mRNA_Ecto-sp13_S_contig18877.5954.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18877.5954.1
Unique NamemRNA_Ecto-sp13_S_contig18877.5954.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18877.5954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18877contigEcto-sp13_S_contig18877:648..1286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size440
Hectar predicted targeting categoryother localisation
Exons2
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462963.8516736-CDS-Ecto-sp13_S_contig18877:647..6761681462963.8516736-CDS-Ecto-sp13_S_contig18877:647..676Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18877 648..676 -
1681462963.8659258-CDS-Ecto-sp13_S_contig18877:876..11741681462963.8659258-CDS-Ecto-sp13_S_contig18877:876..1174Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18877 877..1174 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462963.8750374-UTR-Ecto-sp13_S_contig18877:1174..12861681462963.8750374-UTR-Ecto-sp13_S_contig18877:1174..1286Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18877 1175..1286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18877.5954.1prot_Ecto-sp13_S_contig18877.5954.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18877 648..1174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18877.5954.1

>prot_Ecto-sp13_S_contig18877.5954.1 ID=prot_Ecto-sp13_S_contig18877.5954.1|Name=mRNA_Ecto-sp13_S_contig18877.5954.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
MFSPSQAGRCVGKCWCLGHFFTPCGQKLRPFSPLMPRDNARAVGEGGQSR
DPLVVTATDRRVNTLRSPYVPTGPVHVRGMCAGHRAFTGLPIVLIVRFQA
ESDVDAPRP
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mRNA from alignment at Ecto-sp13_S_contig18877:648..1286-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18877.5954.1 ID=mRNA_Ecto-sp13_S_contig18877.5954.1|Name=mRNA_Ecto-sp13_S_contig18877.5954.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18877:648..1286- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGTGGTCGTATGTTAGATATGGGGCTTCATGCGGTTTGGTGTCCTCTTG
CAGTGTAGTGTCGGCTGGACGTGGGAAGTGTTCAGGCACTGTTAGTGGGT
TCCATATAGCACATGTTTTCTCCGAGTCAGGCCGGGCGGTGCGTTGGGAA
GTGCTGGTGTCTCGGTCACTTCTTCACTCCGTGCGGGCAGAAACTACGAC
CGTTTTCCCCGCTGATGCCTCGTGATAATGCAAGGGCGGTGGGGGAGGGG
GGACAATCACGAGACCCTTTGGTTGTGACTGCCACCGACCGCCGTGTCAA
CACCTTGCGTAGTCCCTACGTTCCTACTGGGCCCGTCCATGTCCGAGGGA
TGTGCGCCGGGCATCGTGCTTTCACGGGGCTTCCTATTGTGTTGATCGTT
CGCTTCCAGGGCAAGTAATCACGCACCCTTCGACCCTGTGGTTGGATGCA
GTGGAGTATTGGCGGTCCTGTCGGCCTTGTACTCTCGTGTTAGCTTCCCG
TTCCACGCCCTACGTCATGCTGATGCTTTTTGAAGGGCGGTAAGCTCGTG
GCGGAGATACCGCTTGTGGGCACGGCTGACTGATCGTCCTGTCTCCGATT
TCTCACCCAGCTGAGAGCGATGTTGATGCACCACGACCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18877:648..1286-

>mRNA_Ecto-sp13_S_contig18877.5954.1 ID=mRNA_Ecto-sp13_S_contig18877.5954.1|Name=mRNA_Ecto-sp13_S_contig18877.5954.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18877:648..1286- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTCTCCGAGTCAGGCCGGGCGGTGCGTTGGGAAGTGCTGGTGTCT
CGGTCACTTCTTCACTCCGTGCGGGCAGAAACTACGACCGTTTTCCCCGC
TGATGCCTCGTGATAATGCAAGGGCGGTGGGGGAGGGGGGACAATCACGA
GACCCTTTGGTTGTGACTGCCACCGACCGCCGTGTCAACACCTTGCGTAG
TCCCTACGTTCCTACTGGGCCCGTCCATGTCCGAGGGATGTGCGCCGGGC
ATCGTGCTTTCACGGGGCTTCCTATTGTGTTGATCGTTCGCTTCCAGGCT
GAGAGCGATGTTGATGCACCACGACCG
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