTTTTTGCCAAAAGGGAAGTCATCGGGCATTCGTT
TCTTCCTACGAATGAAGTAGTCTAGGCGAGCGTGTCACACCTGGTTTTTT
CGTTCCTGTAGGAAAAAACTCGAGGTCACACAAACCCCCAACAAAACCAC
AACGCCGACCAACGAGCACGCCAAGACACGCAAAGCATGTACCCCCCTAC
CCTACCGAAACAACCCTTCACCTTGCACCACACAGGTTGATCCGCCGGCC
TTTCCCTCCGACAAGGGGAACGAAATCTCACATCTGCGCATCGTGGGCTC
CGGCGGGTTCCAGGCTGCCGGCACGCGCCCCGCCTTCACGGGTTTCCACC
AAAACGACGGCGTCAACGGGCACCGGACCCGAACCACCGCCCCCGGCGCG
AAGCTATCGGTTGTGTCAGTCGGCGGTCGCGTATCGTTGGTAGACACCGC
CGGCAACGACGACCGCGGGGCTGGAAATCGCGACGGGGAAGGTTTAACGA
AGCCGGCGGCGGCGGCGGCGGTAGATACGACACCGTTCGCGCTGCGAGAC
TTAGCCATGCTCGGGGCGGAGCTCTTCCTGGAGGGTGGCAGCAGCGGGGA
TGAGCGGCAACAGCACCGAGGCCTCGCGGTGGAGAATTCGGCCAGGTTCC
GCACGGCCAACGTGTCCGCCGTTGCTTCCGGCGCCGCCGCCGGAAGTGGC
CACGACGAGGCCGCCGCCGATCGGCGGCGATGGGCGCGCGGTTCCCCCGC
AGATGCAGCAGTCGCGGGAGTCACCTTGGAGGCCCAGGGCGCGGCGAAGC
TCGGCGAGGCTTGGGAGCCGAAGCCGTTCTTTCTGGGTACCTCGCTGTCG
CAGCGCTTCCCGTTGCCAGAGTCGCCGAAGCCGGCAGGGGCGGGGGCGGG
AGCCGTCGAAGGCGGCGGTCGGCACGCGGCGCGTAGCGGGGGCGTCGAGC
GCGACGTGGGCGATAGAGTGTCGCTTGACGGAGTTGTAGTGAAGTTGGCG
GGGGAGTCCGAGGTACAAGGAGGCGTTTTCCTGGCCGGGACGGCGATGGT
TCAGGTATGTATCATACGCGCCCGCCGTAGTTTCACAACACATTCCAGAT
ATGATGGCCATTTCAACAAGATACACTGATATTTGTGCGTTTCCTTTGAT
AACTTGGGGGGAGAGGGGGGATGTGTTGCTACTGAAACGCTTTTTTCTCT
CTTTTCTTTGGGTGTACTGAGCCAGCCAGAAAGTTTTTGGGGGTTTGGCG
CCCTCATGTGCTTTGTGCACAAGACCGGAGTTTTGTGCCAAGTATTCGTT
CTGTTGGCCGTGCGTGGCGGCGAACGTCATCTCTACGCAGTATGCGTTCC
GGTACCCCGCAATCTACCGAAGCCCGCCCGCTGAAGAAACTAACCCTACT
TGAAGCAAACGACATCTATCACTCACTTTTTGTACCACTGCTGGTGCTGG
TGCTGGTACTGATGCTGCTGCTTCTGCTCTATCTGCTTCTGGTGCTGCTC
CTTCTGCTGGTGCTGGTGCTACTTCTGCTTGTGCTTCCGGTGCTGCTGCT
TCTGCTTCTGGTGCTGCTACTTCTGCTTCCCCTCAACCATTTTGCCTGGG
TCCGAGAGCAGGTGGCGCCGTCGGGATCGCTCACCCTCACCGGGGACGCC
ACGATTCGCAGACAGGCCTCGTCGTCGTCGTCATCCACCCCCCCTACAGC
GGCGGCCGCGTCGCCCCCGCCCGCGGTGCGGAACGCCGGTGTCCTTTCCC
TCCCTCGCGGGTTTTCCCTCGCCGTCGCAGGCGGTGTGGAGCAGGGTCCC
ACCGGCGAAACCGCCATCGTCCTCCCCGCCCCTCTCTATGCCCCCTCCCC
CGCTACCGGTGGTTGCCCCGAAGGAAGCGGTGAAGAACCTTCCGGGGTGG
