mRNA_Ecto-sp13_S_contig18876.5953.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18876.5953.1
Unique NamemRNA_Ecto-sp13_S_contig18876.5953.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18876.5953.1 vs. uniprot
Match: D7G5I3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I3_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.260e-21
Identity = 96/130 (73.85%), Postives = 100/130 (76.92%), Query Frame = 3 
Query:    3 VSNGKTIREICSQLEDLLTAGTATKFCKWLGAYLGELEAKNKNAXXXXXXXXXXXXXXXXXGKKPSKXXXXXXXXXXXXXXGGAGKASVSGDDPKKSDKGVGSKAKGKKEKDEGKTKDHSPSRRRSLSRD 392
            VSNGKTIREICSQLEDLLTAGTAT+FC+WLGA+L ELE KNKNA XXXXXXXXXXXXXXXX      XXXXXXXXXXXXXX         GDD KKSDKG  SKAKGKK+       DHSP RRRS SRD
Sbjct:   77 VSNGKTIREICSQLEDLLTAGTATEFCRWLGAHLRELEGKNKNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDDAKKSDKGASSKAKGKKDXXXXXXXDHSPPRRRSPSRD 206
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BLAST of mRNA_Ecto-sp13_S_contig18876.5953.1 vs. uniprot
Match: A0A6H5L076_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L076_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.460e-21
Identity = 65/106 (61.32%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:   82 ANGWAHTLVSSRRRTRTLPLPHPRLRRLRKERGMGGRSPRSSKLAAVLRRPLPPVAVLARLALAATTQRRVTRVSVRRQRARKKRMRAKPRTTPPPEGGL*VGTPR 399
            + GWAH  VSSR             R+LRKERG GGRSPRSSKLAAV RRPLPP AVLARLA+AATT+RR TRV V              RTTPPPEGGL  GTPR
Sbjct:  149 SGGWAHIFVSSRPXXXXXXXXXXTKRQLRKERGRGGRSPRSSKLAAVARRPLPPAAVLARLAVAATTRRRATRVPVXXXXXXXXXXXXXXRTTPPPEGGLRAGTPR 254
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18876.5953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5I3_ECTSI1.260e-2173.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L076_9PHAE1.460e-2161.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18876contigEcto-sp13_S_contig18876:812..3409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size606
Hectar predicted targeting categoryother localisation
Exons4
Cds size384
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462963.7617908-UTR-Ecto-sp13_S_contig18876:811..10321681462963.7617908-UTR-Ecto-sp13_S_contig18876:811..1032Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18876 812..1032 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462963.7742536-CDS-Ecto-sp13_S_contig18876:1032..11021681462963.7742536-CDS-Ecto-sp13_S_contig18876:1032..1102Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18876 1033..1102 -
1681462963.785038-CDS-Ecto-sp13_S_contig18876:1926..21521681462963.785038-CDS-Ecto-sp13_S_contig18876:1926..2152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18876 1927..2152 -
1681462963.7951-CDS-Ecto-sp13_S_contig18876:2429..24921681462963.7951-CDS-Ecto-sp13_S_contig18876:2429..2492Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18876 2430..2492 -
1681462963.8054192-CDS-Ecto-sp13_S_contig18876:3384..34091681462963.8054192-CDS-Ecto-sp13_S_contig18876:3384..3409Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18876 3385..3409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18876.5953.1prot_Ecto-sp13_S_contig18876.5953.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18876 1033..3409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18876.5953.1

>prot_Ecto-sp13_S_contig18876.5953.1 ID=prot_Ecto-sp13_S_contig18876.5953.1|Name=mRNA_Ecto-sp13_S_contig18876.5953.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
WSATGKPSGRSAPSLKTSSRQAPPPNSANGWAHTLVSSRRRTRTLPLPHP
RLRRLRKERGMGGRSPRSSKLAAVLRRPLPPVAVLARLALAATTQRRVTR
VSVRRQRARKKRMRAKPRTTPPPEGGL*