AGAGTGGTGGGGGGCCCGATACATGGTTCGTGGAAGGGCAGGGGTGGGGG
GGTGCGACCGGGCACCCGCTGGTGGTAGAGTCGGGGGCGACGAGGCTCGC
CGGCGCGGTGAACGCCTCCGTGTCTCGTGGCGGCGGGGAAGACGAGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18878:713..3411-

>mRNA_Ecto-sp13_S_contig18878.5955.1 ID=mRNA_Ecto-sp13_S_contig18878.5955.1|Name=mRNA_Ecto-sp13_S_contig18878.5955.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1350bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18878:713..3411- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTCGCCGTTCCTGTTTCTGCTGGACGGGGGAACGGTGGAGCTAGTGTC
CCCGGTGTTCGAGGCCGCGGGGCAGGCGTTTGTGGCGCAGGTTGATCCGC
CGGCCTTTCCCTCCGACAAGGGGAACGAAATCTCACATCTGCGCATCGTG
GGCTCCGGCGGGTTCCAGGCTGCCGGCACGCGCCCCGCCTTCACGGGTTT
CCACCAAAACGACGGCGTCAACGGGCACCGGACCCGAACCACCGCCCCCG
GCGCGAAGCTATCGGTTGTGTCAGTCGGCGGTCGCGTATCGTTGGTAGAC
ACCGCCGGCAACGACGACCGCGGGGCTGGAAATCGCGACGGGGAAGGTTT
AACGAAGCCGGCGGCGGCGGCGGCGGTAGATACGACACCGTTCGCGCTGC
GAGACTTAGCCATGCTCGGGGCGGAGCTCTTCCTGGAGGGTGGCAGCAGC
GGGGATGAGCGGCAACAGCACCGAGGCCTCGCGGTGGAGAATTCGGCCAG
GTTCCGCACGGCCAACGTGTCCGCCGTTGCTTCCGGCGCCGCCGCCGGAA
GTGGCCACGACGAGGCCGCCGCCGATCGGCGGCGATGGGCGCGCGGTTCC
CCCGCAGATGCAGCAGTCGCGGGAGTCACCTTGGAGGCCCAGGGCGCGGC
GAAGCTCGGCGAGGCTTGGGAGCCGAAGCCGTTCTTTCTGGGTACCTCGC
TGTCGCAGCGCTTCCCGTTGCCAGAGTCGCCGAAGCCGGCAGGGGCGGGG
GCGGGAGCCGTCGAAGGCGGCGGTCGGCACGCGGCGCGTAGCGGGGGCGT
CGAGCGCGACGTGGGCGATAGAGTGTCGCTTGACGGAGTTGTAGTGAAGT
TGGCGGGGGAGTCCGAGGTACAAGGAGGCGTTTTCCTGGCCGGGACGGCG
ATGGTTCAGCAGGTGGCGCCGTCGGGATCGCTCACCCTCACCGGGGACGC
CACGATTCGCAGACAGGCCTCGTCGTCGTCGTCATCCACCCCCCCTACAG
CGGCGGCCGCGTCGCCCCCGCCCGCGGTGCGGAACGCCGGTGTCCTTTCC
CTCCCTCGCGGGTTTTCCCTCGCCGTCGCAGGCGGTGTGGAGCAGGGTCC
CACCGGCGAAACCGCCATCGTCCTCCCCGCCCCTCTCTATGCCCCCTCCC
CCGCTACCGGTGGTTGCCCCGAAGGAAGCGGTGAAGAACCTTCCGGGGTG
GAGAGTGGTGGGGGGCCCGATACATGGTTCGTGGAAGGGCAGGGGTGGGG
GGGTGCGACCGGGCACCCGCTGGTGGTAGAGTCGGGGGCGACGAGGCTCG
CCGGCGCGGTGAACGCCTCCGTGTCTCGTGGCGGCGGGGAAGACGAGAGG
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