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mRNA from alignment at Ecto-sp13_S_contig18876:812..3409-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18876.5953.1 ID=mRNA_Ecto-sp13_S_contig18876.5953.1|Name=mRNA_Ecto-sp13_S_contig18876.5953.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2598bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18876:812..3409- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGTCAGCAACGGGAAAACCATCAGGTGCTGTGCTGTGCTGTTCGAGCGG
ACGGACGACTTTATTCTCTTCAAGCCAAAACTTTTTGTCCTTGAACCTCC
GGTCGTAGCACGTTGTACACTACCCTCCCTTTCCGTCAAGAAGGCGGTAA
CTAAACTGGGGCCAAGGAAGTGGGCTGAAACGGCGGGAAATGACAAAGGT
GGGATAGGGAAAGAGCCACCTTTGGCGAAGTAGGCTCCCGAGGCAGTTAT
AAAAAGTGTGCCCGAGGCTAGCCGACCGACACCCACAAACGTTGCGTGGG
ACTCGTGGGTTTCTAATCGGGTGGAGGCGTGCAAGCCGGAGACACCGGCA
CCGACAAAAAGGGCGGCTTCTTCGGAAAAAAAATATAATACAATTGTAGG
CGGCGGATCTTTTGGTGGAGATAAGATGCAGCTCCCATGATTGTGATGGG
GTGTATCTAAAATATTTTGTTGTGGAAAACCAATCATGTGTCATCTCGCA
TGTGCGTGGAACCTCCTCTGTTTCGATTCGCAACAACGTGCGAGCGTATC
TCCTCTGCTGTGCCCTCCACGAGAGAACTCTGGTGTGTACGCCAACTTCA
GAGCAAACGTAGGCTGGGTGGTGTTATGTTGTGAGTACACGACGCCAGGT
TCCGTGTCCTCTGCTGGCTTGTTGTCACCTGACACCATTATTCACTTATT
TAATTACGATACCCTCACTGTTGTATGTTCGTCACTGCCGCTAGGAAGAA
ACCAATATCCTGGTTTCCAGACTTACTGTTGAATATTTCGATGAGGGCAT
TTTTCGCTGGCTCATCTTCGTTGCATCTTTCGTCCTTGAAAGTAGACACG
CGTTTCTCTGACACATACGTATGTCTCCCGCGTTTGTTTTTTCTCTCTCG
CCTACCATTGCCTACAGGGAGATCTGCTCCCAGCTTGAAGACCTCCTCAC
GGCAGGCACCGCCACCAAATTCTGCAAATGGTGAGAGAAACGGAAGGAGG
CGTTTTGTCCTGCCGCAGCTGGTGGGGTGGTCACCGCCAACTGCCCTTGT
ACCTATTTTTGTTGTCATTTTTTGAATGCGTGTGCCGAGTTTGAAACGGT
AACATGTACCCGTGTCCCATACTGTGCCAGATTTGTTTTGGTCATTGCAC
ACCATGATGTACCGCTGTGCGGTATCGCGTTGATGAGCGCAGCGAAATCC
CGCTCTCACAGCCCCCCCCCCTCGCTTGCCGCGGCGCCCCGCAAACGCCG
CCCACAGGCTGGGCGCATACCTTGGTGAGCTCGAGGCGAAGAACAAGAAC
GCTGCCGCTGCCGCACCCAAGACTACGACGACTACGAAAGGAGAGGGGGA
TGGGGGGAAGAAGCCCTCGAAGCAGCAAGCTAGCGGCGGTGTTAAGACGT
CCTCTTCCTCCCGTGGCGGTGCTGGCAAGGCTAGCGTTAGCGGCGACGAC
CCAAAGAAGAGTGACAAGGGTGTCGGTTCGAAGGTGGGACGGCTTTTGGG
GTTTTCAGCATCGTGCTACGTAGGCGTTTTTGGTGAGAGAGTAGGAGGCA
CTGAGGGGAGAGGAACGTTTTAATGTGAAGACAACAGGAGCACAATAGCA
GCAGCGATAACATGAACAGGGAGAGTAGGGGGTCGGGTTTTCCTTCGTCA
GAGACTGCAAGAGGTACTGAGCGGAGACCGGAATGGTTTTTGGTTTGACG
ACAACAACAACAATAATAACAACAACAACAACGGGAGGGTAGGAGGAAGG
GTCAGGGGGGAGGAGGGTGGCCATGGGGAGGCGTGGAGGGGATGCCGTGG
GAGAAGCGGGGGCGTTACAAGCGTCGGTGTGATTGCCACCGCCCGCTTTG
GTGATGGACGGGTTGCTTGCGTGCCGTAGGCAGGGCGGGTGAGCAAGGAG
ATGGCCCTGTCGCCTGTGTCTCGCGTTGCTACATTTCGGAGCGCGCCGGT
GCAAGCCAGCATCGTGTCCGTCGTATTTTCCGTTGGTCCTCGACTTTCAC
ACTGCATAGTGGCTGTTGTGGATAACTTTACAGGCATGTGTTGTATTTGG
ACCACCGGGTGCATTTCATGAAGTGGTTGATCGAGGCGTGGCATGCATGC
ACTCCTTCCCAAAAGAGAGAAATGATGGGAGCGAAATCGGTGCCATGTGA
TGAAGACGGTGTCGTTTGTTTGCCTTGCGAGTGCTACGTCGACACAACAT
TTGAGGAGCGAAACGTCTTTTTTTGCTGTTGTTGTTTTCCACCTTTCGGC
CGCTTGTCGTCATGTGTGGCTGCCTCTCGCCACCGGAAACTACGGCCGCT
GTCGAAGGCAAAGGGCAAGAAAGAAAAGGATGAGGGCAAAACCAAGGACC
ACTCCCCCTCCAGAAGGCGGTCTCTGAGTAGGGACTCCTCGAGGGACGGG
AGCAGGGGGCGAGGTCGCTCCAGCGACCGTTCTAGCGACCGTTCTAGTTA
CCGTTCCAGCGACGTGTCGAGGGATCGATCCAGGGTCCGATCTATGGACC
GATCCAGGGACCGATCCAGGGACCGATCCAGGGATCGCGGCAGGGGATGG
AGCCCGGAAGCGCGGAGTCGGCCTAGAGCGAGAAGCAGAGGCAGTAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18876:812..3409-

>mRNA_Ecto-sp13_S_contig18876.5953.1 ID=mRNA_Ecto-sp13_S_contig18876.5953.1|Name=mRNA_Ecto-sp13_S_contig18876.5953.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18876:812..3409- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGTCAGCAACGGGAAAACCATCAGGGAGATCTGCTCCCAGCTTGAAGAC
CTCCTCACGGCAGGCACCGCCACCAAATTCTGCAAATGGCTGGGCGCATA
CCTTGGTGAGCTCGAGGCGAAGAACAAGAACGCTGCCGCTGCCGCACCCA
AGACTACGACGACTACGAAAGGAGAGGGGGATGGGGGGAAGAAGCCCTCG
AAGCAGCAAGCTAGCGGCGGTGTTAAGACGTCCTCTTCCTCCCGTGGCGG
TGCTGGCAAGGCTAGCGTTAGCGGCGACGACCCAAAGAAGAGTGACAAGG
GTGTCGGTTCGAAGGCAAAGGGCAAGAAAGAAAAGGATGAGGGCAAAACC
AAGGACCACTCCCCCTCCAGAAGGCGGTCTCTGA
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